Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0958 Fragaria x ananassa HOM05D007171 ORTHO05D008946 4.6e-132 474.6 239 100.0
FAN14G2678 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.2e-124 449.9 239 95.8
FvH4_6g14830 Fragaria vesca HOM05D007171 ORTHO05D008946 2.1e-124 449.1 239 95.8
FAN05G0875 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.8e-123 446.0 239 95.8
FAN09G2349 Fragaria x ananassa HOM05D007171 ORTHO05D008946 2.8e-121 438.7 239 93.3
RcHm_v2.0_Chr3g0468061 Rosa chinensis HOM05D007171 ORTHO05D008946 1.8e-88 329.7 243 72.8
MD04G1110400 Malus domestica HOM05D007171 ORTHO05D008946 3.2e-64 249.2 241 53.9
CiPaw.10G139300 Carya illinoinensis HOM05D007171 ORTHO05D008946 1.5e-58 230.3 242 52.5
Eucgr.K03186 Eucalyptus grandis HOM05D007171 ORTHO05D008946 1.4e-56 223.8 240 51.2
QL07p045896 Quercus lobata HOM05D007171 ORTHO05D008946 4.1e-56 222.2 242 48.8
Prupe.6G245500 Prunus persica HOM05D007171 ORTHO05D008946 3.5e-55 219.2 259 47.1
Cfa017468 Carpinus fangiana HOM05D007171 ORTHO05D008946 8.1e-52 208.0 242 46.7
Lalb_Chr21g0317461 Lupinus albus HOM05D007171 ORTHO05D008946 4.0e-51 205.7 206 50.5
Manes.09G071900 Manihot esculenta HOM05D007171 ORTHO05D008946 6.8e-51 204.9 239 46.4
GSVIVG01025575001 Vitis vinifera HOM05D007171 ORTHO05D008946 1.5e-50 203.8 215 50.2
PGR004G1538 Punica granatum HOM05D007171 ORTHO05D008946 7.6e-50 201.4 244 46.7
Actinidia11236 Actinidia chinensis HOM05D007171 ORTHO05D008946 1.3e-49 200.7 215 47.4
TWI74G0166 Tripterygium wilfordii HOM05D007171 ORTHO05D008946 1.3e-49 200.7 238 45.8
Lj2C103T12 Lonicera japonica HOM05D007171 ORTHO05D008946 1.7e-49 200.3 242 44.6
Hma1.2p1_0350F.1_g132480 Hydrangea macrophylla HOM05D007171 ORTHO05D008946 6.4e-49 198.4 239 46.0
Dinv37232 Davidia involucrata HOM05D007171 ORTHO05D008946 1.1e-48 197.6 241 46.9
Nn2g10565 Nelumbo nucifera HOM05D007171 ORTHO05D008946 1.1e-48 197.6 242 44.6
Ciclev10012666m.g Citrus clementina HOM05D007171 ORTHO05D008946 1.9e-48 196.8 239 45.2
CSS0013206 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 9.2e-48 194.5 234 44.9
CSS0034218 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 9.2e-48 194.5 234 44.9
Glyma.05G078000 Glycine max HOM05D007171 ORTHO05D008946 9.2e-48 194.5 241 41.1
MELO3C003081.2 Cucumis melo HOM05D007171 ORTHO05D008946 2.1e-47 193.4 241 44.8
CANSAT80G0026 Cannabis sativa HOM05D007171 ORTHO05D008946 4.6e-47 192.2 241 46.9
Atru.chr8.2508 Acer truncatum HOM05D007171 ORTHO05D008946 1.0e-46 191.0 236 43.6
Ca_04434_v3 Cicer arietinum L. HOM05D007171 ORTHO05D008946 1.0e-46 191.0 207 44.9
Sed0019751 Sechium edule HOM05D007171 ORTHO05D008946 1.3e-46 190.7 241 47.7
Glyma.19G071700 Glycine max HOM05D007171 ORTHO05D008946 1.5e-45 187.2 241 40.7
Medtr6g023885 Medicago truncatula HOM05D007171 ORTHO05D008946 2.5e-45 186.4 234 42.7
Migut.L01644 Erythranthe guttata HOM05D007171 ORTHO05D008946 4.3e-45 185.7 213 44.6
VMungo0464G1509 Vigna mungo HOM05D007171 ORTHO05D008946 9.6e-45 184.5 211 46.0
