Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0764 Fragaria x ananassa HOM05D006085 ORTHO05D007559 8.0e-196 686.8 323 100.0
FvH4_6g26520 Fragaria vesca HOM05D006085 ORTHO05D007559 9.8e-186 653.3 320 96.2
RcHm_v2.0_Chr2g0127641 Rosa chinensis HOM05D006085 ORTHO05D007559 2.3e-174 615.5 320 90.6
MD17G1236100 Malus domestica HOM05D006085 ORTHO05D007559 1.5e-157 559.7 320 80.3
Prupe.3G189400 Prunus persica HOM05D006085 ORTHO05D007559 3.3e-157 558.5 318 80.8
CiPaw.03G179300 Carya illinoinensis HOM05D006085 ORTHO05D007559 3.8e-145 518.5 320 76.9
Haze_13204 Corylus avellana HOM05D006085 ORTHO05D007559 6.7e-142 507.7 333 72.1
Rhsim06G0139100 Rhododendron simsii HOM05D006085 ORTHO05D007559 2.8e-140 502.3 335 72.2
TWI59G1154 Tripterygium wilfordii HOM05D006085 ORTHO05D007559 3.7e-140 501.9 320 73.8
GSVIVG01020577001 Vitis vinifera HOM05D006085 ORTHO05D007559 1.1e-139 500.4 320 73.4
QL08p039688 Quercus lobata HOM05D006085 ORTHO05D007559 9.0e-139 497.3 319 73.7
TAR626G0071 Trochodendron aralioides HOM05D006085 ORTHO05D007559 2.0e-138 496.1 318 72.6
Lj8C109T7 Lonicera japonica HOM05D006085 ORTHO05D007559 4.5e-138 495.0 320 71.9
CANSAT64G0553 Cannabis sativa HOM05D006085 ORTHO05D007559 6.5e-137 491.1 321 71.7
Duzib052G1056 Durio zibethinus HOM05D006085 ORTHO05D007559 8.4e-137 490.7 320 70.3
Ca_18934_v3 Cicer arietinum L. HOM05D006085 ORTHO05D007559 4.2e-136 488.4 320 70.9
Thecc.02G182800 Theobroma cacao HOM05D006085 ORTHO05D007559 5.5e-136 488.0 320 71.2
Actinidia30466 Actinidia chinensis HOM05D006085 ORTHO05D007559 7.1e-136 487.6 320 71.9
Sc12g0003150 Simmondsia chinensis HOM05D006085 ORTHO05D007559 7.1e-136 487.6 320 71.2
Ciclev10014891m.g Citrus clementina HOM05D006085 ORTHO05D007559 9.3e-136 487.3 320 72.5
Glyma.12G116400 Glycine max HOM05D006085 ORTHO05D007559 2.7e-135 485.7 320 69.7
Hma1.2p1_0002F.1_g002100 Hydrangea macrophylla HOM05D006085 ORTHO05D007559 6.0e-135 484.6 325 71.1
vmacro12328 Vaccinium macrocarpon HOM05D006085 ORTHO05D007559 6.0e-135 484.6 322 71.4
Nn1g04152 Nelumbo nucifera HOM05D006085 ORTHO05D007559 1.3e-134 483.4 320 69.4
CsaV3_7G005870 Cucumis sativus L. HOM05D006085 ORTHO05D007559 2.3e-134 482.6 320 69.7
CSS0044112 Camellia sinensis var. sinensis HOM05D006085 ORTHO05D007559 3.9e-134 481.9 320 70.9
Gohir.A13G055500 Gossypium hirsutum HOM05D006085 ORTHO05D007559 3.9e-134 481.9 320 70.3
Lj3g0015664 Lotus japonicus HOM05D006085 ORTHO05D007559 3.9e-134 481.9 320 70.3
Atru.chr6.2894 Acer truncatum HOM05D006085 ORTHO05D007559 6.7e-134 481.1 321 72.0
Lalb_Chr19g0135161 Lupinus albus HOM05D006085 ORTHO05D007559 6.7e-134 481.1 320 69.4
