Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 8.4e-157 557.0 282 100.0
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 8.4e-157 557.0 282 100.0
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 3.2e-156 555.1 282 99.6
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.1e-155 552.4 282 98.9
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 7.1e-148 527.3 282 95.7
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 7.3e-145 517.3 287 90.9
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 6.7e-138 494.2 287 86.8
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 2.1e-131 472.6 267 86.9
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 6.0e-131 471.1 279 86.0
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 1.9e-129 466.1 288 83.3
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 5.7e-129 464.5 287 82.9
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 1.3e-128 463.4 273 84.6
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 1.8e-127 459.5 269 83.6
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 1.8e-127 459.5 288 83.0
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 4.0e-127 458.4 277 82.3
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 6.9e-127 457.6 257 86.0
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 1.2e-126 456.8 287 81.2
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 2.6e-126 455.7 287 81.2
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 4.5e-126 454.9 283 81.6
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 4.5e-126 454.9 284 82.0
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 5.8e-126 454.5 269 83.3
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 1.0e-125 453.8 281 82.9
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 1.7e-125 453.0 288 80.9
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 5.0e-125 451.4 256 85.2
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 5.5e-124 448.0 278 80.9
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 1.6e-123 446.4 276 79.3
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 4.6e-123 444.9 277 80.9
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.0e-122 443.7 244 86.9
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 2.3e-122 442.6 255 85.5
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 2.3e-122 442.6 273 80.2
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 3.9e-122 441.8 240 87.1
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 5.1e-122 441.4 274 79.9
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 6.7e-122 441.0 250 86.4
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 6.7e-122 441.0 264 81.8
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 8.7e-122 440.7 272 80.9
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 1.5e-121 439.9 239 87.0
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.5e-121 439.9 257 83.3
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 2.5e-121 439.1 273 80.6
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 3.3e-121 438.7 268 82.1
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 5.7e-121 438.0 282 77.0
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 7.4e-121 437.6 277 77.6
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 9.7e-121 437.2 239 87.4
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 1.3e-120 436.8 275 79.3
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 2.8e-120 435.6 273 79.9
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 3.7e-120 435.3 275 78.2
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 4.8e-120 434.9 284 76.4
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 4.8e-120 434.9 256 82.0
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 6.3e-120 434.5 284 77.1
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 1.1e-119 433.7 244 84.4
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 1.4e-119 433.3 256 83.6
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 1.4e-119 433.3 251 84.1
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 2.4e-119 432.6 264 81.1
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 5.3e-119 431.4 270 80.0
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 5.3e-119 431.4 270 80.0
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 6.9e-119 431.0 281 77.9
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 1.5e-118 429.9 240 85.0
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 3.4e-118 428.7 268 80.2
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 3.4e-118 428.7 268 80.2
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 5.9e-118 427.9 259 80.3
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 5.0e-117 424.9 236 84.3
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 6.5e-117 424.5 272 77.6
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 1.9e-116 422.9 277 76.9
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 2.5e-116 422.5 253 80.2
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 2.5e-116 422.5 225 90.7
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.5e-116 422.5 240 84.6
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 4.2e-116 421.8 274 76.6
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 4.2e-116 421.8 241 85.1
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 4.2e-116 421.8 274 76.6
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 4.2e-116 421.8 274 76.6
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 9.4e-116 420.6 273 76.6
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 2.1e-115 419.5 241 83.0
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 2.7e-115 419.1 284 74.6
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 3.6e-115 418.7 240 84.2
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 3.6e-115 418.7 265 78.9
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 3.0e-114 415.6 244 80.7
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 3.9e-114 415.2 282 74.5
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 2.0e-113 412.9 250 79.6
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 2.5e-113 412.5 240 82.9
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 3.3e-113 412.1 245 80.4
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 5.7e-113 411.4 286 73.4
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 7.4e-113 411.0 285 73.7
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 9.7e-113 410.6 240 81.2
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 9.7e-113 410.6 396 58.6
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 2.2e-112 409.5 288 74.0
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.8e-112 409.1 280 74.6
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 4.8e-112 408.3 238 80.3
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 8.2e-112 407.5 301 72.8
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 1.4e-111 406.8 249 78.7
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 1.4e-111 406.8 272 75.0
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 5.3e-111 404.8 282 73.4
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 6.9e-111 404.4 259 74.5
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 1.2e-110 403.7 271 74.2