Phvul.004G054300 Phaseolus vulgaris HOM05D007171 ORTHO05D008946 1.6e-44 183.7 211 46.0
CsaV3_4G024490 Cucumis sativus L. HOM05D007171 ORTHO05D008946 2.1e-44 183.3 241 43.2
Gorai.001G248800 Gossypium raimondii HOM05D007171 ORTHO05D008946 3.6e-44 182.6 239 43.1
Cc06_g03280 Coffea canephora HOM05D007171 ORTHO05D008946 4.7e-44 182.2 239 43.5
Nitab4.5_0002774g0040 Nicotiana tabacum HOM05D007171 ORTHO05D008946 4.7e-44 182.2 243 40.7
Thecc.05G049600 Theobroma cacao HOM05D007171 ORTHO05D008946 6.2e-44 181.8 241 42.7
Gohir.A13G095390 Gossypium hirsutum HOM05D007171 ORTHO05D008946 1.4e-43 180.6 239 41.8
Gohir.D13G097200 Gossypium hirsutum HOM05D007171 ORTHO05D008946 1.8e-43 180.3 239 42.7
EL10Ac7g17274 Beta vulgaris HOM05D007171 ORTHO05D008946 3.1e-43 179.5 226 44.7
Peaxi162Scf00039g00419 Petunia axillaris HOM05D007171 ORTHO05D008946 3.1e-43 179.5 242 39.7
arahy.Tifrunner.gnm1.ann1.56UX32 Arachis hypogaea HOM05D007171 ORTHO05D008946 6.9e-43 178.3 227 44.5
arahy.Tifrunner.gnm1.ann1.J666ZG Arachis hypogaea HOM05D007171 ORTHO05D008946 1.5e-42 177.2 227 44.5
MSTRG.10286 Avicennia marina HOM05D007171 ORTHO05D008946 1.5e-42 177.2 197 45.2
Lj2g0011641 Lotus japonicus HOM05D007171 ORTHO05D008946 2.0e-42 176.8 236 42.4
ATR0594G074 Amborella trichopoda HOM05D007171 ORTHO05D008946 3.4e-42 176.0 242 40.9
Nitab4.5_0000643g0130 Nicotiana tabacum HOM05D007171 ORTHO05D008946 3.4e-42 176.0 244 39.8
HanXRQChr13g0399321 Helianthus annuus HOM05D007171 ORTHO05D008946 4.4e-42 175.6 185 45.9
Haze_20689 Corylus avellana HOM05D007171 ORTHO05D008946 1.7e-41 173.7 198 47.0
BraA10t45334Z Brassica rapa HOM05D007171 ORTHO05D008946 2.9e-41 172.9 242 40.1
BolC9t60129H Brassica oleracea HOM05D007171 ORTHO05D008946 4.9e-41 172.2 242 41.3
A10p32970 Brassica napus HOM05D007171 ORTHO05D008946 8.4e-41 171.4 242 40.1
DCAR_017747 Daucus carota HOM05D007171 ORTHO05D008946 8.4e-41 171.4 242 42.1
SalBow4G3339 Salvia bowleyana HOM05D007171 ORTHO05D008946 1.9e-40 170.2 202 44.1
THA.LOC104826994 Tarenaya hassleriana HOM05D007171 ORTHO05D008946 3.2e-40 169.5 242 40.9
AUR62036841 Chenopodium quinoa HOM05D007171 ORTHO05D008946 7.1e-40 168.3 222 43.2
TPR.G16189 Trifolium pratense HOM05D007171 ORTHO05D008946 3.5e-39 166.0 208 41.3
C09p73940 Brassica napus HOM05D007171 ORTHO05D008946 4.6e-39 165.6 242 39.3
AUR62042289 Chenopodium quinoa HOM05D007171 ORTHO05D008946 4.6e-39 165.6 229 43.2
Thhalv10014568m.g Eutrema salsugineum HOM05D007171 ORTHO05D008946 7.8e-39 164.9 241 38.2
PSO339G0903 Papaver somniferum HOM05D007171 ORTHO05D008946 7.8e-39 164.9 184 43.5
SHI12609 Sapria himalayana HOM05D007171 ORTHO05D008946 1.0e-38 164.5 171 46.2
BcaC06g32009 Brassica carinata HOM05D007171 ORTHO05D008946 1.3e-38 164.1 242 40.1
Solyc09g005930.4 Solanum lycopersicum HOM05D007171 ORTHO05D008946 2.3e-38 163.3 242 36.0
Sopen09g001790 Solanum pennellii HOM05D007171 ORTHO05D008946 2.3e-38 163.3 242 36.4
BcaNung03278 Brassica carinata HOM05D007171 ORTHO05D008946 5.1e-38 162.2 242 39.3
