Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0548 Fragaria x ananassa HOM05D006342 ORTHO05D008155 1.2e-231 806.2 413 100.0
FvH4_6g33511 Fragaria vesca HOM05D006342 ORTHO05D008155 5.8e-199 697.6 422 87.2
RcHm_v2.0_Chr2g0143381 Rosa chinensis HOM05D006342 ORTHO05D008155 2.8e-177 625.5 417 79.4
FAN09G1871 Fragaria x ananassa HOM05D006342 ORTHO05D003187 7.2e-157 557.8 416 74.0
Prupe.8G064500 Prunus persica HOM05D006342 ORTHO05D008155 8.2e-153 544.3 420 70.0
MD10G1052500 Malus domestica HOM05D006342 ORTHO05D008155 6.3e-137 491.5 413 65.4
QL11p022820 Quercus lobata HOM05D006342 ORTHO05D008155 2.0e-135 486.5 417 62.6
CANSAT21G1086 Cannabis sativa HOM05D006342 ORTHO05D008155 9.8e-130 467.6 417 61.4
Nn5g30026 Nelumbo nucifera HOM05D006342 ORTHO05D008155 4.9e-129 465.3 319 72.7
Ciclev10028615m.g Citrus clementina HOM05D006342 ORTHO05D008155 2.4e-128 463.0 368 66.3
FAN14G1047 Fragaria x ananassa HOM05D000343 ORTHO05D003187 9.2e-128 461.1 380 69.2
Lalb_Chr05g0217591 Lupinus albus HOM05D006342 ORTHO05D008155 1.6e-127 460.3 413 59.1
Atru.chr6.1184 Acer truncatum HOM05D006342 ORTHO05D008155 7.7e-127 458.0 407 61.2
TAR628G1271 Trochodendron aralioides HOM05D006342 ORTHO05D008155 1.7e-126 456.8 315 73.7
Potri.017G050900 Populus trichocarpa HOM05D006342 ORTHO05D008155 1.5e-125 453.8 408 60.3
CSS0025541 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 2.5e-125 453.0 342 69.3
PSO447G0017 Papaver somniferum HOM05D006342 ORTHO05D008155 3.3e-125 452.6 365 65.2
Dinv24174 Davidia involucrata HOM05D006342 ORTHO05D008155 4.3e-125 452.2 330 70.3
Sabra17G0037300 Salix brachista HOM05D006342 ORTHO05D008155 7.3e-125 451.4 355 65.9
Lj4g0023834 Lotus japonicus HOM05D006342 ORTHO05D008155 9.5e-125 451.1 313 71.6
Manes.07G034700 Manihot esculenta HOM05D006342 ORTHO05D008155 1.6e-124 450.3 348 67.2
Thecc.02G134500 Theobroma cacao HOM05D006342 ORTHO05D008155 4.7e-124 448.7 357 65.8
Eucgr.G00932 Eucalyptus grandis HOM05D006342 ORTHO05D008155 6.8e-123 444.9 413 58.1
Hma1.2p1_0522F.1_g171800 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 8.9e-123 444.5 308 72.4
TWI23G0792 Tripterygium wilfordii HOM05D006342 ORTHO05D008155 2.0e-122 443.4 414 59.9
Actinidia24004 Actinidia chinensis HOM05D006342 ORTHO05D008155 2.6e-122 443.0 403 61.0
ECA234G3624 Erigeron canadensis HOM05D006342 ORTHO05D008155 2.6e-122 443.0 322 69.9
Rhsim11G0137800 Rhododendron simsii HOM05D006342 ORTHO05D008155 2.6e-122 443.0 435 57.9
RhsimUnG0187900 Rhododendron simsii HOM05D006342 ORTHO05D008155 5.7e-122 441.8 435 57.9
Gorai.005G222500 Gossypium raimondii HOM05D006342 ORTHO05D008155 7.5e-122 441.4 354 64.1
CsaV3_7G006740 Cucumis sativus L. HOM05D006342 ORTHO05D008155 9.8e-122 441.0 320 69.1
GSVIVG01015772001 Vitis vinifera HOM05D006342 ORTHO05D008155 1.3e-121 440.7 307 72.6
