Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 2.6e-56 221.9 113 100.0
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 8.2e-55 216.9 113 97.3
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.8e-54 215.7 113 96.5
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 6.5e-52 207.2 113 92.0
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 9.7e-48 193.4 113 85.8
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 9.4e-43 176.8 112 81.2
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 1.8e-41 172.6 113 76.1
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 8.8e-41 170.2 113 74.3
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 1.2e-32 143.3 107 65.4
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 4.4e-32 141.4 103 66.0
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 1.7e-31 139.4 111 59.5
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 2.2e-31 139.0 91 75.8
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 4.9e-31 137.9 98 68.4
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 1.4e-30 136.3 107 65.4
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 1.8e-30 136.0 108 62.0
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 7.0e-30 134.0 98 67.3
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 7.0e-30 134.0 108 63.0
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 2.7e-29 132.1 97 67.0
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.3e-28 129.8 108 61.1
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 1.3e-28 129.8 105 62.9
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 2.3e-28 129.0 108 61.1
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 3.8e-28 128.3 94 63.8
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 3.8e-28 128.3 94 63.8
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 6.6e-28 127.5 95 64.2
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 6.6e-28 127.5 106 61.3
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 6.6e-28 127.5 101 59.4
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 5.6e-27 124.4 97 66.0
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 5.6e-27 124.4 117 54.7
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 5.6e-27 124.4 115 55.7
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 5.6e-27 124.4 92 63.0
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 7.3e-27 124.0 92 67.4
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 7.3e-27 124.0 95 65.3
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 1.2e-26 123.2 106 59.4
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 2.1e-26 122.5 105 59.0
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 2.1e-26 122.5 100 62.0
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 2.8e-26 122.1 107 57.9
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 2.8e-26 122.1 115 55.7
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 4.7e-26 121.3 117 53.8
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 4.7e-26 121.3 117 53.8
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 6.1e-26 120.9 109 56.9
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 6.1e-26 120.9 115 53.9
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 8.0e-26 120.6 106 56.6
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 8.0e-26 120.6 93 61.3
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 8.0e-26 120.6 115 54.8
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 1.0e-25 120.2 93 64.5
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 1.4e-25 119.8 91 65.9
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 1.8e-25 119.4 115 52.2
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 3.0e-25 118.6 105 56.2
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 4.0e-25 118.2 91 62.6
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 4.0e-25 118.2 113 50.4
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 6.8e-25 117.5 91 62.6
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 1.2e-24 116.7 90 64.4
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 1.2e-24 116.7 112 52.7
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 1.5e-24 116.3 86 66.3
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 2.0e-24 115.9 88 64.8
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 2.0e-24 115.9 92 63.0
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 2.6e-24 115.5 92 60.9
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 2.6e-24 115.5 94 61.7
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 3.4e-24 115.2 95 57.9
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 4.4e-24 114.8 88 64.8
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 4.4e-24 114.8 88 64.8
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 4.4e-24 114.8 88 64.8
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 7.5e-24 114.0 92 59.8
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 9.8e-24 113.6 101 57.4
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 4.9e-23 111.3 90 57.8
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 2.4e-22 109.0 92 58.7
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 3.2e-22 108.6 103 52.4
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 5.4e-22 107.8 96 58.3
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 5.4e-22 107.8 94 56.4
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 7.0e-22 107.5 95 57.9
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 7.0e-22 107.5 92 55.4
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 1.6e-21 106.3 96 59.4
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 5.9e-21 104.4 92 57.6
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 5.0e-20 101.3 87 60.9
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 6.6e-20 100.9 82 62.2
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 6.6e-20 100.9 117 47.0
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 1.5e-19 99.8 94 51.1
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 1.9e-19 99.4 92 54.3
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 9.5e-19 97.1 93 52.7
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 3.6e-18 95.1 112 42.9
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 1.4e-17 93.2 91 54.9
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 9.8e-16 87.0 95 48.4
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 3.7e-15 85.1 78 59.0
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 1.9e-14 82.8 90 51.1
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 1.9e-14 82.8 86 53.5
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 2.7e-13 79.0 89 50.6
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 2.5e-11 72.4 84 48.8
Lsat_1_v5_gn_2_132940 Lactuca sativa HOM05D007920 ORTHO05D009993 8.9e-09 63.9 75 46.7
Hma1.2p1_0586F.1_g183770 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 1.7e-07 59.7 74 45.9


User provided reference genes

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