Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0419 Fragaria x ananassa HOM05D003390 ORTHO05D004189 1.4e-99 366.3 186 100.0
FAN09G2932 Fragaria x ananassa HOM05D003390 ORTHO05D004189 4.6e-71 271.6 148 93.9
RcHm_v2.0_Chr2g0151651 Rosa chinensis HOM05D003390 ORTHO05D004189 3.2e-64 248.8 168 78.6
Prupe.3G173900 Prunus persica HOM05D003390 ORTHO05D004189 7.2e-56 221.1 167 71.3
Eucgr.A01981 Eucalyptus grandis HOM05D003390 ORTHO05D004189 2.6e-53 212.6 167 68.9
TAR386G0005 Trochodendron aralioides HOM05D003390 ORTHO05D004189 7.4e-53 211.1 174 66.7
TAR627G0573 Trochodendron aralioides HOM05D003390 ORTHO05D004189 7.4e-53 211.1 174 66.7
Haze_13511 Corylus avellana HOM05D003390 ORTHO05D004189 6.3e-52 208.0 170 64.7
CiPaw.09G127400 Carya illinoinensis HOM05D003390 ORTHO05D004189 4.1e-51 205.3 164 67.1
SalBow8G0013 Salvia bowleyana HOM05D003390 ORTHO05D002303 4.1e-51 205.3 163 66.9
QL08p044424 Quercus lobata HOM05D003390 ORTHO05D004189 1.2e-50 203.8 169 65.7
GSVIVG01021390001 Vitis vinifera HOM05D003390 ORTHO05D004189 1.2e-50 203.8 166 65.7
MD05G1290900 Malus domestica HOM05D003390 ORTHO05D004189 1.5e-50 203.4 163 65.0
Aqoxy1G01824 Aquilegia oxysepala HOM05D003390 ORTHO05D004189 2.0e-50 203.0 169 65.1
MD10G1266700 Malus domestica HOM05D003390 ORTHO05D004189 2.6e-50 202.6 163 65.0
MD16G1203400 Malus domestica HOM05D003390 ORTHO05D004189 2.6e-50 202.6 163 65.0
Oeu001052.1 Olea europaea HOM05D003390 ORTHO05D004189 2.6e-50 202.6 163 66.9
PGR042G1945 Punica granatum HOM05D003390 ORTHO05D004189 2.6e-50 202.6 144 73.6
arahy.Tifrunner.gnm1.ann1.QBP2NG Arachis hypogaea HOM05D003390 ORTHO05D004189 3.5e-50 202.2 144 71.5
Cpa.g.sc17.128 Carica papaya HOM05D003390 ORTHO05D004189 7.7e-50 201.1 163 66.3
Dinv30696 Davidia involucrata HOM05D003390 ORTHO05D004189 1.0e-49 200.7 162 64.8
Manes.17G065600 Manihot esculenta HOM05D003390 ORTHO05D004189 1.0e-49 200.7 144 70.1
Rhsim06G0115300 Rhododendron simsii HOM05D003390 ORTHO05D004189 1.0e-49 200.7 173 60.1
arahy.Tifrunner.gnm1.ann1.WT2YK3 Arachis hypogaea HOM05D003390 ORTHO05D004189 1.3e-49 200.3 144 70.8
Cc09_g09610 Coffea canephora HOM05D003390 ORTHO05D004189 1.3e-49 200.3 163 65.6
Ciclev10014753m.g Citrus clementina HOM05D003390 ORTHO05D004189 1.7e-49 199.9 172 61.6
Lj1A1183G65 Lonicera japonica HOM05D003390 ORTHO05D004189 1.7e-49 199.9 163 64.4
Nitab4.5_0000206g0100 Nicotiana tabacum HOM05D003390 ORTHO05D004189 1.7e-49 199.9 163 65.6
Nitab4.5_0001826g0010 Nicotiana tabacum HOM05D003390 ORTHO05D004189 1.7e-49 199.9 163 65.6
