Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0840 Fragaria x ananassa HOM05D007404 ORTHO05D009281 1.5e-156 556.2 287 100.0
FAN14G5090 Fragaria x ananassa HOM05D007404 ORTHO05D009281 7.0e-143 510.8 300 91.7
FAN05G3976 Fragaria x ananassa HOM05D007404 ORTHO05D009281 3.8e-141 505.0 290 92.1
FAN09G0350 Fragaria x ananassa HOM05D007404 ORTHO05D009281 5.4e-135 484.6 263 95.4
FvH4_6g21130 Fragaria vesca HOM05D007404 ORTHO05D009281 9.8e-129 463.8 260 94.6
RcHm_v2.0_Chr3g0477561 Rosa chinensis HOM05D007404 ORTHO05D009281 1.5e-108 396.7 262 80.2
MD14G1045900 Malus domestica HOM05D007404 ORTHO05D009281 1.3e-80 303.9 267 64.0
Prupe.7G088400 Prunus persica HOM05D007404 ORTHO05D009281 5.1e-77 292.0 262 62.6
CiPaw.09G024800 Carya illinoinensis HOM05D007404 ORTHO05D009281 9.4e-55 218.0 267 50.9
QL07p025963 Quercus lobata HOM05D007404 ORTHO05D009281 4.7e-54 215.7 287 48.4
Cfa020098 Carpinus fangiana HOM05D007404 ORTHO05D009281 1.0e-53 214.5 260 51.2
Haze_20093 Corylus avellana HOM05D007404 ORTHO05D009281 3.7e-51 206.1 258 49.2
CANSAT64G1742 Cannabis sativa HOM05D007404 ORTHO05D009281 7.0e-50 201.8 261 50.2
Duzib093G1799 Durio zibethinus HOM05D007404 ORTHO05D009281 7.7e-49 198.4 260 44.6
Dinv25087 Davidia involucrata HOM05D007404 ORTHO05D009281 2.2e-48 196.8 256 46.1
CiPaw.10G021900 Carya illinoinensis HOM05D007404 ORTHO05D009281 3.2e-47 193.0 267 47.2
Actinidia03848 Actinidia chinensis HOM05D007404 ORTHO05D009281 7.2e-47 191.8 256 49.2
Atru.chr8.1254 Acer truncatum HOM05D007404 ORTHO05D009281 2.7e-46 189.9 238 48.7
Thecc.05G182600 Theobroma cacao HOM05D007404 ORTHO05D009281 2.7e-46 189.9 260 44.2
Manes.08G038100 Manihot esculenta HOM05D007404 ORTHO05D009281 6.1e-46 188.7 249 45.8
TWI74G0134 Tripterygium wilfordii HOM05D007404 ORTHO05D009281 2.2e-43 180.3 246 44.7
Potri.006G198500 Populus trichocarpa HOM05D007404 ORTHO05D009281 5.3e-42 175.6 261 45.2
COL.COLO4_29466 Corchorus olitorius HOM05D007404 ORTHO05D009281 1.2e-41 174.5 260 40.8
ClCG01G015070 Citrullus lanatus HOM05D007404 ORTHO05D009281 3.5e-41 172.9 279 42.7
Cpa.g.sc222.4 Carica papaya HOM05D007404 ORTHO05D009281 4.5e-41 172.6 259 42.9
Sabra06G0152600 Salix brachista HOM05D007404 ORTHO05D009281 1.3e-40 171.0 258 42.6
Hma1.2p1_0304F.1_g119261 Hydrangea macrophylla HOM05D007404 ORTHO05D009281 1.7e-40 170.6 225 45.3
Ciclev10012555m.g Citrus clementina HOM05D007404 ORTHO05D009281 2.9e-40 169.9 231 45.5
MELO3C024593.2 Cucumis melo HOM05D007404 ORTHO05D009281 1.5e-39 167.5 248 43.5
Rhsim03G0257900 Rhododendron simsii HOM05D007404 ORTHO05D009281 4.2e-39 166.0 256 43.0
Cc06_g07050 Coffea canephora HOM05D007404 ORTHO05D009281 7.2e-39 165.2 260 41.9
Actinidia03958 Actinidia chinensis HOM05D007404 ORTHO05D009281 1.6e-38 164.1 194 51.5
Lalb_Chr25g0287801 Lupinus albus HOM05D007404 ORTHO05D009281 6.1e-38 162.2 260 43.1
CsaV3_6G041180 Cucumis sativus L. HOM05D007404 ORTHO05D009281 1.4e-37 161.0 246 43.9
Phvul.001G199200 Phaseolus vulgaris HOM05D007404 ORTHO05D009281 3.0e-37 159.8 234 45.7