THA.LOC104804055 Tarenaya hassleriana HOM05D006085 ORTHO05D007559 8.7e-134 480.7 320 69.7
MELO3C018706.2 Cucumis melo HOM05D006085 ORTHO05D007559 1.5e-133 479.9 320 69.4
Manes.13G147400 Manihot esculenta HOM05D006085 ORTHO05D007559 1.5e-133 479.9 320 69.7
Gohir.D13G066600 Gossypium hirsutum HOM05D006085 ORTHO05D007559 1.9e-133 479.6 320 70.0
Prupe.3G139600 Prunus persica HOM05D006085 ORTHO05D007559 1.9e-133 479.6 319 72.4
Glyma.06G290500 Glycine max HOM05D006085 ORTHO05D007559 4.3e-133 478.4 320 68.8
Phvul.011G125900 Phaseolus vulgaris HOM05D006085 ORTHO05D007559 5.7e-133 478.0 320 68.4
Medtr4g078555 Medicago truncatula HOM05D006085 ORTHO05D007559 7.4e-133 477.6 320 70.0
Gorai.013G075800 Gossypium raimondii HOM05D006085 ORTHO05D007559 9.6e-133 477.2 320 69.7
Potri.007G139000 Populus trichocarpa HOM05D006085 ORTHO05D007559 2.8e-132 475.7 320 70.3
MSTRG.15247 Avicennia marina HOM05D006085 ORTHO05D007559 6.9e-131 471.1 320 70.3
Psat7g168600 Pisum sativum HOM05D006085 ORTHO05D007559 2.0e-130 469.5 320 68.4
PGR042G2089 Punica granatum HOM05D006085 ORTHO05D007559 8.5e-129 464.2 320 68.4
arahy.Tifrunner.gnm1.ann1.C4PCKW Arachis hypogaea HOM05D006085 ORTHO05D007559 3.2e-128 462.2 346 63.9
AL3G53720 Arabidopsis lyrata HOM05D006085 ORTHO05D007559 9.3e-128 460.7 320 66.9
Sabra07G0112000 Salix brachista HOM05D006085 ORTHO05D007559 2.7e-127 459.1 320 68.8
AT2G20635 Arabidopsis thaliana HOM05D006085 ORTHO05D007559 7.9e-127 457.6 320 66.9
Migut.M00167 Erythranthe guttata HOM05D006085 ORTHO05D007559 2.3e-126 456.1 316 69.3
Hund01031 Selenicereus undatus HOM05D006085 ORTHO05D007559 8.7e-126 454.1 316 68.4
C08p42090 Brassica napus HOM05D006085 ORTHO05D007559 1.9e-125 453.0 320 65.9
CARHR111290 Cardamine hirsuta HOM05D006085 ORTHO05D007559 2.5e-125 452.6 320 65.3
Sp3g33890 Schrenkiella parvula HOM05D006085 ORTHO05D007559 2.5e-125 452.6 320 65.9
BcaC07g41200 Brassica carinata HOM05D006085 ORTHO05D007559 7.4e-125 451.1 320 65.6
BcaB08g34934 Brassica carinata HOM05D006085 ORTHO05D007559 2.2e-124 449.5 320 65.3
Solyc07g053820.3 Solanum lycopersicum HOM05D006085 ORTHO05D007559 6.3e-124 448.0 320 66.9
Sopen07g027790 Solanum pennellii HOM05D006085 ORTHO05D007559 1.8e-123 446.4 320 66.9
Carub.0003s3516 Capsella rubella HOM05D006085 ORTHO05D007559 9.1e-123 444.1 320 64.4
CAN.G209.32 Capsicum annuum HOM05D006085 ORTHO05D007559 1.2e-122 443.7 320 67.2
A09p58770 Brassica napus HOM05D006085 ORTHO05D007559 1.5e-122 443.4 331 63.7
Thhalv10001957m.g Eutrema salsugineum HOM05D006085 ORTHO05D007559 1.5e-122 443.4 320 64.4