VMungo0540G2227 Vigna mungo HOM05D003390 ORTHO05D004189 1.7e-49 199.9 167 64.1
Migut.M00950 Erythranthe guttata HOM05D003390 ORTHO05D004189 2.2e-49 199.5 163 65.0
TWI09G1133 Tripterygium wilfordii HOM05D003390 ORTHO05D004189 2.2e-49 199.5 144 72.2
Eucgr.D00339 Eucalyptus grandis HOM05D003390 ORTHO05D004189 2.9e-49 199.1 163 62.0
FAN25G2602 Fragaria x ananassa HOM05D003390 ORTHO05D004189 2.9e-49 199.1 166 64.5
Sabra16G0232300 Salix brachista HOM05D003390 ORTHO05D004189 2.9e-49 199.1 164 63.4
AUR62027570 Chenopodium quinoa HOM05D003390 ORTHO05D004189 3.8e-49 198.7 165 63.0
RcHm_v2.0_Chr5g0013021 Rosa chinensis HOM05D003390 ORTHO05D004189 3.8e-49 198.7 163 64.4
Aa31LG6G5840 Aethionema arabicum HOM05D003390 ORTHO05D004189 5.0e-49 198.4 161 65.2
Cfa000990 Carpinus fangiana HOM05D003390 ORTHO05D004189 5.0e-49 198.4 164 65.9
FvH4_3g06290 Fragaria vesca HOM05D003390 ORTHO05D004189 5.0e-49 198.4 166 63.9
FAN11G2053 Fragaria x ananassa HOM05D003390 ORTHO05D004189 5.0e-49 198.4 166 63.9
Thecc.01G163000 Theobroma cacao HOM05D003390 ORTHO05D004189 5.0e-49 198.4 144 71.5
Atru.chr6.2080 Acer truncatum HOM05D003390 ORTHO05D004189 6.5e-49 198.0 169 62.7
CARHR029610 Cardamine hirsuta HOM05D003390 ORTHO05D004189 6.5e-49 198.0 144 70.1
Psat2g016080 Pisum sativum HOM05D003390 ORTHO05D004189 6.5e-49 198.0 180 62.8
SGA_v2.0_scaffold333G49014 Striga asiatica HOM05D003390 ORTHO05D004189 6.5e-49 198.0 163 64.4
Ah.09g232910 Amaranthus hybridus HOM05D003390 ORTHO05D004189 8.5e-49 197.6 144 68.1
Glyma.15G125900 Glycine max HOM05D003390 ORTHO05D004189 8.5e-49 197.6 166 63.3
Gohir.D06G205600 Gossypium hirsutum HOM05D003390 ORTHO05D004189 8.5e-49 197.6 144 70.8
Gorai.010G239900 Gossypium raimondii HOM05D003390 ORTHO05D004189 8.5e-49 197.6 144 70.8
DCAR_005073 Daucus carota HOM05D003390 ORTHO05D004189 1.1e-48 197.2 166 61.4
Gohir.A06G198200 Gossypium hirsutum HOM05D003390 ORTHO05D004189 1.1e-48 197.2 144 70.1
LjContig00049g0028197 Lotus japonicus HOM05D003390 ORTHO05D004189 1.1e-48 197.2 144 70.1
PGR031G1555 Punica granatum HOM05D003390 ORTHO05D004189 1.1e-48 197.2 163 64.4
Rhsim12G0071900 Rhododendron simsii HOM05D003390 ORTHO05D004189 1.1e-48 197.2 144 69.4
vmacro12466 Vaccinium macrocarpon HOM05D003390 ORTHO05D004189 1.1e-48 197.2 160 63.8
Sopen02g005990 Solanum pennellii HOM05D003390 ORTHO05D004189 1.4e-48 196.8 163 65.6
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 1.9e-48 196.4 144 68.8
C03p76240 Brassica napus HOM05D003390 ORTHO05D004189 1.9e-48 196.4 144 68.8
BolC3t19880H Brassica oleracea HOM05D003390 ORTHO05D004189 1.9e-48 196.4 144 68.8
