Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 2.2e-191 672.2 347 100.0
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.6e-181 639.4 347 96.3
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.5e-179 632.9 347 95.1
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 4.3e-179 631.3 347 94.8
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.3e-177 624.4 354 92.9
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.2e-176 623.2 367 90.5
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 3.4e-176 621.7 354 92.7
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 7.1e-174 614.0 345 92.2
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 5.3e-153 544.7 349 81.1
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 4.5e-144 515.0 354 78.2
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 8.2e-138 494.2 344 72.7
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 5.3e-137 491.5 348 73.9
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 6.5e-135 484.6 352 73.3
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 1.9e-134 483.0 352 72.7
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 7.2e-134 481.1 326 75.2
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 6.1e-133 478.0 334 73.1
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 6.1e-133 478.0 334 73.1
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 8.8e-132 474.2 337 72.4
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 9.7e-131 470.7 350 70.6
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 2.2e-130 469.5 344 72.1
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 2.2e-130 469.5 353 70.8
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 2.2e-130 469.5 346 70.8
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 2.8e-130 469.2 350 70.3
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 1.4e-129 466.8 301 77.1
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 4.1e-129 465.3 315 73.7
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 5.3e-129 464.9 354 70.3
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 3.5e-128 462.2 351 71.2
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 1.3e-127 460.3 324 71.3
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 1.3e-127 460.3 350 68.6
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 1.7e-127 459.9 339 70.5
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 3.8e-127 458.8 347 68.3
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 5.0e-127 458.4 347 67.7
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 8.5e-127 457.6 349 69.3
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 1.9e-126 456.4 299 75.6
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 2.5e-126 456.1 314 74.2
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 4.2e-126 455.3 349 69.6
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 5.5e-126 454.9 298 75.2
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 7.2e-126 454.5 349 68.2
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 7.2e-126 454.5 255 84.7
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 2.7e-125 452.6 344 69.5
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.0e-124 450.7 385 63.9
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 1.0e-124 450.7 340 69.4
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 1.8e-124 449.9 340 69.4
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.3e-124 449.5 353 68.3
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 3.0e-124 449.1 350 68.6
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 3.0e-124 449.1 348 67.8
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 5.2e-124 448.4 342 70.2
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 6.7e-124 448.0 328 70.4
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 6.7e-124 448.0 328 70.4
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 6.7e-124 448.0 284 76.8
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 1.1e-123 447.2 338 70.7
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 1.1e-123 447.2 349 69.1
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 1.5e-123 446.8 352 68.2
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 5.7e-123 444.9 331 69.8
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 7.4e-123 444.5 323 70.0
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 9.7e-123 444.1 335 69.3
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 9.7e-123 444.1 335 69.3
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 2.2e-122 443.0 352 70.2
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 1.4e-121 440.3 325 70.2
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 1.8e-121 439.9 352 67.3
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 4.1e-121 438.7 348 69.0
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 4.1e-121 438.7 348 67.2
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 5.3e-121 438.3 293 74.4
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 2.6e-120 436.0 352 67.0
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 2.2e-119 433.0 336 69.6
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 5.0e-119 431.8 338 68.3
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 8.5e-119 431.0 316 70.6
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 1.1e-118 430.6 321 69.2
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 1.9e-118 429.9 340 67.9
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 7.2e-118 427.9 299 71.6
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 9.4e-118 427.6 323 69.0
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 1.6e-117 426.8 295 72.9
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 2.7e-117 426.0 335 67.2
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 3.6e-117 425.6 327 67.9
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 1.4e-116 423.7 327 69.7
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 1.8e-116 423.3 347 64.6
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 2.3e-116 422.9 255 80.8
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 3.0e-116 422.5 310 71.0
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 5.2e-116 421.8 258 79.1
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 8.8e-116 421.0 293 71.7
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 5.7e-115 418.3 326 67.2
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 2.2e-114 416.4 296 71.3
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 2.2e-114 416.4 330 67.9
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 8.3e-114 414.5 310 70.0
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 1.1e-113 414.1 294 70.7
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 1.1e-113 414.1 338 66.6
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 7.2e-110 401.4 314 69.4
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 8.0e-109 397.9 311 66.9
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 5.7e-107 391.7 229 80.8
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 3.1e-105 386.0 349 61.6
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 6.6e-103 378.3 355 60.0
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 1.1e-102 377.5 302 66.9
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 6.8e-92 341.7 348 54.0
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 3.2e-89 332.8 323 58.8
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 2.0e-83 313.5 355 54.1
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 1.3e-82 310.8 255 62.0
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 7.1e-81 305.1 295 52.2
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 7.3e-78 295.0 163 86.5
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 3.6e-77 292.7 363 46.3
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 2.2e-74 283.5 173 75.7
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 3.6e-69 266.2 354 44.9
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 3.1e-68 263.1 187 65.8
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 1.4e-65 254.2 144 80.6
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 1.4e-60 237.7 224 49.6
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 7.9e-56 221.9 132 81.8
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 5.1e-55 219.2 173 67.1
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 8.7e-55 218.4 126 83.3
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 8.7e-55 218.4 126 83.3
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.3e-50 204.5 132 75.0
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 2.1e-40 170.6 370 32.7
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 3.7e-37 159.8 344 34.9
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 7.1e-33 145.6 238 37.4
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 9.3e-33 145.2 154 59.1
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 3.5e-32 143.3 107 69.2
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 2.5e-25 120.6 201 41.3
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 7.9e-24 115.5 83 63.9
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 9.7e-22 108.6 94 59.6
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 8.2e-21 105.5 53 88.7
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 6.1e-16 89.4 65 63.1
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 3.3e-14 83.6 126 41.3
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 6.3e-13 79.3 138 44.2
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 1.1e-12 78.6 126 39.7
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 7.7e-11 72.4 38 84.2
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 3.6e-08 63.5 77 46.8
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 3.6e-08 63.5 77 46.8


User provided reference genes

Program Settings