MELO3C018621.2 Cucumis melo HOM05D006342 ORTHO05D008155 1.7e-121 440.3 412 59.2
Psat7g100320 Pisum sativum HOM05D006342 ORTHO05D008155 2.2e-121 439.9 348 65.2
Glyma.08G070600 Glycine max HOM05D006342 ORTHO05D008155 3.7e-121 439.1 327 69.1
Peaxi162Scf01060g00128 Petunia axillaris HOM05D006342 ORTHO05D008155 3.7e-121 439.1 319 70.2
Nitab4.5_0003959g0010 Nicotiana tabacum HOM05D006342 ORTHO05D008155 8.3e-121 438.0 349 66.2
CiPaw.05G033400 Carya illinoinensis HOM05D006342 ORTHO05D008155 1.8e-120 436.8 416 57.9
Gohir.A03G175100 Gossypium hirsutum HOM05D006342 ORTHO05D008155 4.1e-120 435.6 380 60.8
Gohir.D02G198600 Gossypium hirsutum HOM05D006342 ORTHO05D008155 5.4e-120 435.3 354 63.0
Medtr4g094100 Medicago truncatula HOM05D006342 ORTHO05D008155 7.0e-120 434.9 319 68.0
Nitab4.5_0000863g0140 Nicotiana tabacum HOM05D006342 ORTHO05D008155 7.0e-120 434.9 340 66.8
DCAR_003711 Daucus carota HOM05D006342 ORTHO05D008155 1.2e-119 434.1 383 60.8
Duzib052G0010 Durio zibethinus HOM05D006342 ORTHO05D008155 1.2e-119 434.1 384 60.4
VMungo0251G1514 Vigna mungo HOM05D006342 ORTHO05D008155 1.2e-119 434.1 374 60.4
arahy.Tifrunner.gnm1.ann1.U7PRNJ Arachis hypogaea HOM05D006342 ORTHO05D008155 4.6e-119 432.2 340 65.6
Glyma.13G042800 Glycine max HOM05D006342 ORTHO05D008155 4.6e-119 432.2 367 62.4
PGR042G1699 Punica granatum HOM05D006342 ORTHO05D008155 5.9e-119 431.8 319 68.7
Sabra17G0042600 Salix brachista HOM05D006342 ORTHO05D008155 7.8e-119 431.4 417 58.3
TPR.G35344 Trifolium pratense HOM05D006342 ORTHO05D008155 3.0e-118 429.5 303 70.0
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 1.1e-117 427.6 303 70.3
CAN.G523.45 Capsicum annuum HOM05D006342 ORTHO05D008155 1.5e-117 427.2 319 68.3
Sopen01g047960 Solanum pennellii HOM05D006342 ORTHO05D008155 7.3e-117 424.9 319 69.0
Oeu042410.2 Olea europaea HOM05D006342 ORTHO05D008155 1.2e-116 424.1 322 66.8
MSTRG.16600 Avicennia marina HOM05D006342 ORTHO05D008155 2.8e-116 422.9 411 56.9
Lsat_1_v5_gn_5_108680 Lactuca sativa HOM05D006342 ORTHO05D008155 4.7e-116 422.2 330 65.8
HanXRQChr10g0303621 Helianthus annuus HOM05D006342 ORTHO05D008155 6.2e-116 421.8 313 67.7
Lj9A350G66 Lonicera japonica HOM05D006342 ORTHO05D008155 1.0e-115 421.0 349 64.2
Cc02_g21250 Coffea canephora HOM05D006342 ORTHO05D008155 3.1e-115 419.5 317 67.5
PGSC0003DMG400012575 Solanum tuberosum HOM05D006342 ORTHO05D008155 5.2e-115 418.7 319 68.0
AL2G16000 Arabidopsis lyrata HOM05D006342 ORTHO05D008155 1.7e-113 413.7 340 62.6
Thhalv10023528m.g Eutrema salsugineum HOM05D006342 ORTHO05D008155 1.7e-113 413.7 305 67.5
Carub.0002s0473 Capsella rubella HOM05D006342 ORTHO05D008155 3.7e-113 412.5 305 67.9
Sabra17G0037900 Salix brachista HOM05D006342 ORTHO05D008155 4.9e-113 412.1 355 63.1