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 1.9e-48 196.4 144 68.8
FAN16G0009 Fragaria x ananassa HOM05D003390 ORTHO05D004189 1.9e-48 196.4 166 63.3
Peaxi162Scf00121g02312 Petunia axillaris HOM05D003390 ORTHO05D004189 1.9e-48 196.4 163 65.6
Potri.001G353000 Populus trichocarpa HOM05D003390 ORTHO05D004189 1.9e-48 196.4 163 62.0
PGSC0003DMG400003171 Solanum tuberosum HOM05D003390 ORTHO05D004189 1.9e-48 196.4 163 65.6
Thecc.06G156600 Theobroma cacao HOM05D003390 ORTHO05D004189 1.9e-48 196.4 144 69.4
BcaC01g00142 Brassica carinata HOM05D003390 ORTHO05D004189 2.5e-48 196.1 144 68.8
Prupe.4G074800 Prunus persica HOM05D003390 ORTHO05D004189 2.5e-48 196.1 154 65.6
BcaB03g12182 Brassica carinata HOM05D003390 ORTHO05D004189 3.2e-48 195.7 144 68.8
CiPaw.09G127300 Carya illinoinensis HOM05D003390 ORTHO05D004189 3.2e-48 195.7 162 66.0
AUR62035789 Chenopodium quinoa HOM05D003390 ORTHO05D004189 3.2e-48 195.7 165 61.8
FAN14G5098 Fragaria x ananassa HOM05D003390 ORTHO05D004189 3.2e-48 195.7 156 69.9
AL1G43660 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 4.2e-48 195.3 144 69.4
Nitab4.5_0002209g0030 Nicotiana tabacum HOM05D003390 ORTHO05D004189 4.2e-48 195.3 144 69.4
TPR.G17505 Trifolium pratense HOM05D003390 ORTHO05D004189 4.2e-48 195.3 166 63.9
Haze_05526 Corylus avellana HOM05D003390 ORTHO05D004189 5.5e-48 194.9 164 64.6
DCAR_013317 Daucus carota HOM05D003390 ORTHO05D004189 5.5e-48 194.9 144 70.1
FAN21G1255 Fragaria x ananassa HOM05D003390 ORTHO05D004189 5.5e-48 194.9 166 62.7
Lalb_Chr10g0106641 Lupinus albus HOM05D003390 ORTHO05D004189 5.5e-48 194.9 144 68.1
Nitab4.5_0003104g0070 Nicotiana tabacum HOM05D003390 ORTHO05D004189 5.5e-48 194.9 144 68.8
Psat1g170120 Pisum sativum HOM05D003390 ORTHO05D004189 5.5e-48 194.9 166 63.9
QL05p060163 Quercus lobata HOM05D003390 ORTHO05D004189 7.2e-48 194.5 163 63.8
Sp1g25730 Schrenkiella parvula HOM05D003390 ORTHO05D004189 7.2e-48 194.5 144 68.8
Cc05_g09550 Coffea canephora HOM05D003390 ORTHO05D004189 9.4e-48 194.1 144 67.4
Duzib192G0036 Durio zibethinus HOM05D003390 ORTHO05D004189 9.4e-48 194.1 144 68.8
MSTRG.7463 Avicennia marina HOM05D003390 ORTHO05D004189 1.2e-47 193.7 144 68.1
EL10Ac8g19781 Beta vulgaris HOM05D003390 ORTHO05D004189 1.2e-47 193.7 144 66.0
ECA232G3556 Erigeron canadensis HOM05D003390 ORTHO05D004189 1.6e-47 193.4 144 68.8
Lalb_Chr18g0057721 Lupinus albus HOM05D003390 ORTHO05D004189 1.6e-47 193.4 166 62.0
AT1G29820 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 2.1e-47 193.0 144 68.8
