Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.9e-100 368.6 193 100.0
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 7.1e-99 364.0 193 99.0
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 7.1e-99 364.0 193 99.0
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 1.6e-98 362.8 193 98.4
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 1.5e-96 356.3 193 97.4
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 3.4e-93 345.1 194 93.3
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 6.4e-92 340.9 193 91.2
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 3.2e-91 338.6 193 92.2
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 7.9e-90 334.0 194 90.7
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 1.0e-89 333.6 193 90.7
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 1.8e-89 332.8 195 90.8
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 3.9e-89 331.6 194 90.2
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 5.1e-89 331.3 193 89.6
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 2.5e-88 328.9 194 88.1
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 1.6e-87 326.2 193 88.6
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 2.1e-87 325.9 193 88.6
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 2.8e-87 325.5 193 88.1
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 3.7e-87 325.1 193 89.1
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 4.8e-87 324.7 193 88.6
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 6.2e-87 324.3 193 88.1
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 8.2e-87 323.9 193 88.6
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 1.4e-86 323.2 193 88.1
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 2.4e-86 322.4 195 86.7
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 2.4e-86 322.4 195 86.7
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 2.4e-86 322.4 193 87.6
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 3.1e-86 322.0 194 87.1
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 4.0e-86 321.6 195 87.2
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 4.0e-86 321.6 195 87.2
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 4.0e-86 321.6 195 87.2
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 5.3e-86 321.2 195 87.2
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 9.0e-86 320.5 195 86.2
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 2.0e-85 319.3 195 87.2
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 3.4e-85 318.5 194 86.6
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 1.0e-84 317.0 195 87.2
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 3.8e-84 315.1 193 86.0
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 4.9e-84 314.7 195 84.6
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.1e-83 313.5 195 85.6
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 1.4e-83 313.2 194 85.1
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 1.9e-83 312.8 193 83.9
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 1.9e-83 312.8 193 83.9
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 7.1e-83 310.8 191 86.9
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 7.1e-83 310.8 194 85.6
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 1.6e-82 309.7 193 84.5
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 2.1e-82 309.3 194 85.1
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 4.6e-82 308.1 193 83.9
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 4.6e-82 308.1 194 84.0
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 7.9e-82 307.4 182 90.1
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 7.9e-82 307.4 195 83.6
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.0e-81 307.0 194 83.5
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.0e-81 307.0 194 84.0
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 1.0e-81 307.0 194 83.5
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 1.0e-81 307.0 192 85.9
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 1.3e-81 306.6 191 85.9
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 1.8e-81 306.2 195 82.6
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 2.3e-81 305.8 188 86.2
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 2.3e-81 305.8 193 83.9
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 3.9e-81 305.1 193 83.4
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 6.7e-81 304.3 194 83.0
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 6.7e-81 304.3 194 83.0
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 8.7e-81 303.9 194 82.5
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 1.5e-80 303.1 195 82.1
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 1.9e-80 302.8 195 82.6
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 1.9e-80 302.8 195 82.6
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 4.3e-80 301.6 193 80.8
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 7.4e-80 300.8 195 82.1
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 7.4e-80 300.8 195 82.1
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 4.8e-79 298.1 189 82.5
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 4.8e-79 298.1 194 83.0
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 6.3e-79 297.7 191 82.7
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 8.2e-79 297.4 195 81.5
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 8.2e-79 297.4 195 81.5
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 8.2e-79 297.4 195 81.5
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 1.4e-78 296.6 190 82.1
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 5.3e-78 294.7 191 81.7
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 2.0e-77 292.7 190 84.2
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 4.5e-77 291.6 194 80.9
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 2.2e-76 289.3 194 80.4
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 2.2e-76 289.3 194 78.9
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 3.8e-76 288.5 198 78.3
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 6.5e-76 287.7 194 80.4
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 8.5e-76 287.3 190 80.0
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 8.5e-76 287.3 190 81.6
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 3.2e-75 285.4 194 78.4
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 4.2e-75 285.0 196 80.1
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 5.5e-75 284.6 189 79.9
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 5.5e-75 284.6 190 80.5
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 7.2e-75 284.3 194 79.4
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 6.1e-74 281.2 194 76.8
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.8e-73 279.6 190 77.4
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 5.1e-73 278.1 190 77.4
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 1.1e-72 276.9 193 76.2
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 1.3e-71 273.5 189 76.2
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 1.7e-71 273.1 196 76.0
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 3.7e-71 271.9 184 78.3
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 2.4e-70 269.2 197 71.6
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 1.2e-69 266.9 188 75.5
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 2.6e-69 265.8 195 74.9
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 2.9e-68 262.3 182 75.8
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 4.7e-66 255.0 174 79.3
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 1.4e-65 253.4 187 70.6
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 2.3e-65 252.7 184 70.7
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 3.9e-65 251.9 191 72.3
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 1.3e-63 246.9 200 66.0
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 1.1e-62 243.8 198 66.2
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 9.1e-62 240.7 189 67.2
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 4.5e-61 238.4 208 62.5
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 3.8e-60 235.3 185 67.0
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 1.9e-59 233.0 136 90.4
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 6.1e-58 228.0 195 69.2
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 1.1e-56 223.8 184 60.9
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 4.4e-56 221.9 136 88.2
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 5.3e-54 214.9 137 86.1
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.6e-53 213.4 193 63.7
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 3.4e-48 195.7 191 61.3
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 3.4e-48 195.7 167 66.5
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 7.7e-45 184.5 115 87.8
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 1.7e-44 183.3 132 76.5
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.9e-43 179.9 127 78.7
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.5e-43 179.5 191 55.0
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 5.4e-38 161.8 101 80.2
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 6.6e-36 154.8 135 68.1
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 2.0e-32 143.3 165 41.8
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 5.7e-32 141.7 96 77.1
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 3.2e-30 136.0 104 71.2
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 1.0e-28 131.0 106 68.9
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 3.5e-21 105.9 72 79.2
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 1.0e-20 104.4 72 83.3
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 2.5e-19 99.8 170 32.9
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 3.4e-16 89.4 46 87.0
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 9.8e-16 87.8 165 32.1
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 3.7e-15 85.9 78 65.4
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 3.1e-09 66.2 39 79.5
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 1.9e-06 57.0 54 64.8
SGA_v2.0_scaffold472G52090 Striga asiatica HOM05D005910 ORTHO05D007088 4.1e-06 55.8 54 64.8


User provided reference genes

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