Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.5e-118 429.5 216 100.0
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.4e-114 416.4 216 96.8
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.0e-114 415.2 216 96.3
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 2.4e-111 405.6 216 94.4
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.4e-111 405.6 216 94.4
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.4e-111 405.6 216 94.4
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 5.0e-101 371.3 217 86.2
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 2.3e-77 292.7 219 72.6
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 1.8e-74 283.1 212 71.7
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 1.5e-60 236.9 186 66.7
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 8.9e-58 227.6 214 62.1
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 1.7e-56 223.4 196 63.8
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 2.9e-56 222.6 215 61.4
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 2.9e-56 222.6 211 60.7
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 6.4e-56 221.5 218 61.5
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 1.1e-55 220.7 215 62.3
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 1.4e-55 220.3 208 58.7
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 4.1e-55 218.8 215 59.1
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 3.5e-54 215.7 214 59.3
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 2.3e-53 213.0 212 60.8
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.6e-53 211.5 215 58.1
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.9e-52 209.9 212 59.0
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.6e-51 206.8 212 58.5
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 2.1e-51 206.5 204 59.8
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.6e-51 205.7 215 57.7
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.2e-51 204.9 215 57.2
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 2.3e-50 203.0 216 56.0
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 4.0e-50 202.2 210 57.1
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 6.8e-50 201.4 203 55.7
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.8e-50 201.4 215 56.7
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.8e-50 201.4 215 56.3
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 1.5e-49 200.3 218 57.8
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.6e-49 198.0 215 54.4
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 9.9e-49 197.6 215 54.4
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 2.2e-48 196.4 238 52.1
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.9e-48 195.3 215 54.4
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 1.6e-46 190.3 218 54.6
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.7e-45 186.8 204 52.0
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.3e-45 186.4 216 53.2
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 2.3e-45 186.4 216 55.1
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 3.0e-45 186.0 217 52.5
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 6.6e-45 184.9 210 54.8
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.5e-44 183.7 196 57.7
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 1.5e-44 183.7 206 53.9
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.9e-44 183.3 189 57.7
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.6e-43 180.3 213 52.1
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.4e-42 176.4 190 55.8
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 4.0e-42 175.6 207 53.1
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 8.9e-42 174.5 222 51.8
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.5e-41 173.7 198 58.6
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 2.0e-41 173.3 221 50.2
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.6e-41 172.9 203 51.7
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 3.4e-41 172.6 214 50.9
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 4.4e-41 172.2 216 50.5
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 7.6e-41 171.4 231 47.6
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 7.6e-41 171.4 216 50.5
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.3e-40 170.6 227 47.6
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 2.9e-40 169.5 218 50.9
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 2.9e-40 169.5 225 47.6
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.9e-40 169.5 196 51.5
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 5.4e-39 165.2 217 48.8
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 5.4e-39 165.2 218 49.5
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 5.4e-39 165.2 212 49.1
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 9.3e-39 164.5 209 47.4
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 2.7e-38 162.9 231 47.6
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 6.0e-38 161.8 216 50.5
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 6.0e-38 161.8 211 50.7
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 6.0e-38 161.8 216 47.7
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.0e-37 161.0 214 48.1
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.0e-37 161.0 191 52.9
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.3e-37 160.6 224 46.9
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 1.7e-37 160.2 223 48.0
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 2.3e-37 159.8 226 50.0
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 2.3e-37 159.8 204 48.0
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 3.0e-37 159.5 215 49.8
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 3.9e-37 159.1 206 48.1
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 3.9e-37 159.1 227 47.1
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 5.1e-37 158.7 212 49.1
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 5.1e-37 158.7 217 51.6
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.1e-36 157.5 219 47.0
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.9e-36 156.8 217 50.2
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 3.3e-36 156.0 224 47.3
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.6e-35 153.7 226 44.7
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 2.8e-35 152.9 223 44.4
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 3.6e-35 152.5 194 51.5
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 4.8e-35 152.1 200 50.5
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 4.8e-35 152.1 226 46.0
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 6.2e-35 151.8 215 47.4
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 6.2e-35 151.8 207 51.2
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.4e-34 150.6 213 48.4
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.4e-34 149.8 220 44.5
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 5.3e-34 148.7 204 48.0
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.2e-33 147.5 158 51.9
