Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.1e-133 478.0 234 100.0
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 9.4e-130 466.8 234 97.4
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 1.8e-128 462.6 234 97.0
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.0e-128 461.5 234 96.6
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 5.2e-128 461.1 248 92.7
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 3.5e-116 421.8 236 89.4
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 3.5e-116 421.8 236 89.4
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 5.1e-99 364.8 240 78.3
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 2.3e-96 355.9 243 74.9
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 6.9e-88 327.8 230 69.1
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 1.2e-87 327.0 242 67.4
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 5.8e-87 324.7 233 67.8
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 7.6e-87 324.3 232 66.8
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 7.6e-87 324.3 221 69.7
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 1.7e-86 323.2 237 67.9
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 4.2e-85 318.5 246 63.8
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 1.2e-84 317.0 216 71.3
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 1.6e-84 316.6 239 64.9
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 6.0e-84 314.7 223 68.2
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 7.8e-84 314.3 220 69.1
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 7.8e-84 314.3 221 68.8
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 2.3e-83 312.8 242 64.5
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 3.0e-83 312.4 221 67.4
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 5.1e-83 311.6 225 68.0
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 6.6e-83 311.2 242 65.3
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 6.6e-83 311.2 225 68.0
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 6.6e-83 311.2 209 70.3
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 8.7e-83 310.8 216 69.0
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 8.7e-83 310.8 223 67.7
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 1.1e-82 310.5 231 67.1
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 1.1e-82 310.5 244 61.9
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 1.5e-82 310.1 217 67.7
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 1.9e-82 309.7 231 67.1
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 1.9e-82 309.7 214 68.7
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 1.9e-82 309.7 221 67.9
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 2.5e-82 309.3 215 67.0
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 7.3e-82 307.8 230 64.8
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 7.3e-82 307.8 225 67.1
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 2.1e-81 306.2 222 67.6
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 2.8e-81 305.8 221 67.4
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 2.8e-81 305.8 208 70.7
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 3.6e-81 305.4 230 65.7
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 6.2e-81 304.7 223 66.8
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 8.1e-81 304.3 223 66.8
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 1.8e-80 303.1 230 63.5
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 5.3e-80 301.6 235 62.1
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 5.3e-80 301.6 231 61.5
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 6.9e-80 301.2 232 62.1
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 6.9e-80 301.2 228 62.7
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 1.5e-79 300.1 218 65.1
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 2.6e-79 299.3 203 70.9
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 4.5e-79 298.5 230 64.8
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 5.8e-79 298.1 231 60.6
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 1.3e-78 297.0 209 67.5
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 1.3e-78 297.0 212 68.4
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 2.9e-78 295.8 232 61.2
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 3.8e-78 295.4 233 61.4
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 1.4e-77 293.5 239 61.5
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 9.3e-77 290.8 214 64.5
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 2.1e-76 289.7 216 66.2
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 2.1e-76 289.7 229 61.1
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 3.5e-76 288.9 218 64.7
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 6.0e-76 288.1 223 63.2
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 7.9e-76 287.7 233 60.1
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 1.1e-74 283.9 219 62.6
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 3.3e-74 282.3 221 61.5
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 4.3e-74 282.0 222 61.7
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 4.3e-74 282.0 227 60.8
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 7.4e-74 281.2 216 63.0
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 9.6e-74 280.8 227 59.9
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 9.6e-74 280.8 217 62.7
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 2.8e-73 279.3 259 54.8
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 1.1e-72 277.3 243 59.3
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 1.8e-72 276.6 231 58.9
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 2.4e-72 276.2 239 58.2
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 2.4e-72 276.2 235 59.6
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 2.4e-72 276.2 225 62.2
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 4.0e-72 275.4 235 60.0
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 5.3e-72 275.0 223 63.7
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 6.9e-72 274.6 224 59.8
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 1.2e-71 273.9 224 60.3
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 4.5e-71 271.9 212 61.3
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 2.9e-70 269.2 228 58.3
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 3.8e-70 268.9 225 60.9
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 8.4e-70 267.7 214 58.9
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 9.3e-69 264.2 234 58.5
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 1.2e-68 263.8 234 58.5
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 6.0e-68 261.5 238 56.7
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.8e-67 260.0 231 57.1
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 3.9e-67 258.8 230 58.3
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 6.9e-64 248.1 240 55.4
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.9e-62 241.9 223 56.1
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 5.7e-58 228.4 200 61.0
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 7.4e-58 228.0 236 50.8
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 5.3e-56 221.9 222 48.6
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 7.2e-53 211.5 127 76.4
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 3.6e-52 209.1 198 55.6
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 3.0e-51 206.1 128 70.3
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 1.9e-50 203.4 188 55.3
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.8e-49 199.5 123 71.5
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.8e-49 199.5 123 71.5
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 6.9e-48 194.9 150 64.7
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.0e-47 193.4 149 64.4
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 7.7e-47 191.4 201 50.7
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 1.8e-43 180.3 192 51.6
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 8.2e-41 171.4 148 59.5
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 3.1e-40 169.5 104 72.1
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 2.0e-39 166.8 147 58.5
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 3.4e-39 166.0 253 35.2
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 6.5e-38 161.8 130 59.2
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 1.0e-35 154.5 145 52.4
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 6.7e-35 151.8 148 50.7
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 2.6e-34 149.8 109 64.2
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 6.3e-33 145.2 110 62.7
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 1.5e-29 134.0 135 48.9
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.2e-27 125.6 75 73.3
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.5e-26 124.0 129 49.6
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.7e-26 122.1 75 70.7
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.5e-26 121.7 74 73.0
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.7e-25 120.6 75 72.0
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.8e-25 119.8 75 70.7
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.8e-25 119.8 75 70.7
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.8e-25 119.0 74 71.6
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.8e-25 119.0 74 71.6
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 1.9e-21 107.1 130 46.9
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 4.2e-21 105.9 67 67.2
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 7.2e-21 105.1 66 71.2
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 6.8e-19 98.6 111 47.7
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 1.2e-18 97.8 101 52.5
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 1.3e-17 94.4 88 53.4
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 4.1e-16 89.4 58 65.5
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 1.6e-15 87.4 162 35.8
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 1.7e-14 84.0 54 68.5
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 1.7e-14 84.0 79 55.7
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 3.8e-14 82.8 51 68.6
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 6.5e-14 82.0 64 60.9
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 1.1e-13 81.3 69 53.6
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 7.2e-13 78.6 51 66.7
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 9.5e-13 78.2 154 33.1
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 1.2e-12 77.8 45 71.1
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 1.6e-12 77.4 94 42.6
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 3.6e-12 76.3 67 55.2
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 3.6e-12 76.3 158 29.7
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 6.1e-12 75.5 165 28.5
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.3e-11 73.6 164 26.2
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 2.3e-11 73.6 170 27.1
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 3.0e-11 73.2 162 29.6
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 2.0e-10 70.5 174 28.2
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 4.9e-09 65.9 35 80.0
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 6.3e-09 65.5 204 24.5
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 2.4e-08 63.5 34 76.5
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 1.7e-06 57.4 134 27.6


User provided reference genes

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