Peaxi162Scf00035g02617 Petunia axillaris HOM05D003390 ORTHO05D004189 2.1e-47 193.0 144 70.1
THA.LOC104820634 Tarenaya hassleriana HOM05D003390 ORTHO05D004189 2.1e-47 193.0 144 68.1
Lsat_1_v5_gn_0_8061 Lactuca sativa HOM05D003390 ORTHO05D004189 3.6e-47 192.2 164 62.2
Lj6g0006873 Lotus japonicus HOM05D003390 ORTHO05D004189 3.6e-47 192.2 166 63.3
PSO135G0210 Papaver somniferum HOM05D003390 ORTHO05D004189 3.6e-47 192.2 166 62.7
CANSAT35G0642 Cannabis sativa HOM05D003390 ORTHO05D004189 4.7e-47 191.8 144 68.8
Gorai.006G007900 Gossypium raimondii HOM05D003390 ORTHO05D004189 4.7e-47 191.8 171 62.0
SGA_v2.0_scaffold4G02117 Striga asiatica HOM05D003390 ORTHO05D004189 4.7e-47 191.8 144 69.4
Phvul.006G132300 Phaseolus vulgaris HOM05D003390 ORTHO05D004189 6.1e-47 191.4 167 61.1
unitig_748.g7439 Utricularia gibba HOM05D003390 ORTHO05D004189 6.1e-47 191.4 144 69.4
Ca_11357_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 8.0e-47 191.0 163 63.2
Medtr5g091570 Medicago truncatula HOM05D003390 ORTHO05D004189 8.0e-47 191.0 144 68.1
SHI35740 Sapria himalayana HOM05D003390 ORTHO05D004189 8.0e-47 191.0 162 63.0
Sed0005552 Sechium edule HOM05D003390 ORTHO05D004189 8.0e-47 191.0 144 68.8
Gohir.A09G007100 Gossypium hirsutum HOM05D003390 ORTHO05D004189 1.0e-46 190.7 171 61.4
Medtr2g028770 Medicago truncatula HOM05D003390 ORTHO05D004189 1.0e-46 190.7 166 61.4
HanXRQChr16g0525801 Helianthus annuus HOM05D003390 ORTHO05D004189 1.4e-46 190.3 154 62.3
Carub.0001s2807 Capsella rubella HOM05D003390 ORTHO05D004189 1.8e-46 189.9 144 68.1
ClCG03G007130 Citrullus lanatus HOM05D003390 ORTHO05D004189 1.8e-46 189.9 144 68.8
CDE08G1393 Ceratophyllum demersum HOM05D003390 ORTHO05D004189 2.3e-46 189.5 144 63.9
HanXRQChr05g0147821 Helianthus annuus HOM05D003390 ORTHO05D004189 2.3e-46 189.5 144 66.7
MBI07_g07829_MAGBIO Magnolia biondii HOM05D003390 ORTHO05D004189 2.3e-46 189.5 163 62.6
Migut.H02104 Erythranthe guttata HOM05D003390 ORTHO05D004189 3.0e-46 189.1 169 58.6
Hund21490 Selenicereus undatus HOM05D003390 ORTHO05D004189 3.0e-46 189.1 144 66.7
Solyc10g007740.3 Solanum lycopersicum HOM05D003390 ORTHO05D004189 3.0e-46 189.1 144 69.4
Ca_06279_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 3.9e-46 188.7 144 69.4
Ca_30614_v3 Cicer arietinum L. HOM05D003390 ORTHO05D004189 3.9e-46 188.7 144 69.4
SalBow7G4851 Salvia bowleyana HOM05D003390 ORTHO05D004189 5.2e-46 188.3 161 62.1
TPR.G12521 Trifolium pratense HOM05D003390 ORTHO05D004189 6.7e-46 188.0 167 61.1
Thhalv10007315m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 8.8e-46 187.6 144 66.0