CDE04G2331 Ceratophyllum demersum HOM05D007171 ORTHO05D008946 5.1e-38 162.2 204 38.7
Aa31LG1G22150 Aethionema arabicum HOM05D007171 ORTHO05D008946 1.1e-37 161.0 197 45.2
PSO384G3756 Papaver somniferum HOM05D007171 ORTHO05D008946 1.9e-37 160.2 184 42.4
ECA233G5714 Erigeron canadensis HOM05D007171 ORTHO05D008946 2.5e-37 159.8 170 47.1
PGSC0003DMG400023935 Solanum tuberosum HOM05D007171 ORTHO05D008946 5.6e-37 158.7 242 36.4
Duzib128G0424 Durio zibethinus HOM05D007171 ORTHO05D008946 2.8e-36 156.4 241 40.2
CAN.G350.19 Capsicum annuum HOM05D007171 ORTHO05D008946 8.1e-36 154.8 241 38.2
Carub.0006s0150 Capsella rubella HOM05D007171 ORTHO05D008946 1.4e-35 154.1 241 37.8
Lsat_1_v5_gn_6_33220 Lactuca sativa HOM05D007171 ORTHO05D008946 5.3e-35 152.1 229 39.7
AT5G02740 Arabidopsis thaliana HOM05D007171 ORTHO05D008946 3.4e-34 149.4 242 38.8
SGA_v2.0_scaffold94G28650 Striga asiatica HOM05D007171 ORTHO05D008946 3.4e-34 149.4 237 37.1
AL6G11990 Arabidopsis lyrata HOM05D007171 ORTHO05D008946 1.3e-33 147.5 250 36.8
SEGI_11390 Sequoiadendron giganteum HOM05D007171 ORTHO05D008946 1.4e-32 144.1 179 42.5
MBI14_g46135_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 2.7e-31 139.8 302 30.8
Sc07g0006190 Simmondsia chinensis HOM05D007171 ORTHO05D008946 3.0e-30 136.3 180 41.1
unitig_0.g696 Utricularia gibba HOM05D007171 ORTHO05D008946 3.0e-30 136.3 170 41.2
Potri.006G215800 Populus trichocarpa HOM05D007171 ORTHO05D008946 7.4e-29 131.7 262 32.8
Zm00001eb397290 Zea mays HOM05D007171 ORTHO05D008946 3.7e-28 129.4 161 39.8
Os03g0282900 Oryza sativa ssp. japonica HOM05D007171 ORTHO05D008946 4.8e-28 129.0 244 34.4
Sabra06G0166400 Salix brachista HOM05D007171 ORTHO05D008946 1.1e-27 127.9 241 34.0
Psat1g085840 Pisum sativum HOM05D007171 ORTHO05D008946 6.0e-23 112.1 128 43.0
Aqoxy2G01927 Aquilegia oxysepala HOM05D007171 ORTHO05D008946 5.1e-22 109.0 140 42.9
vmacro20092 Vaccinium macrocarpon HOM05D007171 ORTHO05D008946 1.1e-21 107.8 165 38.8
COL.COLO4_10310 Corchorus olitorius HOM05D007171 ORTHO05D008946 1.3e-20 104.4 235 33.2
CARHR210640 Cardamine hirsuta HOM05D007171 ORTHO05D008946 1.7e-17 94.0 165 35.8
Oeu035685.1 Olea europaea HOM05D007171 ORTHO05D008946 5.5e-16 89.0 85 45.9
HPP92_001690 Vanilla planifolia HOM05D007171 ORTHO05D008946 4.6e-15 85.9 124 34.7
Ah.08g212060 Amaranthus hybridus HOM05D007171 ORTHO05D008946 6.7e-14 82.0 93 40.9
ClCG04G008670 Citrullus lanatus HOM05D007171 ORTHO05D008946 1.5e-13 80.9 74 48.6
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 2.5e-13 80.1 80 45.0
Ah.08g212070 Amaranthus hybridus HOM05D007171 ORTHO05D008946 3.1e-11 73.2 78 46.2
MBI14_g16337_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 5.9e-10 68.9 68 51.5
Mapoly0061s0086 Marchantia polymorpha HOM05D007171 ORTHO05D008946 3.2e-08 63.2 166 30.7
CBR_g5643 Chara braunii HOM05D062952 ORTHO05D008946 2.1e-07 60.5 268 22.4
HanXRQChr13g0399281 Helianthus annuus HOM05D007171 ORTHO05D008946 7.9e-07 58.5 72 41.7


User provided reference genes

Program Settings