Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0922 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.0e-144 516.2 351 100.0
FvH4_6g21620 Fragaria vesca HOM05D007176 ORTHO05D009050 4.2e-142 508.4 351 99.1
FAN14G2546 Fragaria x ananassa HOM05D007176 ORTHO05D009050 4.7e-141 505.0 351 98.6
FAN09G2372 Fragaria x ananassa HOM05D007176 ORTHO05D009050 1.5e-139 500.0 351 97.4
FAN05G5781 Fragaria x ananassa HOM05D007176 ORTHO05D009050 2.4e-137 492.7 357 96.1
RcHm_v2.0_Chr3g0478871 Rosa chinensis HOM05D007176 ORTHO05D009050 5.9e-136 488.0 351 87.5
Prupe.7G084400 Prunus persica HOM05D007176 ORTHO05D009050 1.9e-113 413.3 350 84.3
Manes.09G039600 Manihot esculenta HOM05D007176 ORTHO05D009050 4.1e-113 412.1 345 83.2
Dinv16365 Davidia involucrata HOM05D007176 ORTHO05D009050 2.1e-112 409.8 350 72.6
QL07p025011 Quercus lobata HOM05D007176 ORTHO05D009050 6.6e-111 404.8 347 82.1
Cfa020128 Carpinus fangiana HOM05D007176 ORTHO05D009050 3.3e-110 402.5 348 61.8
Thecc.05G178200 Theobroma cacao HOM05D007176 ORTHO05D009050 9.6e-110 401.0 341 71.0
Gohir.A04G053500 Gossypium hirsutum HOM05D007176 ORTHO05D009050 3.6e-109 399.1 352 73.6
Duzib106G0399 Durio zibethinus HOM05D007176 ORTHO05D009050 1.4e-108 397.1 341 72.7
Nn2g15783 Nelumbo nucifera HOM05D007176 ORTHO05D009050 1.4e-108 397.1 351 77.2
TAR633G1141 Trochodendron aralioides HOM05D007176 ORTHO05D009050 4.9e-106 388.7 350 79.4
CiPaw.09G027300 Carya illinoinensis HOM05D007176 ORTHO05D009050 4.2e-105 385.6 344 80.8
TAR633G0683 Trochodendron aralioides HOM05D007176 ORTHO05D009050 5.4e-105 385.2 350 78.9
Migut.K00028 Erythranthe guttata HOM05D007176 ORTHO05D009050 1.7e-103 380.2 351 78.6
Lju124C23T17 Lonicera japonica HOM05D007176 ORTHO05D009050 2.3e-103 379.8 332 81.9
Eucgr.K01865 Eucalyptus grandis HOM05D007176 ORTHO05D009050 2.5e-102 376.3 350 76.6
Hma1.2p1_0645F.1_g194890 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 7.3e-102 374.8 348 78.4
BcaC07g40246 Brassica carinata HOM05D007176 ORTHO05D009050 6.2e-101 371.7 345 71.3
MD12G1053200 Malus domestica HOM05D007176 ORTHO05D009050 8.1e-101 371.3 345 78.0
MD14G1051600 Malus domestica HOM05D007176 ORTHO05D009050 8.1e-101 371.3 351 68.9
Aa31LG10G13110 Aethionema arabicum HOM05D007176 ORTHO05D009050 1.4e-100 370.5 345 71.3
GSVIVG01033441001 Vitis vinifera HOM05D007176 ORTHO05D009050 3.4e-99 365.9 328 75.3
arahy.Tifrunner.gnm1.ann1.5B5G66 Arachis hypogaea HOM05D007176 ORTHO05D009050 4.4e-99 365.5 357 76.2
EL10Ac3g06857 Beta vulgaris HOM05D007176 ORTHO05D009050 9.9e-99 364.4 341 76.8
Potri.006G195800 Populus trichocarpa HOM05D007176 ORTHO05D009050 2.2e-98 363.2 342 78.7
A09p51090 Brassica napus HOM05D007176 ORTHO05D009050 1.9e-97 360.1 369 66.1
Cpa.g.sc85.35 Carica papaya HOM05D007176 ORTHO05D009050 1.9e-97 360.1 349 76.8
ECA247G1245 Erigeron canadensis HOM05D007176 ORTHO05D009050 5.4e-97 358.6 345 77.4
Lj5g0009846 Lotus japonicus HOM05D007176 ORTHO05D009050 1.2e-96 357.5 346 76.9
THA.LOC104802720 Tarenaya hassleriana HOM05D007176 ORTHO05D009050 3.5e-96 355.9 340 67.4
arahy.Tifrunner.gnm1.ann1.I5CDLA Arachis hypogaea HOM05D007176 ORTHO05D009050 1.7e-95 353.6 370 73.0
Sabra06G0150500 Salix brachista HOM05D007176 ORTHO05D009050 5.1e-95 352.1 342 77.2
CANSAT64G0938 Cannabis sativa HOM05D007176 ORTHO05D009050 7.3e-94 348.2 352 73.9