VMungo1383G2609 Vigna mungo HOM05D007404 ORTHO05D009281 4.0e-37 159.5 258 43.8
Glyma.03G205600 Glycine max HOM05D007404 ORTHO05D009281 5.2e-37 159.1 258 42.6
TPR.G14403 Trifolium pratense HOM05D007404 ORTHO05D009281 5.2e-37 159.1 233 44.2
Eucgr.A02534 Eucalyptus grandis HOM05D007404 ORTHO05D009281 1.5e-36 157.5 227 44.1
Lj1g0004547 Lotus japonicus HOM05D007404 ORTHO05D009281 2.0e-36 157.1 255 43.9
arahy.Tifrunner.gnm1.ann1.T424Z8 Arachis hypogaea HOM05D007404 ORTHO05D009281 7.5e-36 155.2 239 43.1
vmacro06064 Vaccinium macrocarpon HOM05D007404 ORTHO05D009281 1.3e-35 154.5 249 43.4
Glyma.19G203100 Glycine max HOM05D007404 ORTHO05D009281 2.2e-35 153.7 260 41.9
Ca_09089_v3 Cicer arietinum L. HOM05D007404 ORTHO05D009281 3.7e-35 152.9 245 42.4
Medtr7g107080 Medicago truncatula HOM05D007404 ORTHO05D009281 6.3e-35 152.1 225 43.6
Gorai.002G232900 Gossypium raimondii HOM05D007404 ORTHO05D009281 1.4e-34 151.0 255 38.4
Lj1C1059T6 Lonicera japonica HOM05D007404 ORTHO05D009281 9.1e-34 148.3 259 40.5
Sed0004973 Sechium edule HOM05D007404 ORTHO05D009281 3.5e-33 146.4 260 42.7
Nn2g14441 Nelumbo nucifera HOM05D007404 ORTHO05D009281 5.9e-33 145.6 272 39.3
DCAR_013466 Daucus carota HOM05D007404 ORTHO05D009281 1.0e-32 144.8 230 43.5
Peaxi162Scf00211g00002 Petunia axillaris HOM05D007404 ORTHO05D009281 1.0e-32 144.8 272 36.4
Gohir.A01G199200 Gossypium hirsutum HOM05D007404 ORTHO05D009281 1.3e-32 144.4 254 37.0
Psat3g026720 Pisum sativum HOM05D007404 ORTHO05D009281 1.3e-32 144.4 259 39.0
CAN.G13.10 Capsicum annuum HOM05D007404 ORTHO05D009281 2.2e-32 143.7 224 39.3
PGSC0003DMG400022875 Solanum tuberosum HOM05D007404 ORTHO05D009281 8.5e-32 141.7 224 38.8
Dinv11908 Davidia involucrata HOM05D007404 ORTHO05D009281 1.9e-31 140.6 210 42.9
Nn2g14440 Nelumbo nucifera HOM05D007404 ORTHO05D009281 3.2e-31 139.8 267 38.2
Solyc11g045270.3 Solanum lycopersicum HOM05D007404 ORTHO05D009281 5.5e-31 139.0 224 39.3
Sopen11g020730 Solanum pennellii HOM05D007404 ORTHO05D009281 2.7e-30 136.7 227 37.9
TAR623G1670 Trochodendron aralioides HOM05D007404 ORTHO05D009281 1.8e-29 134.0 270 38.1
Nitab4.5_0012268g0010 Nicotiana tabacum HOM05D007404 ORTHO05D009281 5.2e-29 132.5 262 35.9
Oeu063091.1 Olea europaea HOM05D007404 ORTHO05D009281 8.8e-29 131.7 225 38.2
Gohir.D01G189300 Gossypium hirsutum HOM05D007404 ORTHO05D009281 1.5e-28 131.0 255 36.5
Nitab4.5_0000117g0060 Nicotiana tabacum HOM05D007404 ORTHO05D009281 2.6e-28 130.2 262 35.1
ECA238G2201 Erigeron canadensis HOM05D007404 ORTHO05D009281 4.4e-28 129.4 245 39.2
FAN14G2589 Fragaria x ananassa HOM05D007404 ORTHO05D009281 2.8e-27 126.7 173 50.3
PGR004G0377 Punica granatum HOM05D007404 ORTHO05D009281 2.8e-27 126.7 258 39.1
Migut.J00747 Erythranthe guttata HOM05D007404 ORTHO05D009281 1.4e-26 124.4 227 37.4
MBI14_g28309_MAGBIO Magnolia biondii HOM05D007404 ORTHO05D009281 1.8e-26 124.0 283 33.2
Aqoxy1G00574 Aquilegia oxysepala HOM05D007404 ORTHO05D009281 9.1e-26 121.7 227 37.4
