Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0358 Fragaria x ananassa HOM05D006727 ORTHO05D008408 5.0e-128 461.1 225 100.0
FAN14G1566 Fragaria x ananassa HOM05D006727 ORTHO05D008408 2.6e-124 448.7 225 96.9
FvH4_6g10100 Fragaria vesca HOM05D006727 ORTHO05D008408 2.8e-123 445.3 225 96.4
FAN05G4632 Fragaria x ananassa HOM05D006727 ORTHO05D008408 8.2e-123 443.7 225 96.4
FAN05G1856 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.4e-122 443.0 225 96.4
RcHm_v2.0_Chr3g0460801 Rosa chinensis HOM05D006727 ORTHO05D008408 3.0e-117 425.2 225 92.0
Prupe.6G291700 Prunus persica HOM05D006727 ORTHO05D008408 1.7e-112 409.5 225 87.1
MD12G1186200 Malus domestica HOM05D006727 ORTHO05D008408 2.1e-110 402.5 226 86.7
MD04G1172900 Malus domestica HOM05D006727 ORTHO05D008408 6.8e-109 397.5 227 85.0
Manes.09G116800 Manihot esculenta HOM05D006727 ORTHO05D008408 1.4e-106 389.8 225 84.0
Thecc.04G153700 Theobroma cacao HOM05D006727 ORTHO05D008408 1.3e-104 383.3 215 85.1
CSS0002185 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 8.6e-104 380.6 223 81.6
Gorai.011G128700 Gossypium raimondii HOM05D006727 ORTHO05D008408 1.9e-103 379.4 215 83.7
CSS0012941 Camellia sinensis var. sinensis HOM05D006727 ORTHO05D008408 5.6e-103 377.9 223 80.7
Gohir.A10G149900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 5.6e-103 377.9 215 83.3
Gohir.D10G116900 Gossypium hirsutum HOM05D006727 ORTHO05D008408 9.5e-103 377.1 215 83.3
QL07p032522 Quercus lobata HOM05D006727 ORTHO05D008408 2.1e-102 375.9 211 83.4
Duzib212G0227 Durio zibethinus HOM05D006727 ORTHO05D008408 2.8e-102 375.6 215 83.7
Cfa017053 Carpinus fangiana HOM05D006727 ORTHO05D008408 2.3e-101 372.5 226 79.2
Dinv25328 Davidia involucrata HOM05D006727 ORTHO05D008408 3.0e-101 372.1 217 82.9
Dinv11373 Davidia involucrata HOM05D006727 ORTHO05D008408 4.0e-101 371.7 217 82.0
Potri.016G134700 Populus trichocarpa HOM05D006727 ORTHO05D008408 2.0e-100 369.4 205 83.4
COL.COLO4_16540 Corchorus olitorius HOM05D006727 ORTHO05D008408 2.6e-100 369.0 212 82.1
TAR220G0001 Trochodendron aralioides HOM05D006727 ORTHO05D008408 7.5e-100 367.5 215 80.5
CiPaw.09G219900 Carya illinoinensis HOM05D006727 ORTHO05D008408 1.7e-99 366.3 225 77.8
HanXRQChr01g0000191 Helianthus annuus HOM05D006727 ORTHO05D008408 4.9e-99 364.8 226 79.2
TWI53G1665 Tripterygium wilfordii HOM05D006727 ORTHO05D008408 4.9e-99 364.8 225 78.2
Aqoxy4G02378 Aquilegia oxysepala HOM05D006727 ORTHO05D008408 8.3e-99 364.0 219 80.8
MELO3C009112.2 Cucumis melo HOM05D006727 ORTHO05D008408 1.1e-98 363.6 214 80.8
Hund03725 Selenicereus undatus HOM05D006727 ORTHO05D008408 1.8e-98 362.8 225 76.9
Atru.chr8.2386 Acer truncatum HOM05D006727 ORTHO05D008408 4.1e-98 361.7 219 77.6
GSVIVG01030200001 Vitis vinifera HOM05D006727 ORTHO05D008408 5.4e-98 361.3 219 79.5
CsaV3_3G033190 Cucumis sativus L. HOM05D006727 ORTHO05D008408 7.0e-98 360.9 214 79.4
PGR004G2541 Punica granatum HOM05D006727 ORTHO05D008408 9.2e-98 360.5 217 79.7
Rhsim05G0229700 Rhododendron simsii HOM05D006727 ORTHO05D008408 9.2e-98 360.5 218 81.7
Nitab4.5_0000950g0010 Nicotiana tabacum HOM05D006727 ORTHO05D008408 2.0e-97 359.4 220 75.9
PSO017G7044 Papaver somniferum HOM05D006727 ORTHO05D008408 2.0e-97 359.4 215 77.2