SGA_v2.0_scaffold70G23511 Striga asiatica HOM05D006085 ORTHO05D007559 1.5e-122 443.4 305 69.2
BraA09t41263Z Brassica rapa HOM05D006085 ORTHO05D007559 3.4e-122 442.2 331 63.7
Lsat_1_v5_gn_4_66841 Lactuca sativa HOM05D006085 ORTHO05D007559 7.7e-122 441.0 322 64.9
Eucgr.A01834 Eucalyptus grandis HOM05D006085 ORTHO05D007559 2.2e-121 439.5 320 64.7
PGSC0003DMG400032825 Solanum tuberosum HOM05D006085 ORTHO05D007559 3.8e-121 438.7 322 65.8
PSO675G5281 Papaver somniferum HOM05D006085 ORTHO05D007559 6.5e-121 438.0 318 65.4
PSO541G4164 Papaver somniferum HOM05D006085 ORTHO05D007559 5.5e-120 434.9 318 64.8
Peaxi162Scf00981g00430 Petunia axillaris HOM05D006085 ORTHO05D007559 1.2e-119 433.7 342 63.2
Aa31LG8G17530 Aethionema arabicum HOM05D006085 ORTHO05D007559 6.1e-119 431.4 320 62.2
ATR0217G009 Amborella trichopoda HOM05D006085 ORTHO05D007559 7.9e-119 431.0 318 64.2
Aqoxy1G02363 Aquilegia oxysepala HOM05D006085 ORTHO05D007559 7.9e-119 431.0 319 64.3
HanXRQChr10g0284071 Helianthus annuus HOM05D006085 ORTHO05D007559 3.9e-118 428.7 320 63.4
AUR62038885 Chenopodium quinoa HOM05D006085 ORTHO05D007559 6.7e-118 427.9 320 63.4
ECA234G4181 Erigeron canadensis HOM05D006085 ORTHO05D007559 2.6e-117 426.0 321 63.9
AUR62038975 Chenopodium quinoa HOM05D006085 ORTHO05D007559 6.3e-116 421.4 320 62.2
Oeu036070.3 Olea europaea HOM05D006085 ORTHO05D007559 6.3e-116 421.4 276 72.5
DCAR_021253 Daucus carota HOM05D006085 ORTHO05D007559 1.2e-114 417.2 384 55.2
Manes.13G145916 Manihot esculenta HOM05D006085 ORTHO05D007559 5.0e-113 411.8 317 63.1
VMungo1127G1010 Vigna mungo HOM05D006085 ORTHO05D007559 5.0e-113 411.8 320 61.6
Ah.01g015320 Amaranthus hybridus HOM05D006085 ORTHO05D007559 8.5e-113 411.0 323 61.6
MBI18_g34208_MAGBIO Magnolia biondii HOM05D006085 ORTHO05D007559 2.5e-112 409.5 320 62.5
Sed0017729 Sechium edule HOM05D006085 ORTHO05D007559 7.9e-111 404.4 257 71.6
ClCG07G002490 Citrullus lanatus HOM05D006085 ORTHO05D007559 2.0e-109 399.8 320 60.6
HPP92_014185 Vanilla planifolia HOM05D006085 ORTHO05D007559 2.0e-109 399.8 313 60.7
Os07g0508500 Oryza sativa ssp. japonica HOM05D006085 ORTHO05D007559 1.6e-106 390.2 317 58.7
BolC8t51769H Brassica oleracea HOM05D006085 ORTHO05D007559 1.1e-104 384.0 320 59.1
arahy.Tifrunner.gnm1.ann1.RY71RI Arachis hypogaea HOM05D006085 ORTHO05D007559 1.6e-103 380.2 320 59.4
COL.COLO4_05950 Corchorus olitorius HOM05D006085 ORTHO05D007559 2.1e-103 379.8 320 60.0
CDE04G1826 Ceratophyllum demersum HOM05D006085 ORTHO05D007559 1.4e-102 377.1 258 68.6
Zm00001eb322380 Zea mays HOM05D006085 ORTHO05D007559 2.3e-102 376.3 320 58.4