Sopen10g003650 Solanum pennellii HOM05D003390 ORTHO05D004189 8.8e-46 187.6 144 69.4
PGSC0003DMG400021242 Solanum tuberosum HOM05D003390 ORTHO05D004189 8.8e-46 187.6 144 68.1
TAR626G0692 Trochodendron aralioides HOM05D003390 ORTHO05D004189 8.8e-46 187.6 169 61.5
Actinidia39555 Actinidia chinensis HOM05D003390 ORTHO05D004189 1.1e-45 187.2 144 68.8
Lj2A310T45 Lonicera japonica HOM05D003390 ORTHO05D004189 1.1e-45 187.2 163 61.3
MELO3C002711.2 Cucumis melo HOM05D003390 ORTHO05D004189 3.3e-45 185.7 144 66.7
CsaV3_1G032710 Cucumis sativus L. HOM05D003390 ORTHO05D004189 3.3e-45 185.7 144 66.7
ECA234G1186 Erigeron canadensis HOM05D003390 ORTHO05D004189 4.4e-45 185.3 158 61.4
CAN.G2018.1 Capsicum annuum HOM05D003390 ORTHO05D004189 5.7e-45 184.9 144 67.4
Oeu020929.2 Olea europaea HOM05D003390 ORTHO05D004189 5.7e-45 184.9 144 66.7
Glyma.02G285600 Glycine max HOM05D003390 ORTHO05D004189 7.4e-45 184.5 167 60.5
Os01g0664100 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 1.7e-44 183.3 153 59.5
HPP92_008023 Vanilla planifolia HOM05D003390 ORTHO05D004189 3.7e-44 182.2 164 58.5
Thhalv10016539m.g Eutrema salsugineum HOM05D003390 ORTHO05D004189 2.4e-43 179.5 144 62.5
Solyc02g021480.4 Solanum lycopersicum HOM05D003390 ORTHO05D004189 5.3e-43 178.3 144 66.7
C04p69990 Brassica napus HOM05D003390 ORTHO05D004189 2.0e-42 176.4 144 61.1
arahy.Tifrunner.gnm1.ann1.0JHG5Q Arachis hypogaea HOM05D003390 ORTHO05D004189 4.5e-42 175.3 144 62.5
AL4G41580 Arabidopsis lyrata HOM05D003390 ORTHO05D004189 5.9e-42 174.9 144 60.4
arahy.Tifrunner.gnm1.ann1.VAF4MI Arachis hypogaea HOM05D003390 ORTHO05D004189 5.9e-42 174.9 144 61.8
AT2G42950 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 1.0e-41 174.1 144 59.7
ATR1131G058 Amborella trichopoda HOM05D003390 ORTHO05D004189 3.8e-41 172.2 154 56.5
BcaC02g07214 Brassica carinata HOM05D003390 ORTHO05D004189 5.0e-41 171.8 144 60.4
BNapus_Darmor_BZH_scaffold_64p00180 Brassica napus HOM05D003390 ORTHO05D004189 5.0e-41 171.8 144 60.4
BolC4t28499H Brassica oleracea HOM05D003390 ORTHO05D004189 5.0e-41 171.8 144 60.4
BraA04t18699Z Brassica rapa HOM05D003390 ORTHO05D004189 5.0e-41 171.8 144 60.4
Sp4g25080 Schrenkiella parvula HOM05D003390 ORTHO05D004189 5.0e-41 171.8 144 59.7
Carub.0004s2542 Capsella rubella HOM05D003390 ORTHO05D004189 6.5e-41 171.4 144 59.7
Lsat_1_v5_gn_4_29721 Lactuca sativa HOM05D003390 ORTHO05D004189 6.5e-41 171.4 175 52.6
Os01g0601000 Oryza sativa ssp. japonica HOM05D003390 ORTHO05D004189 8.5e-41 171.0 144 62.5
CARHR138010 Cardamine hirsuta HOM05D003390 ORTHO05D004189 2.5e-40 169.5 144 59.0
