Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 4315.8 2182 100.0
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 4124.3 2183 95.6
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 3868.9 2197 89.3
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 3602.8 1879 96.0
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 3311.9 2228 76.3
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 3304.6 2225 75.9
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2968.3 2215 68.8
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2945.6 2215 68.4
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2940.2 2222 68.1
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2919.4 2223 67.3
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2879.0 2233 67.1
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2860.9 2228 66.3
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2845.1 1830 79.0
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2798.1 2237 64.4
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2796.9 2228 64.9
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2753.8 2225 64.1
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2751.5 2228 64.2
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2751.1 2233 64.4
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2746.8 2228 64.0
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2740.7 2229 63.9
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2733.7 2237 63.3
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2728.7 2232 64.3
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2698.3 2219 63.6
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2696.4 2216 63.2
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2680.2 2249 62.8
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2672.1 2235 62.4
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2666.0 2225 63.0
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2662.9 2235 62.2
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2662.5 2233 62.7
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2652.1 2218 62.8
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2633.6 2209 62.7
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2609.7 2231 61.5
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2603.9 2230 61.4
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2561.9 2209 61.2
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2559.3 2240 60.3
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2555.8 2225 60.5
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2553.1 2237 60.5
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2551.5 2234 61.3
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2549.2 2235 60.1
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2548.9 2232 59.7
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2544.2 2225 60.1
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2538.5 2237 59.9
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2536.1 2235 59.5
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2531.9 2229 59.8
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2531.5 2214 60.1
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2531.5 2216 60.2
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2531.1 2220 60.3
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2522.7 2223 60.0
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2511.5 2228 59.6
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2505.7 2222 58.8
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2500.7 2236 59.3
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2486.1 2230 58.9
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2481.8 2260 57.7
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2476.8 2215 57.8
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2473.0 2258 59.3
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2472.2 2224 58.2
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2466.8 2206 59.4
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2465.3 2216 57.9
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2460.3 2219 57.7
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2443.3 2232 58.4
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2436.4 2218 57.3
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2431.0 2234 57.3
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2427.1 2217 58.7
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2403.2 2198 58.9
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2394.8 2202 58.7
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2392.1 2197 58.9
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2391.3 2224 58.0
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2389.8 2197 58.5
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2389.8 2231 56.4
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2387.1 1828 66.7
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2384.8 2201 58.3
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2384.8 2201 58.3
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2382.8 2198 58.4
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2370.1 2200 58.2
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2370.1 2200 58.2
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2370.1 2200 58.4
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2369.7 2224 57.6
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2364.7 2203 57.2
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2344.3 2235 55.6
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2328.1 1826 65.2
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2262.3 2312 53.8
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2254.2 2201 56.2
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2229.1 2223 55.2
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2220.7 2026 59.0
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2191.8 1709 65.9
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2094.3 2324 50.1
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2083.1 2235 51.8
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2034.2 2217 51.7
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1973.0 2193 51.3
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1810.0 1424 66.9
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1747.6 2406 43.6
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1565.8 1704 51.6
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1518.8 1370 59.4
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1436.4 2354 39.0
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1377.5 2349 38.0
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1325.5 1101 62.4
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1318.5 1203 59.8
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1315.1 2163 39.1
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1307.4 2247 37.7
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1288.1 1013 65.4
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1181.4 936 64.9
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1156.4 1059 56.8
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 1083.2 1426 45.4
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 4.3e-269 932.9 1007 53.1
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 4.1e-267 926.4 779 63.8
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 5.5e-264 916.0 2444 30.4
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 5.5e-240 836.3 866 52.5
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 7.5e-221 772.7 1328 38.6
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 4.3e-216 756.9 709 57.3
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 9.3e-179 632.9 1003 41.6
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 1.5e-149 535.8 446 59.2
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 5.3e-142 510.8 2356 25.0
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 1.9e-99 369.4 371 56.1
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 7.1e-78 297.7 286 59.8
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 8.7e-76 290.8 322 50.0
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 5.1e-68 265.0 301 46.8
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 4.5e-64 251.9 307 46.6
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 9.9e-64 250.8 759 28.3
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 1.1e-57 230.7 229 51.5
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 2.9e-55 222.6 229 51.1
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 3.2e-54 219.2 178 67.4
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 2.0e-48 199.9 260 44.2
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 1.5e-43 183.7 140 69.3
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 7.9e-37 161.4 115 73.9
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.0e-35 156.8 219 43.4
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 4.7e-29 135.6 252 35.7
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 6.1e-29 135.2 166 41.6
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 1.8e-28 133.7 103 60.2
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 8.8e-28 131.3 128 51.6
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 2.0e-27 130.2 97 64.9
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 1.8e-25 123.6 106 64.2
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 4.2e-14 85.9 103 42.7
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 1.7e-10 73.9 454 21.1


User provided reference genes

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