arahy.Tifrunner.gnm1.ann1.9UNY9A Arachis hypogaea HOM05D006085 ORTHO05D007559 3.0e-102 375.9 316 59.2
arahy.Tifrunner.gnm1.ann1.UWD03M Arachis hypogaea HOM05D006085 ORTHO05D007559 7.5e-101 371.3 311 59.5
Cpa.g.sc83.67 Carica papaya HOM05D006085 ORTHO05D007559 1.4e-99 367.1 320 58.1
Pp3c20_12130 Physcomitrium patens HOM05D006085 ORTHO05D007559 1.1e-91 340.9 321 54.2
AagrBONN_evm.TU.Sc2ySwM_228.5266 Anthoceros agrestis HOM05D006085 ORTHO05D007559 1.6e-90 337.0 313 52.7
Manes.13G145813 Manihot esculenta HOM05D006085 ORTHO05D007559 7.2e-88 328.2 212 70.3
Manes.13G145816 Manihot esculenta HOM05D006085 ORTHO05D007559 6.1e-87 325.1 218 67.9
Mapoly0009s0056 Marchantia polymorpha HOM05D006085 ORTHO05D007559 2.6e-85 319.7 319 49.5
unitig_21.g20425 Utricularia gibba HOM05D006085 ORTHO05D007559 1.1e-83 314.3 253 60.1
Cc05_g07490 Coffea canephora HOM05D006085 ORTHO05D007559 5.6e-80 302.0 216 69.0
Nitab4.5_0001752g0030 Nicotiana tabacum HOM05D006085 ORTHO05D007559 8.9e-78 294.7 322 48.4
Nitab4.5_0000638g0100 Nicotiana tabacum HOM05D006085 ORTHO05D007559 5.4e-75 285.4 220 64.5
Manes.13G145812 Manihot esculenta HOM05D006085 ORTHO05D007559 2.8e-71 273.1 181 67.4
CBR_g48499 Chara braunii HOM05D006085 ORTHO05D007559 7.3e-64 248.4 331 39.9
TPR.G31028 Trifolium pratense HOM05D006085 ORTHO05D007559 1.9e-59 233.8 149 70.5
TPR.G23020 Trifolium pratense HOM05D006085 ORTHO05D007559 2.5e-48 196.8 128 69.5
Cc00_g12330 Coffea canephora HOM05D006085 ORTHO05D007559 4.7e-47 192.6 167 56.3
MCO16G047 Micromonas commoda HOM05D006085 ORTHO05D007559 1.9e-43 180.6 329 34.7
TPR.G6860 Trifolium pratense HOM05D006085 ORTHO05D007559 2.1e-42 177.2 142 62.7
TPR.G107 Trifolium pratense HOM05D006085 ORTHO05D007559 9.9e-29 131.7 79 75.9
Cc05_g07480 Coffea canephora HOM05D006085 ORTHO05D007559 1.1e-24 118.2 86 64.0
Cc00_g12340 Coffea canephora HOM05D006085 ORTHO05D007559 1.5e-24 117.9 93 64.5
Nitab4.5_0000638g0110 Nicotiana tabacum HOM05D006085 ORTHO05D007559 5.6e-24 115.9 86 61.6
TPR.G28910 Trifolium pratense HOM05D006085 ORTHO05D007559 9.0e-22 108.6 63 77.8
MD09G1244300 Malus domestica HOM05D006085 ORTHO05D007559 3.4e-21 106.7 89 61.8
Duzib132G0978 Durio zibethinus HOM05D006085 ORTHO05D007559 1.6e-15 87.8 91 46.2
MD08G1245500 Malus domestica HOM05D000083 ORTHO05D000196 6.9e-06 55.8 153 28.1
Rhsim06G0034900 Rhododendron simsii HOM05D000207 ORTHO05D001482 6.9e-06 55.8 207 27.1
TPR.G6836 Trifolium pratense HOM05D006085 ORTHO05D007559 9.1e-06 55.5 42 52.4


User provided reference genes

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