Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.7e-85 319.3 159 100.0
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 8.3e-69 263.8 132 97.7
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 8.3e-69 263.8 132 97.7
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 8.3e-69 263.8 132 97.7
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 7.0e-68 260.8 132 96.2
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 7.0e-68 260.8 132 96.2
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 5.9e-67 257.7 132 93.9
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 7.7e-67 257.3 132 94.7
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.7e-66 256.1 132 93.9
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 6.5e-66 254.2 132 93.2
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 7.2e-65 250.8 131 91.6
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 2.1e-64 249.2 151 80.8
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 3.6e-64 248.4 132 89.4
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 3.6e-64 248.4 132 89.4
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 3.6e-64 248.4 132 89.4
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 3.6e-64 248.4 132 89.4
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 3.6e-64 248.4 132 89.4
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 3.6e-64 248.4 132 90.2
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 4.7e-64 248.1 151 80.8
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 4.7e-64 248.1 132 89.4
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 6.1e-64 247.7 132 89.4
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 8.0e-64 247.3 151 80.1
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.0e-63 246.9 132 88.6
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 1.4e-63 246.5 132 89.4
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 1.8e-63 246.1 132 89.4
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 1.8e-63 246.1 132 88.6
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 1.8e-63 246.1 132 88.6
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 1.8e-63 246.1 132 88.6
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 1.8e-63 246.1 132 88.6
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 4.0e-63 245.0 132 87.9
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 4.0e-63 245.0 132 87.9
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 5.2e-63 244.6 151 79.5
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 5.2e-63 244.6 132 87.9
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 5.2e-63 244.6 132 89.4
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 5.2e-63 244.6 132 90.2
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 5.2e-63 244.6 132 89.4
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 6.8e-63 244.2 151 79.5
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 6.8e-63 244.2 132 87.1
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 6.8e-63 244.2 132 87.9
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 8.8e-63 243.8 132 88.6
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 8.8e-63 243.8 132 88.6
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 8.8e-63 243.8 132 87.9
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 8.8e-63 243.8 132 87.9
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 1.2e-62 243.4 132 87.1
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 1.2e-62 243.4 132 87.9
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 1.2e-62 243.4 132 86.4
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 1.2e-62 243.4 132 86.4
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 1.2e-62 243.4 132 86.4
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 1.5e-62 243.0 132 87.9
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.5e-62 243.0 132 87.1
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.5e-62 243.0 132 87.1
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 1.5e-62 243.0 132 87.9
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.5e-62 243.0 132 87.1
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 2.0e-62 242.7 132 87.9
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 2.0e-62 242.7 132 87.9
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 2.0e-62 242.7 132 87.1
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 2.6e-62 242.3 132 85.6
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 2.6e-62 242.3 132 88.6
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 4.4e-62 241.5 132 86.4
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 4.4e-62 241.5 132 87.9
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 4.4e-62 241.5 132 87.1
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 5.7e-62 241.1 132 86.4
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 5.7e-62 241.1 132 86.4
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 5.7e-62 241.1 132 87.1
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 7.5e-62 240.7 131 88.5
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 9.8e-62 240.4 132 87.1
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 9.8e-62 240.4 132 84.8
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 9.8e-62 240.4 132 87.1
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 1.3e-61 240.0 132 87.1
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.3e-61 240.0 132 87.1
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.3e-61 240.0 132 87.1
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 1.3e-61 240.0 132 86.4
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 1.3e-61 240.0 132 85.6
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 1.3e-61 240.0 131 86.3
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 1.3e-61 240.0 151 77.5
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 1.3e-61 240.0 132 86.4
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 1.3e-61 240.0 132 86.4
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 1.3e-61 240.0 132 86.4
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 1.7e-61 239.6 132 84.8
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 2.2e-61 239.2 132 87.9
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 2.8e-61 238.8 132 87.9
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 2.8e-61 238.8 132 86.4
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 2.8e-61 238.8 132 85.6
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 3.7e-61 238.4 132 84.1
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 4.9e-61 238.0 132 86.4
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 4.9e-61 238.0 132 87.1
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 4.9e-61 238.0 132 87.1
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 4.9e-61 238.0 132 87.1
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 6.3e-61 237.7 132 87.1
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 6.3e-61 237.7 132 87.1
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 1.4e-60 236.5 132 84.8
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 1.4e-60 236.5 132 84.1
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 1.4e-60 236.5 132 86.4
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 2.4e-60 235.7 132 85.6
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 2.4e-60 235.7 132 86.4
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 3.1e-60 235.3 132 82.6
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 3.1e-60 235.3 132 82.6
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 3.1e-60 235.3 132 83.3
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 4.1e-60 235.0 132 86.4
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 5.4e-60 234.6 132 84.8
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 7.0e-60 234.2 132 84.8
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 7.0e-60 234.2 132 85.6
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 1.6e-59 233.0 132 83.3
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 2.0e-59 232.6 132 84.1
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 4.5e-59 231.5 132 84.1
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 5.9e-59 231.1 132 83.3
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 1.0e-58 230.3 132 84.1
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 8.6e-58 227.3 132 80.3
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 4.2e-57 224.9 132 81.1
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.6e-56 223.0 132 83.3
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.6e-56 223.0 132 83.3
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.4e-55 219.9 132 77.3
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.8e-55 219.5 132 76.5
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 5.2e-55 218.0 117 88.0
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 2.2e-53 212.6 151 69.5
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 1.1e-52 210.3 132 75.0
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 4.1e-52 208.4 151 67.5
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 5.9e-51 204.5 132 77.3
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 5.0e-50 201.4 137 73.0
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 1.1e-49 200.3 132 73.5
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 1.5e-49 199.9 138 71.0
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 2.4e-44 182.6 132 70.5
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 2.3e-39 166.0 109 78.0
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 9.9e-30 134.0 101 64.4
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 1.3e-29 133.7 132 50.0
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 3.5e-27 125.6 132 48.5
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 5.2e-23 111.7 133 42.1
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 1.5e-22 110.2 90 64.4
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.6e-19 100.1 135 43.7
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.7e-10 70.1 40 85.0
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.5e-09 67.0 36 88.9
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.6e-08 63.5 34 88.2


User provided reference genes

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