HanXRQChr10g0300591 Helianthus annuus HOM05D007176 ORTHO05D009050 7.3e-94 348.2 350 75.1
Rhsim04G0094400 Rhododendron simsii HOM05D007176 ORTHO05D009050 1.3e-93 347.4 345 76.8
C08p33910 Brassica napus HOM05D007176 ORTHO05D009050 4.8e-93 345.5 345 68.1
CSS0044198 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 5.4e-89 332.0 345 74.2
SalBow1G6257 Salvia bowleyana HOM05D007176 ORTHO05D009050 5.4e-89 332.0 360 72.2
Sc13g0002490 Simmondsia chinensis HOM05D007176 ORTHO05D009050 7.1e-89 331.6 344 65.1
PGR142G3952 Punica granatum HOM05D007176 ORTHO05D009050 1.0e-87 327.8 350 71.1
TPR.G19346 Trifolium pratense HOM05D007176 ORTHO05D009050 1.0e-87 327.8 376 69.9
MBI01_g44281_MAGBIO Magnolia biondii HOM05D007176 ORTHO05D009050 3.0e-87 326.2 331 55.3
Haze_20048 Corylus avellana HOM05D007176 ORTHO05D009050 8.7e-87 324.7 380 51.3
Haze_20055 Corylus avellana HOM05D007176 ORTHO05D009050 8.7e-87 324.7 380 51.3
Thhalv10006065m.g Eutrema salsugineum HOM05D007176 ORTHO05D009050 2.5e-86 323.2 350 71.7
AL5G40300 Arabidopsis lyrata HOM05D007176 ORTHO05D009050 7.4e-86 321.6 350 71.1
CDE04G3485 Ceratophyllum demersum HOM05D007176 ORTHO05D009050 7.4e-86 321.6 350 71.4
CARHR168930 Cardamine hirsuta HOM05D007176 ORTHO05D009050 3.7e-85 319.3 345 63.8
Carub.0005s2528 Capsella rubella HOM05D007176 ORTHO05D009050 4.5e-83 312.4 350 70.0
vmacro22113 Vaccinium macrocarpon HOM05D007176 ORTHO05D009050 4.5e-83 312.4 376 49.7
Actinidia17284 Actinidia chinensis HOM05D007176 ORTHO05D009050 5.8e-83 312.0 345 66.4
AT3G58530 Arabidopsis thaliana HOM05D007176 ORTHO05D009050 6.5e-82 308.5 350 69.1
Os02g0281150 Oryza sativa ssp. japonica HOM05D007176 ORTHO05D009050 1.4e-81 307.4 346 66.2
Sopen06g001340 Solanum pennellii HOM05D007176 ORTHO05D009050 5.5e-81 305.4 347 63.7
Sp5g04340 Schrenkiella parvula HOM05D007176 ORTHO05D009050 1.6e-80 303.9 350 60.0
Medtr1g054625 Medicago truncatula HOM05D007176 ORTHO05D009050 6.0e-80 302.0 350 70.6
PGSC0003DMG400029168 Solanum tuberosum HOM05D007176 ORTHO05D009050 1.3e-79 300.8 347 70.3
CAN.G111.5 Capsicum annuum HOM05D007176 ORTHO05D009050 3.9e-79 299.3 351 69.5
Peaxi162Scf00258g00925 Petunia axillaris HOM05D007176 ORTHO05D009050 6.7e-79 298.5 346 68.8
Solyc06g005380.3 Solanum lycopersicum HOM05D007176 ORTHO05D009050 6.7e-79 298.5 347 70.0
Cc06_g15630 Coffea canephora HOM05D007176 ORTHO05D009050 1.5e-78 297.4 352 69.9
Gohir.D04G094700 Gossypium hirsutum HOM05D007176 ORTHO05D009050 2.5e-78 296.6 276 72.8
AUR62032747 Chenopodium quinoa HOM05D007176 ORTHO05D009050 7.4e-78 295.0 319 72.4
CSS0035640 Camellia sinensis var. sinensis HOM05D007176 ORTHO05D009050 9.6e-78 294.7 345 70.4
Gorai.009G392400 Gossypium raimondii HOM05D007176 ORTHO05D009050 8.2e-77 291.6 324 67.6
COL.COLO4_29390 Corchorus olitorius HOM05D007176 ORTHO05D009050 1.4e-76 290.8 319 63.9
Ca_03573_v3 Cicer arietinum L. HOM05D007176 ORTHO05D009050 6.9e-76 288.5 351 68.7
Glyma.09G105500 Glycine max HOM05D007176 ORTHO05D009050 7.6e-75 285.0 355 69.0
BolC8t50987H Brassica oleracea HOM05D000032 ORTHO05D001620 2.9e-74 283.1 276 72.5
Atru.BG.213.p Acer truncatum HOM05D007176 ORTHO05D009050 6.5e-74 282.0 342 70.5
Lalb_Chr02g0153821 Lupinus albus HOM05D007176 ORTHO05D009050 2.5e-73 280.0 348 67.8