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.5e-33 147.1 196 50.5
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.5e-33 147.1 204 48.0
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 2.0e-33 146.7 215 43.7
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 2.0e-33 146.7 125 65.6
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 4.5e-33 145.6 215 45.1
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 7.6e-33 144.8 221 46.2
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 2.9e-32 142.9 195 48.7
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 4.9e-32 142.1 195 45.1
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 4.9e-32 142.1 202 46.0
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 6.4e-32 141.7 202 49.5
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 6.4e-32 141.7 194 46.9
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 6.4e-32 141.7 225 44.4
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 1.1e-31 141.0 207 45.9
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.1e-31 141.0 210 45.2
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.9e-31 140.2 217 44.7
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 2.4e-31 139.8 207 46.4
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 3.2e-31 139.4 215 44.7
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 3.2e-31 139.4 218 41.3
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.4e-31 138.7 212 46.2
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 5.4e-31 138.7 212 46.2
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 2.1e-30 136.7 227 42.7
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 2.7e-30 136.3 219 45.2
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 3.5e-30 136.0 154 50.6
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 3.5e-30 136.0 228 42.1
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 3.5e-30 136.0 197 46.2
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 4.6e-30 135.6 219 44.7
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 2.3e-29 133.3 152 49.3
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 3.0e-29 132.9 198 44.9
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.0e-29 132.9 198 44.4
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 3.0e-29 132.9 203 44.3
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 3.9e-29 132.5 190 45.3
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 3.9e-29 132.5 198 44.9
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 5.1e-29 132.1 190 45.3
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 6.7e-29 131.7 207 41.5
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 8.7e-29 131.3 195 44.1
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 1.9e-28 130.2 193 44.6
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 1.9e-28 130.2 193 44.6
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 3.3e-28 129.4 176 46.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 4.3e-28 129.0 188 45.7
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 5.6e-28 128.6 203 44.8
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 5.6e-28 128.6 203 44.8
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 7.4e-28 128.3 204 44.6
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 7.4e-28 128.3 169 45.6
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 9.6e-28 127.9 199 42.7
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 9.6e-28 127.9 133 54.1
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 4.8e-27 125.6 189 43.9
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 4.8e-27 125.6 202 44.1
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.4e-26 124.0 187 43.9
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 1.4e-26 124.0 118 61.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.3e-26 122.1 188 43.6
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 5.3e-26 122.1 194 43.3
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.2e-25 120.9 186 46.2
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 2.0e-25 120.2 194 43.3
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.0e-25 120.2 188 43.1
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 2.6e-25 119.8 192 41.7
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 3.4e-25 119.4 193 44.6
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-24 117.5 189 42.3
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.3e-24 117.5 187 42.8
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 2.2e-24 116.7 184 42.9
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 2.9e-24 116.3 193 40.4
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 2.9e-24 116.3 219 39.3
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 6.4e-24 115.2 149 47.7
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 2.4e-23 113.2 184 40.8
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 5.5e-23 112.1 187 41.2
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 5.5e-23 112.1 200 39.5
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 9.3e-23 111.3 272 33.8
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 6.0e-22 108.6 135 47.4
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.8e-21 107.1 146 45.9
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.3e-21 106.7 145 46.2
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 3.0e-21 106.3 184 39.1
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.9e-20 103.6 117 49.6
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 9.6e-20 101.3 140 42.1
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.3e-19 100.9 195 40.0
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.4e-18 97.4 128 45.3
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 8.4e-16 88.2 173 36.4
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.4e-15 87.4 107 50.5
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 2.5e-15 86.7 173 35.3
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 3.2e-15 86.3 192 34.9
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.6e-14 84.0 199 36.2
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 2.1e-14 83.6 154 39.6
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 3.5e-14 82.8 193 34.2
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.3e-13 80.9 207 36.2
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 1.8e-13 80.5 194 34.0
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 3.0e-13 79.7 193 33.2
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 3.0e-13 79.7 193 33.7
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 6.7e-13 78.6 193 32.6
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 8.7e-13 78.2 89 47.2
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.8e-10 70.5 198 33.8
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 1.8e-10 70.5 205 29.8
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 1.2e-09 67.8 61 59.0
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 2.9e-08 63.2 167 32.3
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 7.2e-07 58.5 149 32.2


User provided reference genes

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