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.5e-110 403.3 259 74.5
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.6e-110 402.5 272 74.6
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 5.9e-110 401.4 243 77.8
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 7.7e-110 401.0 270 73.0
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 1.0e-109 400.6 248 78.2
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 2.9e-109 399.1 241 80.1
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 5.0e-109 398.3 288 69.4
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 1.9e-108 396.4 274 72.6
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 2.1e-107 392.9 250 76.4
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 2.3e-106 389.4 252 75.4
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 3.0e-106 389.0 242 77.7
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 5.7e-105 384.8 235 78.7
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 5.3e-103 378.3 225 80.9
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 7.0e-103 377.9 224 80.8
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 2.6e-97 359.4 249 70.3
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 4.5e-94 348.6 245 71.8
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 2.9e-93 345.9 222 74.8
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 1.1e-92 344.0 270 63.3
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 1.1e-92 344.0 255 67.8
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 2.1e-91 339.7 191 85.3
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 3.0e-90 335.9 275 61.8
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 1.3e-88 330.5 234 68.4
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.4e-87 327.0 243 65.0
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 4.5e-86 322.0 177 87.6
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 4.7e-83 312.0 226 70.4
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 1.4e-82 310.5 238 63.0
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 1.2e-81 307.4 283 57.6
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 9.8e-81 304.3 189 78.8
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 2.4e-79 299.7 235 61.3
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 8.6e-77 291.2 215 66.5
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 1.9e-76 290.0 240 61.2
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 3.7e-72 275.8 276 53.3
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 4.3e-68 262.3 295 51.2
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 5.6e-68 261.9 230 57.8
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 2.4e-63 246.5 168 74.4
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 8.1e-59 231.5 259 49.8
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 5.2e-58 228.8 127 89.0
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.2e-57 227.6 222 53.6
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 2.9e-56 223.0 134 81.3
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 3.1e-50 203.0 229 43.7
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 4.1e-47 192.6 126 76.2
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 5.1e-45 185.7 108 79.6
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 2.8e-43 179.9 220 41.8
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 2.8e-43 179.9 219 42.9
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.2e-40 170.2 115 73.9
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 7.3e-36 155.2 85 87.1
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.1e-35 153.7 147 55.8
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 2.1e-35 153.7 120 64.2
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 9.9e-33 144.8 116 71.6
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 3.8e-32 142.9 86 74.4
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 9.9e-25 118.2 254 31.5
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 1.9e-23 114.0 81 69.1
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.0e-21 108.2 68 73.5
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.8e-19 100.1 47 97.9
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 3.1e-18 96.7 182 39.0
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 2.5e-15 87.0 86 53.5
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 5.1e-13 79.3 71 54.9
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 1.6e-11 74.3 69 55.1
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 6.9e-10 68.9 232 27.2
VMungo1080G0925 Vigna mungo HOM05D003774 ORTHO05D009174 4.5e-09 66.2 252 27.0
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 1.0e-08 65.1 241 25.7
A09p31810 Brassica napus HOM05D003774 ORTHO05D009174 1.7e-08 64.3 229 24.5
BraA09t38720Z Brassica rapa HOM05D003774 ORTHO05D009174 1.7e-08 64.3 227 24.2
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.9e-08 63.5 211 28.0
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 2.9e-08 63.5 250 25.2
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 3.8e-08 63.2 243 27.6
Ciclev10001943m.g Citrus clementina HOM05D003774 ORTHO05D009174 6.5e-08 62.4 236 26.3
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 6.5e-08 62.4 243 26.7
C06p11130 Brassica napus HOM05D003774 ORTHO05D009174 8.4e-08 62.0 229 24.9
COL.COLO4_24651 Corchorus olitorius HOM05D003774 ORTHO05D009174 8.4e-08 62.0 231 26.0
BcaC08g43731 Brassica carinata HOM05D003774 ORTHO05D009174 1.1e-07 61.6 229 24.9
BolC6t36236H Brassica oleracea HOM05D003774 ORTHO05D009174 1.1e-07 61.6 229 24.9
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 1.4e-07 61.2 243 26.7
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 1.4e-07 61.2 243 26.7
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.4e-07 61.2 193 28.0
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.9e-07 60.8 28 96.4
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 3.2e-07 60.1 233 27.9
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 4.2e-07 59.7 229 25.3
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 7.2e-07 58.9 244 26.2
MBI09_g10676_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D009174 9.3e-07 58.5 223 25.6
Rhsim11G0052900 Rhododendron simsii HOM05D003774 ORTHO05D009174 9.3e-07 58.5 225 27.6
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 1.6e-06 57.8 235 27.7
Eucgr.F02990 Eucalyptus grandis HOM05D003774 ORTHO05D009174 1.6e-06 57.8 249 26.9
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 1.6e-06 57.8 202 27.2
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 2.1e-06 57.4 202 25.2
Zm00001eb348780 Zea mays HOM05D003774 ORTHO05D009174 2.1e-06 57.4 248 26.6
Ciclev10030258m.g Citrus clementina HOM05D004677 ORTHO05D005746 3.5e-06 56.6 37 70.3
Mapoly0091s0038 Marchantia polymorpha HOM05D001214 ORTHO05D001029 4.6e-06 56.2 201 28.9
Prupe.1G555600 Prunus persica HOM05D003774 ORTHO05D009174 4.6e-06 56.2 243 27.6
TAR624G0812 Trochodendron aralioides HOM05D003774 ORTHO05D009174 4.6e-06 56.2 228 26.3
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 6.1e-06 55.8 236 25.8


User provided reference genes

Program Settings