EL10Ac5g11794 Beta vulgaris HOM05D007404 ORTHO05D009281 1.6e-25 120.9 255 34.9
MSTRG.19336 Avicennia marina HOM05D007404 ORTHO05D009281 3.5e-25 119.8 232 36.6
AUR62038411 Chenopodium quinoa HOM05D007404 ORTHO05D009281 1.0e-24 118.2 241 36.5
Lsat_1_v5_gn_2_102100 Lactuca sativa HOM05D007404 ORTHO05D009281 1.0e-24 118.2 218 40.4
AUR62036300 Chenopodium quinoa HOM05D007404 ORTHO05D009281 2.5e-23 113.6 239 34.7
THA.LOC104826786 Tarenaya hassleriana HOM05D007404 ORTHO05D009281 5.5e-23 112.5 272 36.0
HanXRQChr14g0453181 Helianthus annuus HOM05D007404 ORTHO05D009281 1.6e-22 110.9 104 56.7
Ah.02g113930 Amaranthus hybridus HOM05D007404 ORTHO05D009281 2.8e-22 110.2 250 34.4
Hund10780 Selenicereus undatus HOM05D007404 ORTHO05D009281 2.8e-22 110.2 270 33.0
Sc07g0007250 Simmondsia chinensis HOM05D007404 ORTHO05D009281 2.8e-22 110.2 257 37.0
unitig_26.g9157 Utricularia gibba HOM05D000495 ORTHO05D009281 2.8e-22 110.2 258 32.6
SGA_v2.0_scaffold112G31676 Striga asiatica HOM05D007404 ORTHO05D009281 2.3e-21 107.1 224 35.3
ATR0686G215 Amborella trichopoda HOM05D007404 ORTHO05D009281 8.9e-21 105.1 287 29.3
SEGI_39351 Sequoiadendron giganteum HOM05D007404 ORTHO05D009281 1.2e-17 94.7 88 53.4
HPP92_023288 Vanilla planifolia HOM05D007404 ORTHO05D009281 2.7e-17 93.6 81 51.9
CDE09G0274 Ceratophyllum demersum HOM05D007404 ORTHO05D009281 1.7e-16 90.9 236 30.5
Aa31LG3G5700 Aethionema arabicum HOM05D007404 ORTHO05D009281 1.1e-15 88.2 80 53.8
Sp3g10090 Schrenkiella parvula HOM05D007404 ORTHO05D009281 1.1e-15 88.2 78 53.8
BcaB06g25568 Brassica carinata HOM05D007404 ORTHO05D009281 3.3e-15 86.7 146 38.4
BcaC05g29316 Brassica carinata HOM05D007404 ORTHO05D009281 1.2e-14 84.7 91 45.1
A05p37490 Brassica napus HOM05D007404 ORTHO05D009281 1.2e-14 84.7 91 45.1
C05p56050 Brassica napus HOM05D007404 ORTHO05D009281 1.2e-14 84.7 91 45.1
BolC5t34272H Brassica oleracea HOM05D007404 ORTHO05D009281 1.2e-14 84.7 91 45.1
BraA05t22547Z Brassica rapa HOM05D007404 ORTHO05D009281 1.2e-14 84.7 91 45.1
AT3G11890 Arabidopsis thaliana HOM05D007404 ORTHO05D009281 1.6e-14 84.3 91 45.1
Thhalv10020684m.g Eutrema salsugineum HOM05D007404 ORTHO05D009281 1.6e-14 84.3 108 39.8
CARHR086420 Cardamine hirsuta HOM05D007404 ORTHO05D009281 2.8e-14 83.6 91 46.2
Carub.0003s1121 Capsella rubella HOM05D007404 ORTHO05D009281 4.7e-14 82.8 99 41.4
Os08g0378800 Oryza sativa ssp. japonica HOM05D007404 ORTHO05D009281 3.1e-13 80.1 82 46.3
Zm00001eb170760 Zea mays HOM05D007404 ORTHO05D009281 5.8e-12 75.9 239 27.2
FAN05G4411 Fragaria x ananassa HOM05D007404 ORTHO05D009281 9.8e-12 75.1 140 41.4
Mapoly0022s0106 Marchantia polymorpha HOM05D007404 ORTHO05D009281 6.0e-09 65.9 99 39.4
AagrBONN_evm.TU.Sc2ySwM_340.357 Anthoceros agrestis HOM05D007404 ORTHO05D009281 7.3e-07 58.9 64 45.3
GSVIVG01022504001 Vitis vinifera HOM05D007404 ORTHO05D009281 1.2e-06 58.2 104 39.4


User provided reference genes

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