Ah.13g075580 Amaranthus hybridus HOM05D007176 ORTHO05D009050 3.2e-73 279.6 288 77.4
Hma1.2p1_0645F.1_g194900 Hydrangea macrophylla HOM05D007176 ORTHO05D009050 1.6e-72 277.3 290 77.6
Aqoxy279s002 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 1.8e-71 273.9 347 67.7
Aqoxy2G00051 Aquilegia oxysepala HOM05D007176 ORTHO05D009050 1.8e-71 273.9 347 67.7
DCAR_019856 Daucus carota HOM05D007176 ORTHO05D009050 9.7e-70 268.1 328 47.0
Nitab4.5_0008255g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 1.3e-69 267.7 347 45.2
Lsat_1_v5_gn_9_26900 Lactuca sativa HOM05D007176 ORTHO05D009050 4.1e-68 262.7 352 52.0
PSO541G4948 Papaver somniferum HOM05D007176 ORTHO05D009050 1.7e-66 257.3 285 73.3
Zm00001eb237210 Zea mays HOM05D007176 ORTHO05D009050 1.2e-64 251.1 346 62.7
HPP92_010126 Vanilla planifolia HOM05D007176 ORTHO05D009050 6.7e-63 245.4 289 73.7
BraA09t40553Z Brassica rapa HOM05D000032 ORTHO05D001620 2.2e-61 240.4 277 65.0
BcaC02g10014 Brassica carinata HOM05D007176 ORTHO05D009050 5.3e-60 235.7 296 69.9
PSO675G7508 Papaver somniferum HOM05D007176 ORTHO05D009050 1.2e-59 234.6 285 63.9
VMungo0720G0788 Vigna mungo HOM05D007176 ORTHO05D009050 1.0e-58 231.5 405 43.7
BolC4t24963H Brassica oleracea HOM05D000032 ORTHO05D001620 7.4e-54 215.3 276 71.0
SEGI_09769 Sequoiadendron giganteum HOM05D007176 ORTHO05D009050 2.8e-53 213.4 289 68.5
SMO118G0524 Selaginella moellendorffii HOM05D007176 ORTHO05D009050 2.4e-52 210.3 339 54.6
C04p33960 Brassica napus HOM05D007176 ORTHO05D009050 1.5e-51 207.6 276 69.9
Psat6g088000 Pisum sativum HOM05D007176 ORTHO05D009050 3.5e-51 206.5 348 60.3
unitig_736.g22301 Utricularia gibba HOM05D007176 ORTHO05D009050 1.0e-50 204.9 394 54.6
Nitab4.5_0000009g0020 Nicotiana tabacum HOM05D007176 ORTHO05D009050 1.3e-50 204.5 417 35.3
SGA_v2.0_scaffold274G46490 Striga asiatica HOM05D007176 ORTHO05D009050 6.5e-50 202.2 137 70.8
Ciclev10012430m.g Citrus clementina HOM05D007176 ORTHO05D009050 2.5e-49 200.3 141 68.8
Pp3c23_2930 Physcomitrium patens HOM05D007176 ORTHO05D009050 1.4e-47 194.5 348 50.6
Atru.chr8.1185 Acer truncatum HOM05D007176 ORTHO05D009050 6.7e-47 192.2 253 73.9
Hund24823 Selenicereus undatus HOM05D007176 ORTHO05D009050 1.1e-41 174.9 120 69.2
Phvul.007G261900 Phaseolus vulgaris HOM05D007176 ORTHO05D009050 2.5e-41 173.7 294 63.9
AagrBONN_evm.TU.Sc2ySwM_228.1251 Anthoceros agrestis HOM05D007176 ORTHO05D009050 4.4e-38 162.9 341 50.4
arahy.Tifrunner.gnm1.ann1.0S64XP Arachis hypogaea HOM05D007176 ORTHO05D009050 4.5e-35 152.9 273 43.2
A04p02540 Brassica napus HOM05D000032 ORTHO05D001620 2.3e-31 140.6 293 39.9
Hund24819 Selenicereus undatus HOM05D007176 ORTHO05D001610 8.3e-29 132.1 126 56.3
HanXRQChr05g0140621 Helianthus annuus HOM05D007176 ORTHO05D009050 3.1e-28 130.2 107 63.6
HanXRQChr10g0316231 Helianthus annuus HOM05D007176 ORTHO05D009050 3.1e-28 130.2 107 63.6
ATR0001G043 Amborella trichopoda HOM05D007176 ORTHO05D009050 1.1e-25 121.7 275 44.0
Mapoly0209s0007 Marchantia polymorpha HOM05D007176 ORTHO05D009050 4.2e-25 119.8 130 48.5
AUR62015309 Chenopodium quinoa HOM05D007176 ORTHO05D009050 1.0e-23 115.2 108 54.6
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 8.3e-21 105.5 271 28.8


User provided reference genes

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