EL10Ac9g21517 Beta vulgaris HOM05D006342 ORTHO05D008155 1.4e-112 410.6 326 64.1
AUR62010160 Chenopodium quinoa HOM05D006342 ORTHO05D008155 1.4e-112 410.6 328 65.2
AT1G60600 Arabidopsis thaliana HOM05D006342 ORTHO05D008155 3.2e-112 409.5 305 67.2
AUR62013159 Chenopodium quinoa HOM05D006342 ORTHO05D008155 4.1e-112 409.1 310 66.1
A01p29370 Brassica napus HOM05D006342 ORTHO05D008155 5.4e-112 408.7 306 68.0
BraA01t03071Z Brassica rapa HOM05D006342 ORTHO05D008155 1.2e-111 407.5 306 67.0
BolC1t03681H Brassica oleracea HOM05D006342 ORTHO05D008155 2.0e-111 406.8 306 67.3
Migut.B00584 Erythranthe guttata HOM05D006342 ORTHO05D008155 2.7e-111 406.4 348 61.5
BcaB04g20275 Brassica carinata HOM05D006342 ORTHO05D008155 1.7e-110 403.7 305 66.6
ClCG09G015650 Citrullus lanatus HOM05D006342 ORTHO05D008155 2.3e-110 403.3 321 65.1
BcaC09g49390 Brassica carinata HOM05D006342 ORTHO05D008155 3.0e-110 402.9 306 67.0
C01p37160 Brassica napus HOM05D006342 ORTHO05D008155 3.0e-110 402.9 306 67.0
Aa31LG2G9860 Aethionema arabicum HOM05D006342 ORTHO05D008155 6.6e-110 401.7 326 65.0
MBI05_g05612_MAGBIO Magnolia biondii HOM05D006342 ORTHO05D008155 1.9e-109 400.2 297 68.7
SalBow5G5605 Salvia bowleyana HOM05D006342 ORTHO05D008155 4.3e-109 399.1 422 53.1
arahy.Tifrunner.gnm1.ann1.XZGJ82 Arachis hypogaea HOM05D006342 ORTHO05D008155 5.6e-109 398.7 366 60.4
Cpa.g.sc42.26 Carica papaya HOM05D006342 ORTHO05D008155 2.1e-108 396.7 279 71.7
Sc15g0003050 Simmondsia chinensis HOM05D006342 ORTHO05D008155 2.8e-108 396.4 314 65.6
SGA_v2.0_scaffold83G26327 Striga asiatica HOM05D006342 ORTHO05D008155 6.2e-108 395.2 304 66.1
COL.COLO4_32304 Corchorus olitorius HOM05D006342 ORTHO05D008155 1.4e-107 394.0 279 70.6
THA.LOC104799883 Tarenaya hassleriana HOM05D006342 ORTHO05D008155 1.7e-105 387.1 282 69.1
unitig_0.g609 Utricularia gibba HOM05D006342 ORTHO05D008190 2.4e-104 383.3 323 61.3
Os03g0190100 Oryza sativa ssp. japonica HOM05D006342 ORTHO05D008155 9.2e-104 381.3 304 64.5
Solyc01g105460.4 Solanum lycopersicum HOM05D006342 ORTHO05D008155 1.3e-102 377.5 275 71.6
Migut.B01155 Erythranthe guttata HOM05D006342 ORTHO05D008155 3.3e-101 372.9 330 57.3
MSTRG.20291 Avicennia marina HOM05D006342 ORTHO05D008155 3.6e-100 369.4 348 55.5
Mapoly0112s0045 Marchantia polymorpha HOM05D006342 ORTHO05D008155 3.4e-98 362.8 312 59.6
vmacro01839 Vaccinium macrocarpon HOM05D006342 ORTHO05D008155 3.2e-96 356.3 459 46.6
PSO210G1371 Papaver somniferum HOM05D006342 ORTHO05D008155 4.1e-96 355.9 249 72.3
Hund06370 Selenicereus undatus HOM05D006342 ORTHO05D008155 7.1e-96 355.1 341 56.9
Pp3c15_22700 Physcomitrium patens HOM05D006342 ORTHO05D008155 2.7e-95 353.2 311 58.2
HPP92_019303 Vanilla planifolia HOM05D006342 ORTHO05D008155 3.3e-93 346.3 351 54.7
Zm00001eb006830 Zea mays HOM05D006342 ORTHO05D008155 5.8e-90 335.5 306 59.2
