Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 4.5e-215 751.1 420 100.0
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.6e-202 708.8 420 95.0
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.3e-202 708.4 420 95.0
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.2e-201 705.7 420 94.8
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 4.0e-171 605.1 429 82.1
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 2.9e-169 599.0 425 84.0
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.9e-169 599.0 425 84.0
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.7e-169 598.6 425 83.8
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 1.6e-148 530.0 439 69.0
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 1.1e-136 490.7 437 64.8
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 7.4e-133 478.0 422 64.0
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 3.7e-132 475.7 425 63.8
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 6.2e-132 474.9 425 64.5
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 1.2e-130 470.7 379 67.5
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 2.6e-130 469.5 428 64.3
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 5.8e-130 468.4 424 66.0
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 9.9e-130 467.6 426 62.2
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 3.8e-129 465.7 427 63.2
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 1.6e-127 460.3 427 61.4
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 1.6e-127 460.3 425 62.8
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 3.5e-127 459.1 427 61.6
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 6.0e-127 458.4 426 62.2
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 1.3e-126 457.2 422 62.1
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 1.5e-125 453.8 428 61.0
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 8.2e-124 448.0 343 70.8
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 8.2e-124 448.0 425 61.4
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 1.1e-123 447.6 423 61.0
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 1.4e-123 447.2 428 61.0
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 1.2e-122 444.1 425 60.9
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 1.2e-122 444.1 337 70.0
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 1.5e-122 443.7 422 60.2
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 2.0e-122 443.4 428 59.6
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 2.0e-122 443.4 438 60.7
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 4.5e-122 442.2 427 60.9
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 1.3e-121 440.7 425 59.8
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 2.2e-121 439.9 422 60.2
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 2.2e-121 439.9 422 60.0
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 3.8e-121 439.1 424 64.6
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 6.5e-121 438.3 422 60.7
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 1.1e-120 437.6 430 63.0
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 3.2e-120 436.0 539 50.6
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 7.1e-120 434.9 426 59.2
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 7.1e-120 434.9 433 59.6
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 2.1e-119 433.3 339 69.9
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 2.1e-119 433.3 439 59.2
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 2.7e-119 433.0 423 59.6
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 2.7e-119 433.0 422 59.2
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 3.5e-119 432.6 427 59.5
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 6.0e-119 431.8 423 58.9
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 1.8e-118 430.3 430 57.7
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 3.9e-118 429.1 424 60.4
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 5.1e-118 428.7 427 59.3
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 5.1e-118 428.7 432 57.6
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 5.1e-118 428.7 427 59.0
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 8.7e-118 427.9 427 59.5
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 1.6e-116 423.7 426 58.2
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 1.4e-115 420.6 433 61.0
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 1.8e-115 420.2 431 57.1
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 3.1e-115 419.5 429 60.4
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 4.1e-115 419.1 430 57.7
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 6.9e-115 418.3 434 60.4
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 6.9e-115 418.3 423 58.6
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 9.0e-115 417.9 431 56.8
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 1.2e-114 417.5 431 60.8
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 1.2e-114 417.5 428 57.2
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 2.6e-114 416.4 435 57.9
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 1.7e-113 413.7 422 57.6
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 6.5e-113 411.8 432 59.3
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 1.1e-112 411.0 436 58.3
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 2.5e-112 409.8 439 58.3
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 2.5e-112 409.8 431 61.3
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 3.2e-112 409.5 427 57.1
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 3.6e-111 406.0 427 56.0
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 4.6e-111 405.6 334 66.8
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 1.0e-110 404.4 423 57.4
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 1.8e-110 403.7 455 53.8
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 1.8e-110 403.7 430 55.1
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 5.1e-110 402.1 440 58.2
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 6.7e-110 401.7 328 65.9
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 1.1e-109 401.0 333 65.5
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 1.9e-109 400.2 425 56.9
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 1.3e-108 397.5 424 55.4
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 4.8e-108 395.6 420 57.4
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 6.3e-108 395.2 445 58.7
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 1.8e-107 393.7 442 56.8
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 3.1e-107 392.9 395 58.0
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 6.9e-107 391.7 427 56.0
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 1.5e-106 390.6 428 56.1
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 2.0e-106 390.2 423 53.9
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 3.4e-106 389.4 429 59.4
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 4.5e-106 389.0 431 59.6
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 4.5e-106 389.0 435 57.7
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 7.7e-106 388.3 430 54.4
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 4.7e-103 379.0 432 58.6
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 8.8e-102 374.8 365 58.9
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 1.0e-94 351.3 268 71.3
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 3.9e-94 349.4 424 52.8
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 1.0e-89 334.7 381 55.1
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 3.6e-87 326.2 327 57.5
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 2.3e-86 323.6 347 54.2
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 1.2e-85 321.2 336 53.3
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 7.0e-83 312.0 338 58.0
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 1.1e-80 304.7 310 57.1
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 3.5e-74 283.1 264 57.2
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 4.5e-74 282.7 421 43.2
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 1.5e-69 267.7 332 50.9
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 2.3e-65 253.8 351 44.2
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 4.0e-62 243.0 329 45.3
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 1.9e-59 234.2 210 61.0
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 4.0e-54 216.5 350 38.6
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 2.2e-52 210.7 319 43.9
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 3.7e-44 183.3 122 79.5
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 6.2e-39 166.0 129 68.2
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 1.3e-36 158.3 215 48.4
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 6.0e-34 149.4 88 79.5
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 2.1e-18 97.8 309 26.9
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 2.5e-16 90.9 158 45.6
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 4.8e-15 86.7 71 62.0
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 9.3e-11 72.4 66 56.1
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 2.7e-10 70.9 46 71.7
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 3.5e-10 70.5 145 31.7
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 4.6e-10 70.1 46 71.7
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 1.1e-08 65.5 323 24.5


User provided reference genes

Program Settings