Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 4.6e-192 674.5 364 100.0
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 4.4e-150 535.0 331 90.0
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 2.8e-149 532.3 331 90.0
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 6.3e-149 531.2 331 88.2
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.0e-143 513.8 331 84.9
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 2.9e-141 505.8 327 84.4
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 2.4e-140 502.7 329 83.0
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.9e-124 449.9 337 73.9
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 5.4e-124 448.4 331 71.3
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 2.9e-117 426.0 337 69.1
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 7.1e-116 421.4 293 72.4
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 9.2e-116 421.0 261 79.3
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.6e-115 420.2 261 78.9
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.6e-115 420.2 261 78.9
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.6e-115 420.2 296 77.4
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 2.1e-115 419.9 293 72.7
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 2.1e-115 419.9 260 80.0
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 7.8e-115 417.9 261 79.7
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 2.3e-114 416.4 317 67.2
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 2.3e-114 416.4 261 78.5
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 3.0e-114 416.0 316 68.4
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 5.1e-114 415.2 301 74.4
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 5.1e-114 415.2 323 66.9
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 8.7e-114 414.5 261 78.9
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.1e-113 414.1 261 77.4
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.1e-113 414.1 261 78.5
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.5e-113 413.7 259 78.8
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.9e-113 413.3 261 79.3
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.3e-113 412.1 261 77.8
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 4.3e-113 412.1 316 67.7
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.3e-112 410.6 261 77.4
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 1.3e-112 410.6 340 64.4
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.6e-112 410.2 261 77.0
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.6e-112 410.2 261 75.9
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 2.1e-112 409.8 261 77.8
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 2.1e-112 409.8 311 67.8
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.8e-112 409.5 261 76.6
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 2.8e-112 409.5 261 77.4
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 2.8e-112 409.5 307 69.4
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.8e-112 409.5 261 75.5
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 2.8e-112 409.5 261 76.2
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 3.6e-112 409.1 316 69.9
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 8.1e-112 407.9 261 75.9
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 8.1e-112 407.9 261 76.2
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 8.1e-112 407.9 261 76.2
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.4e-111 407.1 296 70.3
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.4e-111 407.1 261 76.6
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.4e-111 406.4 261 75.9
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 2.4e-111 406.4 304 69.1
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 3.1e-111 406.0 261 75.1
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 4.0e-111 405.6 261 75.5
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 4.0e-111 405.6 261 76.6
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 5.3e-111 405.2 260 76.5
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 5.3e-111 405.2 332 65.4
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 6.9e-111 404.8 261 75.9
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 6.9e-111 404.8 261 75.5
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 9.0e-111 404.4 261 75.1
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 1.2e-110 404.1 261 75.5
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 1.2e-110 404.1 261 75.5
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 2.0e-110 403.3 261 74.7
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 2.0e-110 403.3 331 68.0
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 5.8e-110 401.7 261 74.3
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 5.8e-110 401.7 261 75.9
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 7.6e-110 401.4 261 74.7
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 9.9e-110 401.0 261 75.9
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 2.2e-109 399.8 261 75.5
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 2.9e-109 399.4 261 74.7
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 3.8e-109 399.1 307 66.8
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.4e-108 397.1 336 64.3
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 2.4e-108 396.4 261 74.7
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 2.4e-108 396.4 261 74.7
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 3.2e-108 396.0 261 72.4
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 4.2e-108 395.6 346 62.7
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 4.2e-108 395.6 261 74.7
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.6e-107 393.7 261 73.9
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 2.1e-107 393.3 279 70.3
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 2.7e-107 392.9 261 71.6
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 3.5e-107 392.5 261 73.2
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 7.8e-107 391.3 261 73.2
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 7.8e-107 391.3 261 73.9
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 1.3e-106 390.6 260 72.7
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 4.8e-104 382.1 261 73.6
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 8.1e-104 381.3 261 72.8
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 1.1e-103 380.9 231 83.1
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 3.1e-103 379.4 261 70.5
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 9.0e-103 377.9 260 70.4
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 4.5e-102 375.6 261 70.1
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 7.6e-102 374.8 261 69.3
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.3e-101 374.0 261 69.0
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 4.9e-101 372.1 260 69.6
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.1e-100 370.9 352 58.2
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 2.4e-100 369.8 261 70.1
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 3.2e-100 369.4 260 69.2
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.0e-98 364.4 365 56.2
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 3.9e-98 362.5 275 68.4
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 7.4e-97 358.2 387 52.7
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 6.9e-95 351.7 237 73.8
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.6e-94 349.7 269 65.1
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 4.5e-94 349.0 261 66.3
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 7.6e-94 348.2 261 67.8
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 7.9e-91 338.2 260 65.4
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 5.1e-90 335.5 231 69.7
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.5e-89 334.0 272 63.6
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 5.8e-86 322.0 231 71.0
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.3e-85 320.9 331 57.1
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.8e-85 319.3 261 64.0
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.9e-84 317.0 261 58.2
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.2e-83 314.3 235 66.0
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 5.1e-82 308.9 209 73.7
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 6.7e-82 308.5 262 56.9
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 5.1e-74 282.3 250 60.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 3.1e-71 273.1 189 72.5
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 4.5e-70 269.2 231 56.3
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 7.2e-68 261.9 242 58.7
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 1.5e-65 254.2 261 47.9
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.4e-63 247.7 184 68.5
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 3.5e-62 243.0 195 64.1
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 8.5e-61 238.4 183 65.0
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 4.2e-60 236.1 261 45.6
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 2.1e-59 233.8 269 47.2
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 6.7e-58 228.8 160 73.8
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 1.3e-56 224.6 215 57.2
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 3.7e-56 223.0 229 55.5
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.2e-54 218.0 333 44.4
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 2.2e-53 213.8 260 39.6
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 6.8e-50 202.2 156 67.3
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 8.8e-50 201.8 129 72.9
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 1.5e-49 201.1 255 43.1
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.0e-49 200.7 116 81.0
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 4.4e-49 199.5 155 65.2
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 7.5e-49 198.7 123 79.7
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 2.7e-46 190.3 164 62.8
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 5.9e-46 189.1 105 81.9
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.9e-45 186.8 100 84.0
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.5e-44 183.7 187 52.9
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 5.5e-44 182.6 107 76.6
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 9.4e-44 181.8 159 60.4
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 9.4e-44 181.8 159 60.4
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.7e-43 179.5 101 80.2
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 2.6e-41 173.7 104 79.8
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 9.1e-39 165.2 259 35.1
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.5e-38 162.9 88 84.1
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 3.3e-36 156.8 99 69.7
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 1.5e-33 147.9 239 36.8
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 5.7e-33 146.0 82 76.8
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 6.3e-32 142.5 74 83.8
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 8.3e-32 142.1 72 88.9
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.1e-31 141.7 255 34.5
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 5.0e-29 132.9 72 81.9
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 5.0e-29 132.9 74 79.7
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 4.0e-26 123.2 62 87.1
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 1.6e-22 111.3 93 61.3
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.0e-22 110.9 56 82.1
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 5.0e-21 106.3 55 89.1
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 8.6e-21 105.5 56 80.4
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 2.8e-19 100.5 70 71.4
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 8.1e-19 99.0 59 71.2
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 2.6e-17 94.0 47 85.1
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 4.4e-17 93.2 47 89.4
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 3.7e-16 90.1 48 81.2
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 6.6e-13 79.3 114 38.6
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.3e-12 77.0 54 57.4
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 7.6e-09 65.9 100 37.0
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 9.2e-07 58.9 74 45.9
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 1.6e-06 58.2 68 47.1


User provided reference genes

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