Migut.B01157 Erythranthe guttata HOM05D006342 ORTHO05D008155 3.2e-88 329.7 311 54.7
Phvul.002G210750 Phaseolus vulgaris HOM05D006342 ORTHO05D008155 1.2e-87 327.8 217 75.1
SMO364G0259 Selaginella moellendorffii HOM05D006342 ORTHO05D008155 3.5e-87 326.2 285 60.0
Oeu000253.3 Olea europaea HOM05D006342 ORTHO05D008155 5.1e-86 322.4 310 56.1
Sed0004067 Sechium edule HOM05D006342 ORTHO05D008155 1.3e-84 317.8 222 71.6
QL11p022738 Quercus lobata HOM05D006342 ORTHO05D008155 2.7e-79 300.1 229 70.3
Hma1.2p1_0522F.1_g171810 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 3.6e-76 289.7 199 71.4
SpUN0430_0010 Schrenkiella parvula HOM05D006342 ORTHO05D008155 8.1e-76 288.5 227 63.9
Ah.01g010100 Amaranthus hybridus HOM05D006342 ORTHO05D008155 2.3e-70 270.4 213 63.8
AagrBONN_evm.TU.Sc2ySwM_228.424 Anthoceros agrestis HOM05D006342 ORTHO05D008155 2.8e-68 263.5 334 47.0
Haze_10585 Corylus avellana HOM05D006342 ORTHO05D008155 3.7e-68 263.1 293 51.5
AagrBONN_evm.TU.Sc2ySwM_117.3744 Anthoceros agrestis HOM05D006342 ORTHO05D008155 2.2e-65 253.8 322 46.6
CBR_g45392 Chara braunii HOM05D006342 ORTHO05D008155 1.9e-64 250.8 277 47.7
SEGI_15165 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 3.7e-60 236.5 174 65.5
PRCOL_00002739 Prasinoderma coloniale HOM05D006342 ORTHO05D008155 3.8e-57 226.5 303 44.9
Cre04.g219787 Chlamydomonas reinhardtii HOM05D006342 ORTHO05D008155 2.2e-49 200.7 380 37.4
ATR0918G004 Amborella trichopoda HOM05D006342 ORTHO05D008155 6.7e-46 189.1 277 42.6
Aqoxy5G01924 Aquilegia oxysepala HOM05D006342 ORTHO05D008155 1.7e-41 174.5 130 63.8
Glyma.10G123801 Glycine max HOM05D006342 ORTHO05D008155 3.3e-29 133.7 103 63.1
Glyma.16G064700 Glycine max HOM05D006342 ORTHO05D008155 3.3e-29 133.7 103 63.1
ATR0782G112 Amborella trichopoda HOM05D006342 ORTHO05D008155 1.7e-25 121.3 94 60.6
SEGI_15059 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 6.5e-25 119.4 107 58.9
arahy.Tifrunner.gnm1.ann1.6J847D Arachis hypogaea HOM05D006342 ORTHO05D008155 1.2e-23 115.2 102 57.8
arahy.Tifrunner.gnm1.ann1.RT43SE Arachis hypogaea HOM05D006342 ORTHO05D008155 1.2e-23 115.2 102 57.8
arahy.Tifrunner.gnm1.ann1.2FS2S8 Arachis hypogaea HOM05D006342 ORTHO05D008155 1.0e-22 112.1 102 55.9
CARHR052370 Cardamine hirsuta HOM05D006342 ORTHO05D008155 2.4e-19 100.9 90 53.3
CSS0034348 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 2.3e-14 84.3 94 52.1
TAR376G0398 Trochodendron aralioides HOM05D000064 ORTHO05D001307 1.2e-13 82.0 56 67.9
arahy.Tifrunner.gnm1.ann1.P2KY5D Arachis hypogaea HOM05D006342 ORTHO05D008155 5.9e-10 69.7 58 56.9
Eucgr.G00935 Eucalyptus grandis HOM05D006342 ORTHO05D008155 2.3e-06 57.8 123 38.2


User provided reference genes

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