Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 4.5e-86 321.2 163 100.0
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.5e-86 321.2 163 100.0
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.5e-86 321.2 163 100.0
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.5e-86 321.2 163 100.0
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.5e-86 321.2 163 100.0
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 4.5e-86 321.2 163 100.0
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 4.6e-83 311.2 163 95.1
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 3.1e-79 298.5 163 90.2
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 1.2e-78 296.6 163 88.3
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 1.5e-78 296.2 163 88.3
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 3.2e-76 288.5 160 88.8
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 7.1e-76 287.3 160 88.8
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 1.2e-75 286.6 158 87.3
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 3.5e-75 285.0 157 86.6
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 6.1e-75 284.3 158 86.1
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 3.0e-74 282.0 158 86.7
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 6.7e-74 280.8 160 85.6
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 8.7e-74 280.4 160 85.0
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 8.7e-74 280.4 160 85.0
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 3.3e-73 278.5 157 84.7
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 5.7e-73 277.7 160 84.4
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.8e-72 275.4 157 84.1
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 4.8e-72 274.6 160 83.1
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 1.1e-71 273.5 160 81.9
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 1.1e-71 273.5 160 81.9
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 1.4e-71 273.1 160 83.1
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 1.4e-71 273.1 160 83.1
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 2.4e-71 272.3 160 81.9
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 3.1e-71 271.9 155 83.2
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 5.3e-71 271.2 158 81.6
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 5.3e-71 271.2 160 83.8
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 5.3e-71 271.2 160 82.5
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 9.0e-71 270.4 157 82.8
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 1.5e-70 269.6 158 81.0
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 1.5e-70 269.6 155 83.2
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 2.6e-70 268.9 158 81.0
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.6e-70 268.9 160 80.6
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 2.6e-70 268.9 160 81.2
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 3.4e-70 268.5 160 84.4
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.5e-70 268.1 155 83.9
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 7.7e-70 267.3 155 83.9
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 7.7e-70 267.3 155 83.9
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.0e-69 266.9 157 83.4
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.7e-69 266.2 157 84.1
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.7e-69 266.2 160 79.4
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 2.2e-69 265.8 154 81.8
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 3.8e-69 265.0 155 81.9
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 6.5e-69 264.2 156 82.7
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 8.5e-69 263.8 160 83.1
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 1.9e-68 262.7 160 78.8
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 2.5e-68 262.3 160 81.2
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 2.5e-68 262.3 154 83.8
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 4.2e-68 261.5 158 79.1
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 4.2e-68 261.5 160 81.9
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 9.4e-68 260.4 155 80.0
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 9.4e-68 260.4 158 79.7
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 1.2e-67 260.0 160 77.5
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.6e-67 259.6 160 80.6
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.1e-67 259.2 160 77.5
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.1e-67 259.2 160 77.5
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 2.7e-67 258.8 160 76.9
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 2.7e-67 258.8 160 77.5
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.7e-67 258.8 160 76.2
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 6.1e-67 257.7 162 74.7
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 1.0e-66 256.9 160 76.9
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 2.3e-66 255.8 158 79.1
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 2.3e-66 255.8 154 79.9
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 2.3e-66 255.8 154 79.9
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 3.0e-66 255.4 157 79.6
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 5.1e-66 254.6 157 79.0
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 1.1e-65 253.4 161 75.8
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.1e-65 253.4 161 75.8
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 1.1e-65 253.4 161 75.8
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 1.1e-65 253.4 161 75.8
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.1e-65 253.4 161 75.8
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 1.5e-65 253.1 158 77.2
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 1.5e-65 253.1 158 77.2
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.5e-65 253.1 157 78.3
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 1.5e-65 253.1 157 77.1
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.5e-65 253.1 157 77.1
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 2.5e-65 252.3 160 75.0
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 3.3e-65 251.9 163 74.2
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 4.3e-65 251.5 157 75.8
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 4.3e-65 251.5 154 79.9
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 4.3e-65 251.5 157 77.1
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 7.4e-65 250.8 160 75.0
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 9.7e-65 250.4 155 77.4
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 9.7e-65 250.4 160 77.5
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 1.3e-64 250.0 160 77.5
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 1.7e-64 249.6 158 75.9
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 2.2e-64 249.2 161 74.5
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 2.2e-64 249.2 161 74.5
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 2.2e-64 249.2 161 74.5
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.2e-64 249.2 141 85.8
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 2.2e-64 249.2 158 76.6
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 2.8e-64 248.8 160 77.5
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 3.7e-64 248.4 158 75.3
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 4.8e-64 248.1 155 74.8
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 4.8e-64 248.1 160 78.1
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 6.3e-64 247.7 153 76.5
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 1.1e-63 246.9 155 74.2
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 2.4e-63 245.7 161 72.7
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 3.1e-63 245.4 159 77.4
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 3.1e-63 245.4 159 77.4
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 1.2e-62 243.4 158 74.1
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 1.2e-62 243.4 160 75.6
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 1.2e-62 243.4 209 61.7
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 5.9e-62 241.1 154 77.3
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 1.3e-61 240.0 136 86.0
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 2.2e-61 239.2 157 72.0
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 2.7e-59 232.3 245 53.1
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 6.1e-59 231.1 143 76.9
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 1.1e-57 226.9 144 79.2
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 1.3e-56 223.4 154 69.5
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.7e-56 223.0 146 71.2
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 4.1e-55 218.4 125 83.2
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 7.0e-55 217.6 161 67.7
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 9.1e-55 217.2 144 71.5
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.5e-54 216.5 123 85.4
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 5.9e-54 214.5 162 65.4
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 1.0e-53 213.8 144 69.4
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 1.7e-48 196.4 112 83.0
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 4.8e-48 194.9 199 51.8
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 8.2e-48 194.1 301 41.2
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 1.4e-47 193.4 113 82.3
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 1.2e-46 190.3 158 58.2
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 4.2e-44 181.8 187 51.9
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 1.4e-42 176.8 144 66.0
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 5.9e-38 161.4 98 81.6
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 1.7e-37 159.8 113 72.6
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 2.9e-37 159.1 101 76.2
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 2.3e-34 149.4 154 48.7
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 1.2e-33 147.1 133 55.6
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.4e-31 140.2 149 47.7
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.8e-31 139.8 149 47.7
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 5.0e-29 131.7 146 54.8
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.5e-28 129.4 147 49.7
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 4.2e-28 128.6 146 43.8
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 3.6e-27 125.6 145 45.5
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 8.0e-27 124.4 77 74.0
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 8.9e-26 120.9 132 45.5
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 2.0e-22 109.8 76 69.7
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.9e-22 108.2 96 61.5
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.9e-22 108.2 96 61.5
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 1.0e-21 107.5 65 78.5
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.3e-21 107.1 65 78.5
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 2.9e-21 105.9 101 59.4
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 1.9e-20 103.2 64 78.1
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 1.6e-19 100.1 133 38.3
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 2.1e-19 99.8 78 66.7
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.8e-19 99.4 64 75.0
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 2.7e-14 82.8 147 41.5
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 7.5e-09 64.7 69 53.6
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 2.2e-08 63.2 69 52.2
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 1.4e-07 60.5 49 65.3


User provided reference genes

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