Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 9.0e-141 503.8 302 100.0
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 3.5e-137 491.9 303 98.0
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.8e-136 489.6 301 97.3
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 3.9e-136 488.4 303 97.4
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 2.2e-131 472.6 304 95.4
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 8.2e-110 401.0 303 75.9
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 7.0e-109 397.9 308 73.7
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 6.3e-102 374.8 308 72.7
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 1.5e-90 337.0 301 67.8
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 2.5e-90 336.3 305 69.5
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 2.7e-89 332.8 302 63.6
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 4.4e-87 325.5 313 61.0
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 7.5e-87 324.7 310 60.6
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 2.2e-86 323.2 235 77.9
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 3.7e-86 322.4 303 62.7
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 4.9e-86 322.0 294 67.7
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 4.9e-86 322.0 302 67.9
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 4.9e-86 322.0 302 70.9
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.1e-85 320.9 311 59.8
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 2.7e-84 316.2 234 73.9
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 5.9e-84 315.1 306 66.7
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 1.1e-82 310.8 303 63.7
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 1.1e-82 310.8 232 72.8
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.9e-82 310.1 230 74.3
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.1e-81 306.6 304 59.9
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 2.1e-81 306.6 328 66.8
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.6e-81 305.8 301 64.1
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 8.0e-81 304.7 299 58.2
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 8.0e-81 304.7 218 76.1
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 1.0e-80 304.3 231 73.2
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.4e-80 303.9 301 59.8
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 4.0e-80 302.4 231 71.9
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 8.9e-80 301.2 308 68.2
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 2.0e-79 300.1 304 59.5
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 2.0e-79 300.1 304 59.5
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 3.4e-79 299.3 302 63.9
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 4.4e-79 298.9 302 61.9
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 7.5e-79 298.1 302 58.9
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 1.3e-78 297.4 315 66.0
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.7e-78 297.0 302 61.6
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 8.3e-78 294.7 297 61.3
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 4.1e-77 292.4 306 56.9
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 9.2e-77 291.2 211 74.9
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 2.7e-76 289.7 306 57.5
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 3.5e-76 289.3 311 65.3
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 4.6e-76 288.9 309 56.6
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 5.9e-76 288.5 303 61.1
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 2.9e-75 286.2 303 57.1
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 1.1e-74 284.3 306 56.2
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 5.6e-74 282.0 306 55.9
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 7.3e-74 281.6 236 70.8
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 1.2e-73 280.8 314 53.8
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 1.2e-73 280.8 309 63.4
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 4.7e-73 278.9 218 71.6
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 4.7e-73 278.9 259 64.5
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 4.0e-72 275.8 247 66.0
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 5.2e-72 275.4 305 54.8
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 5.2e-72 275.4 297 55.2
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 6.8e-72 275.0 230 67.8
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 2.0e-71 273.5 235 64.3
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 3.4e-71 272.7 303 65.3
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 3.4e-71 272.7 228 65.4
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.3e-70 270.8 307 58.0
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.7e-70 270.4 302 62.6
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.9e-70 269.6 313 56.9
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 3.7e-70 269.2 302 57.9
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 8.3e-70 268.1 235 65.1
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 4.1e-69 265.8 235 63.8
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 4.6e-68 262.3 294 59.2
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 7.8e-68 261.5 312 55.8
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 1.0e-67 261.2 236 64.4
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 2.3e-67 260.0 241 63.9
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 2.3e-67 260.0 215 69.3
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.3e-67 260.0 232 65.1
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 5.0e-67 258.8 297 52.9
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 5.0e-67 258.8 297 54.9
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 5.0e-67 258.8 305 54.8
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 5.0e-67 258.8 300 54.0
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 8.6e-67 258.1 322 54.0
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 8.6e-67 258.1 293 53.2
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.1e-66 257.7 235 65.5
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.6e-66 255.4 241 64.3
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 1.2e-65 254.2 221 62.0
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 2.8e-65 253.1 315 49.5
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 4.0e-64 249.2 300 51.7
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 2.0e-63 246.9 313 51.4
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.0e-63 246.9 311 49.8
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 2.4e-61 240.0 348 48.0
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 3.2e-61 239.6 184 69.6
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 4.6e-60 235.7 332 45.8
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.7e-59 233.8 346 46.8
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 8.6e-59 231.5 239 62.3
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.1e-58 231.1 215 60.9
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.1e-58 231.1 329 50.5
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 1.5e-58 230.7 245 58.4
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 3.6e-57 226.1 226 59.3
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 6.2e-57 225.3 296 50.0
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.8e-56 223.8 227 57.7
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 2.6e-55 219.9 260 51.5
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 5.8e-55 218.8 242 57.0
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 2.2e-54 216.9 223 57.0
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 8.4e-54 214.9 233 58.8
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 3.2e-53 213.0 222 55.9
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 7.1e-53 211.8 251 54.6
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 1.6e-52 210.7 234 58.1
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 2.7e-52 209.9 226 58.8
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 3.5e-52 209.5 230 58.7
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 3.5e-52 209.5 231 57.1
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 3.5e-52 209.5 235 56.6
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 3.5e-52 209.5 237 55.3
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 4.6e-52 209.1 235 56.6
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 4.6e-52 209.1 235 56.6
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 6.0e-52 208.8 234 53.0
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.0e-51 208.0 237 57.4
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.0e-51 208.0 237 56.5
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.3e-51 207.6 227 53.7
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 1.7e-51 207.2 237 54.9
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 6.6e-51 205.3 236 55.9
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 1.1e-50 204.5 236 55.9
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 1.1e-50 204.5 237 55.7
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 1.5e-50 204.1 235 57.4
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 2.5e-50 203.4 236 55.9
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 4.3e-50 202.6 243 54.3
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 4.3e-50 202.6 227 55.1
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 1.2e-49 201.1 244 54.1
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 3.6e-49 199.5 112 90.2
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 6.2e-49 198.7 231 55.0
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.4e-48 197.6 223 55.6
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 1.4e-48 197.6 354 46.3
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.8e-48 197.2 225 55.6
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.8e-48 197.2 232 56.9
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 3.1e-48 196.4 228 55.3
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 3.1e-48 196.4 228 55.3
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 1.5e-47 194.1 232 54.7
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 3.4e-47 193.0 245 52.2
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.7e-46 190.7 220 51.4
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.9e-46 189.1 190 57.4
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 1.1e-45 188.0 213 57.7
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 1.9e-45 187.2 245 51.4
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 3.2e-45 186.4 220 55.5
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 4.2e-45 186.0 218 54.6
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 7.8e-44 181.8 315 43.5
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 3.9e-43 179.5 215 51.6
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 1.7e-38 164.1 214 50.0
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 1.9e-37 160.6 166 58.4
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 1.9e-37 160.6 245 47.8
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 1.7e-35 154.1 207 49.3
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 4.3e-34 149.4 111 69.4
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.8e-32 144.1 176 48.3
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 2.4e-32 143.7 214 45.8
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 2.4e-32 143.7 214 45.8
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 1.5e-31 141.0 215 44.7
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.5e-31 141.0 192 47.9
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.6e-31 140.2 192 47.9
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 4.5e-31 139.4 214 44.9
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 1.1e-29 134.8 210 45.2
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 5.5e-29 132.5 195 45.6
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 1.0e-22 111.7 176 46.0
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.1e-21 108.2 174 47.1
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 2.3e-19 100.5 80 62.5
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 1.6e-17 94.4 59 84.7
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 2.2e-14 84.0 63 68.3


User provided reference genes

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