Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 8.4e-62 240.4 137 100.0
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 7.1e-61 237.3 137 94.2
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 3.5e-60 235.0 137 92.7
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 2.3e-59 232.3 137 96.4
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 5.6e-58 227.6 137 89.8
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 5.1e-35 151.4 145 64.1
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 9.7e-34 147.1 125 68.8
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 1.8e-32 142.9 137 62.8
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 1.2e-23 113.6 121 55.4
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 5.9e-23 111.3 121 57.0
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 1.7e-22 109.8 129 49.6
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 3.2e-21 105.5 134 50.0
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 1.2e-20 103.6 135 48.9
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 2.7e-20 102.4 133 48.1
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 1.4e-19 100.1 112 55.4
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 1.8e-19 99.8 99 56.6
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 5.2e-19 98.2 134 47.8
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 6.8e-19 97.8 117 50.4
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 2.6e-18 95.9 134 47.0
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 1.7e-17 93.2 108 50.9
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 1.7e-17 93.2 115 50.4
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 2.8e-17 92.4 105 53.3
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 5.3e-16 88.2 105 47.6
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 1.2e-15 87.0 103 50.5
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 1.6e-15 86.7 103 51.5
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 1.6e-15 86.7 137 45.3
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 1.6e-15 86.7 108 51.9
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 2.0e-15 86.3 115 46.1
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 3.5e-15 85.5 107 46.7
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 7.7e-15 84.3 92 56.5
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 1.7e-14 83.2 131 42.0
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 2.2e-14 82.8 91 51.6
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 2.9e-14 82.4 135 44.4
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 3.8e-14 82.0 107 49.5
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 6.5e-14 81.3 140 43.6
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 8.5e-14 80.9 94 48.9
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 8.5e-14 80.9 103 47.6
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 1.1e-13 80.5 61 62.3
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 1.1e-13 80.5 113 45.1
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 1.1e-13 80.5 103 46.6
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 1.1e-13 80.5 102 46.1
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 1.1e-13 80.5 94 50.0
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 2.5e-13 79.3 105 46.7
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 3.2e-13 79.0 100 49.0
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 3.2e-13 79.0 100 49.0
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 3.2e-13 79.0 134 39.6
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 3.2e-13 79.0 111 43.2
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 4.2e-13 78.6 89 51.7
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 7.2e-13 77.8 110 43.6
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 1.2e-12 77.0 92 52.2
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 1.6e-12 76.6 94 44.7
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 1.6e-12 76.6 93 48.4
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 1.6e-12 76.6 88 50.0
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 2.1e-12 76.3 92 47.8
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 2.1e-12 76.3 59 61.0
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 3.6e-12 75.5 111 45.9
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 3.6e-12 75.5 61 60.7
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 4.7e-12 75.1 93 49.5
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 4.7e-12 75.1 66 59.1
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 4.7e-12 75.1 86 52.3
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 6.1e-12 74.7 91 51.6
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 8.0e-12 74.3 79 55.7
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 8.0e-12 74.3 84 48.8
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 1.0e-11 73.9 78 53.8
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 1.0e-11 73.9 90 50.0
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 1.4e-11 73.6 89 48.3
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 1.8e-11 73.2 59 61.0
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 3.0e-11 72.4 86 45.3
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 3.0e-11 72.4 86 45.3
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 3.0e-11 72.4 91 49.5
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 4.0e-11 72.0 69 56.5
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 5.2e-11 71.6 93 40.9
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 6.8e-11 71.2 58 65.5
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 1.2e-10 70.5 75 52.0
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 1.2e-10 70.5 85 48.2
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 1.2e-10 70.5 62 56.5
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 1.5e-10 70.1 99 42.4
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 2.0e-10 69.7 86 44.2
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 2.0e-10 69.7 86 44.2
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 2.0e-10 69.7 86 44.2
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 4.4e-10 68.6 61 59.0
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 4.4e-10 68.6 62 54.8
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 5.7e-10 68.2 71 50.7
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 9.8e-10 67.4 65 53.8
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 9.8e-10 67.4 90 43.3
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 9.8e-10 67.4 62 54.8
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 3.7e-09 65.5 69 49.3
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 3.7e-09 65.5 86 46.5
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 6.3e-09 64.7 86 41.9
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 1.8e-08 63.2 88 44.3
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 3.1e-08 62.4 88 40.9
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 7.0e-08 61.2 72 50.0
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.0e-07 59.7 45 64.4
Pp3c10_2350 Physcomitrium patens HOM05D007527 ORTHO05D009523 1.0e-06 57.4 75 42.7
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.0e-06 57.4 51 54.9
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 1.7e-06 56.6 80 43.8
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 3.8e-06 55.5 45 55.6
Mapoly0006s0085 Marchantia polymorpha HOM05D007527 ORTHO05D009523 6.6e-06 54.7 52 51.9


User provided reference genes

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