Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.4e-172 608.2 307 100.0
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 5.9e-140 501.1 274 93.8
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.8e-139 498.4 274 93.1
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.6e-137 493.0 275 92.7
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 1.4e-136 490.0 275 92.4
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 3.6e-129 465.3 278 87.8
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 4.5e-95 352.1 287 67.9
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 7.6e-95 351.3 294 67.7
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 2.2e-94 349.7 285 68.8
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 5.1e-91 338.6 285 66.3
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 1.9e-90 336.7 274 66.8
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 2.5e-90 336.3 268 67.9
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 5.6e-90 335.1 275 66.2
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 2.4e-88 329.7 271 66.8
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 3.1e-88 329.3 321 58.6
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 9.9e-87 324.3 266 68.4
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 1.7e-86 323.6 278 64.4
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.7e-86 323.6 280 65.4
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 2.2e-86 323.2 280 64.6
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 3.8e-86 322.4 217 77.4
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 4.9e-86 322.0 215 77.7
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 6.4e-86 321.6 275 64.0
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 1.1e-85 320.9 248 69.8
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 1.1e-85 320.9 267 66.3
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 1.9e-85 320.1 276 65.2
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 1.9e-85 320.1 262 67.6
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 5.5e-85 318.5 277 65.0
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 9.3e-85 317.8 235 72.8
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 9.3e-85 317.8 293 64.2
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 9.3e-85 317.8 266 67.3
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 1.2e-84 317.4 208 77.9
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 1.6e-84 317.0 252 68.3
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 2.1e-84 316.6 252 67.9
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 2.7e-84 316.2 208 78.4
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 2.7e-84 316.2 270 65.6
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 3.5e-84 315.8 210 76.7
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 4.6e-84 315.5 296 60.5
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 6.0e-84 315.1 216 75.0
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 6.0e-84 315.1 213 77.9
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 7.9e-84 314.7 261 67.8
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 1.3e-83 313.9 213 75.6
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 1.8e-83 313.5 216 75.9
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 3.0e-83 312.8 213 75.6
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 3.0e-83 312.8 211 74.9
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 3.9e-83 312.4 224 71.9
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 5.1e-83 312.0 221 73.3
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 5.1e-83 312.0 214 75.7
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 5.1e-83 312.0 213 75.6
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 6.7e-83 311.6 277 63.9
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.1e-82 310.8 208 77.4
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 1.5e-82 310.5 283 60.1
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 1.5e-82 310.5 281 61.2
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.5e-82 309.7 208 77.4
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 3.3e-82 309.3 211 75.8
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 3.3e-82 309.3 208 76.9
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 5.6e-82 308.5 283 62.2
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 5.6e-82 308.5 211 74.4
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 7.4e-82 308.1 218 72.9
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 1.6e-81 307.0 207 75.4
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 1.6e-81 307.0 243 67.5
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 1.6e-81 307.0 276 59.8
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 3.7e-81 305.8 212 72.6
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 4.8e-81 305.4 211 75.4
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 4.8e-81 305.4 211 75.4
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 1.1e-80 304.3 211 76.3
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 1.1e-80 304.3 212 74.5
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 1.1e-80 304.3 212 74.5
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 1.4e-80 303.9 214 72.9
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 1.4e-80 303.9 277 61.0
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 1.8e-80 303.5 262 65.6
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 1.8e-80 303.5 216 74.5
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 2.4e-80 303.1 239 67.4
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 2.4e-80 303.1 275 62.5
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 2.4e-80 303.1 275 62.5
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 3.1e-80 302.8 198 77.8
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 4.0e-80 302.4 250 66.0
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 5.3e-80 302.0 223 68.6
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 6.9e-80 301.6 210 72.9
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 1.2e-79 300.8 250 66.8
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 1.3e-78 297.4 200 75.0
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 5.5e-77 292.0 183 77.6
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 1.2e-76 290.8 183 77.0
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 1.3e-75 287.3 235 67.7
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 4.3e-74 282.3 199 72.4
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 4.3e-74 282.3 300 58.0
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 1.6e-73 280.4 199 71.4
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 3.1e-72 276.2 173 80.3
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 1.5e-71 273.9 211 70.1
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 2.0e-71 273.5 246 65.0
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 4.5e-71 272.3 199 72.4
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 7.6e-71 271.6 203 68.5
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 5.0e-70 268.9 349 49.9
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 6.5e-70 268.5 223 65.5
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 1.1e-69 267.7 214 64.5
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 5.5e-69 265.4 214 67.8
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 1.2e-68 264.2 191 69.6
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 2.7e-68 263.1 198 68.7
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 1.8e-67 260.4 188 69.7
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 1.1e-66 257.7 251 61.0
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 1.9e-66 256.9 284 54.6
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 9.7e-66 254.6 194 70.1
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 6.9e-64 248.4 212 59.0
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.5e-63 247.3 151 82.8
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 3.0e-59 233.0 198 63.6
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 3.1e-48 196.4 110 85.5
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 1.3e-46 191.0 268 47.4
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 1.9e-45 187.2 204 54.4
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 1.2e-44 184.5 258 46.1
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 1.0e-43 181.4 121 75.2
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 1.0e-43 181.4 209 46.4
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 1.7e-41 174.1 219 42.9
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 1.6e-39 167.5 179 58.7
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 1.7e-38 164.1 97 81.4
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 2.2e-38 163.7 209 45.9
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 1.1e-37 161.4 97 80.4
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 6.8e-35 152.1 170 52.9
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.2e-34 151.4 117 69.2
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 8.3e-33 145.2 258 40.3
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 1.0e-30 138.3 80 81.2
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 2.2e-30 137.1 76 85.5
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 6.5e-30 135.6 173 48.0
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 5.2e-27 125.9 77 80.5
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 2.3e-19 100.5 78 70.5
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 9.8e-18 95.1 61 77.0
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 4.1e-16 89.7 133 49.6
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 4.6e-15 86.3 50 80.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 5.9e-15 85.9 51 78.4
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 3.9e-14 83.2 52 75.0
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.6e-12 77.8 55 69.1
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 8.9e-11 72.0 54 68.5
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.2e-10 71.6 47 70.2
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 1.6e-07 61.2 47 63.8


User provided reference genes

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