BcaB06g29273 Brassica carinata HOM05D003390 ORTHO05D004189 3.2e-40 169.1 144 59.0
Lj1A614G6 Lonicera japonica HOM05D003390 ORTHO05D004189 9.4e-40 167.5 143 61.5
Aa31LG1G24700 Aethionema arabicum HOM05D003390 ORTHO05D004189 1.8e-38 163.3 144 57.6
SEGI_30082 Sequoiadendron giganteum HOM05D003390 ORTHO05D004189 6.7e-38 161.4 144 57.6
TPR.G17499 Trifolium pratense HOM05D003390 ORTHO05D004189 8.8e-38 161.0 166 54.2
AT1G29830 Arabidopsis thaliana HOM05D003390 ORTHO05D004189 9.7e-37 157.5 154 53.9
LjContig00141g0021144 Lotus japonicus HOM05D003390 ORTHO05D004791 4.1e-35 152.1 158 55.1
Eucgr.A01984 Eucalyptus grandis HOM05D003390 ORTHO05D004189 1.2e-34 150.6 136 62.5
AagrBONN_evm.TU.Sc2ySwM_228.3525 Anthoceros agrestis HOM05D003390 ORTHO05D004189 4.5e-34 148.7 144 55.6
FAN19G1589 Fragaria x ananassa HOM05D003390 ORTHO05D004189 3.2e-32 142.5 163 50.3
FvH4_1g24850 Fragaria vesca HOM05D003390 ORTHO05D004189 7.2e-32 141.4 163 49.7
Eucgr.A01987 Eucalyptus grandis HOM05D003390 ORTHO05D004189 2.7e-31 139.4 139 58.3
COL.COLO4_08451 Corchorus olitorius HOM05D003390 ORTHO05D004189 3.6e-31 139.0 124 63.7
Nn4g26479 Nelumbo nucifera HOM05D003390 ORTHO05D004189 6.8e-30 134.8 101 67.3
FAN26G2057 Fragaria x ananassa HOM05D003390 ORTHO05D004189 8.8e-30 134.4 163 49.1
COL.COLO4_07487 Corchorus olitorius HOM05D003390 ORTHO05D004189 1.2e-29 134.0 97 72.2
Mapoly0130s0010 Marchantia polymorpha HOM05D003390 ORTHO05D004189 5.7e-29 131.7 144 52.1
FvH4_6g38330 Fragaria vesca HOM05D003390 ORTHO05D004189 4.8e-28 128.6 76 85.5
Gohir.D09G006300 Gossypium hirsutum HOM05D003390 ORTHO05D004189 5.4e-27 125.2 83 72.3
Pp3c9_12460 Physcomitrium patens HOM05D003390 ORTHO05D004189 1.2e-26 124.0 144 46.5
Prupe.4G074700 Prunus persica HOM05D003390 ORTHO05D004189 3.5e-26 122.5 98 64.3
Pp3c9_16960 Physcomitrium patens HOM05D003390 ORTHO05D004189 6.6e-25 118.2 144 45.1
PSO541G3465 Papaver somniferum HOM05D003390 ORTHO05D004189 6.1e-23 111.7 110 53.6
MD17G1138500 Malus domestica HOM05D003390 ORTHO05D004189 1.4e-22 110.5 181 44.2
Pp3c15_4880 Physcomitrium patens HOM05D003390 ORTHO05D004189 5.7e-21 105.1 137 42.3
Atru.chr10.1372 Acer truncatum HOM05D003390 ORTHO05D004189 5.2e-14 82.0 60 68.3
Actinidia07674 Actinidia chinensis HOM05D003390 ORTHO05D004189 1.2e-10 70.9 84 51.2
Cpa.g.sc50.94 Carica papaya HOM05D003390 ORTHO05D004189 1.2e-07 60.8 47 63.8
Glyma.14G028650 Glycine max HOM05D003390 ORTHO05D004189 3.1e-06 56.2 52 53.8


User provided reference genes

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