CANSAT35G0523 Cannabis sativa HOM05D006727 ORTHO05D008408 2.7e-97 359.0 221 78.7
Sc19g0002650 Simmondsia chinensis HOM05D006727 ORTHO05D008408 5.9e-97 357.8 225 75.6
Peaxi162Scf00732g00434 Petunia axillaris HOM05D006727 ORTHO05D008408 1.0e-96 357.1 216 76.9
Sabra04G0152100 Salix brachista HOM05D006727 ORTHO05D008408 1.3e-96 356.7 226 75.2
THA.LOC104823356 Tarenaya hassleriana HOM05D006727 ORTHO05D008408 2.3e-96 355.9 212 77.4
Sed0012883 Sechium edule HOM05D006727 ORTHO05D008408 3.9e-96 355.1 211 78.7
Phvul.008G083900 Phaseolus vulgaris HOM05D006727 ORTHO05D008408 5.0e-96 354.8 216 79.6
Migut.J00054 Erythranthe guttata HOM05D006727 ORTHO05D008408 1.1e-95 353.6 217 76.5
Lalb_Chr19g0124021 Lupinus albus HOM05D006727 ORTHO05D008408 4.3e-95 351.7 217 77.4
arahy.Tifrunner.gnm1.ann1.U8U4T8 Arachis hypogaea HOM05D006727 ORTHO05D008408 5.6e-95 351.3 218 75.7
ECA248G2137 Erigeron canadensis HOM05D006727 ORTHO05D008408 5.6e-95 351.3 199 84.4
arahy.Tifrunner.gnm1.ann1.SP3HKJ Arachis hypogaea HOM05D006727 ORTHO05D008408 7.3e-95 350.9 218 75.7
Glyma.18G215000 Glycine max HOM05D006727 ORTHO05D008408 9.5e-95 350.5 220 76.8
Lsat_1_v5_gn_5_150061 Lactuca sativa HOM05D006727 ORTHO05D008408 9.5e-95 350.5 218 79.4
SGA_v2.0_scaffold373G50173 Striga asiatica HOM05D006727 ORTHO05D008408 9.5e-95 350.5 225 75.1
Lj1g0012647 Lotus japonicus HOM05D006727 ORTHO05D008408 4.7e-94 348.2 205 77.1
Cc06_g00470 Coffea canephora HOM05D006727 ORTHO05D008408 1.0e-93 347.1 221 74.7
Ciclev10012697m.g Citrus clementina HOM05D006727 ORTHO05D008408 1.4e-93 346.7 219 74.9
EL10Ac7g17073 Beta vulgaris HOM05D006727 ORTHO05D008408 1.8e-93 346.3 205 80.5
Eucgr.K01278 Eucalyptus grandis HOM05D006727 ORTHO05D008408 5.2e-93 344.7 224 73.2
Glyma.09G276200 Glycine max HOM05D006727 ORTHO05D008408 8.9e-93 344.0 220 75.5
Medtr7g072680 Medicago truncatula HOM05D006727 ORTHO05D008408 1.2e-92 343.6 205 77.6
TPR.G26930 Trifolium pratense HOM05D006727 ORTHO05D008408 2.0e-92 342.8 215 74.4
MSTRG.18948 Avicennia marina HOM05D006727 ORTHO05D008408 1.7e-91 339.7 214 74.3
Aa31sc296G30 Aethionema arabicum HOM05D006727 ORTHO05D008408 6.4e-91 337.8 219 74.0
Psat3g120440 Pisum sativum HOM05D006727 ORTHO05D008408 8.3e-91 337.4 214 73.4
Zm00001eb281990 Zea mays HOM05D006727 ORTHO05D008408 9.2e-90 334.0 217 72.4
HPP92_001138 Vanilla planifolia HOM05D006727 ORTHO05D008408 2.7e-89 332.4 225 68.9
FAN09G3050 Fragaria x ananassa HOM05D006727 ORTHO05D008408 1.7e-88 329.7 171 93.0
BcaC09g50100 Brassica carinata HOM05D006727 ORTHO05D008408 3.0e-88 328.9 227 71.8
C01p28960 Brassica napus HOM05D006727 ORTHO05D008408 3.0e-88 328.9 227 71.8
BolC1t02827H Brassica oleracea HOM05D006727 ORTHO05D008408 3.0e-88 328.9 227 71.8
CARHR161200 Cardamine hirsuta HOM05D006727 ORTHO05D008408 3.9e-88 328.6 215 74.0
Thhalv10010694m.g Eutrema salsugineum HOM05D006727 ORTHO05D008408 5.0e-88 328.2 211 74.9
Carub.0005s1797 Capsella rubella HOM05D006727 ORTHO05D008408 1.1e-87 327.0 215 74.0
BcaNung00375 Brassica carinata HOM05D006727 ORTHO05D008408 4.3e-87 325.1 219 72.1
AT3G51610 Arabidopsis thaliana HOM05D006727 ORTHO05D008408 7.3e-87 324.3 203 75.9
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 1.2e-86 323.6 208 70.7
Haze_21159 Corylus avellana HOM05D006727 ORTHO05D008408 1.2e-86 323.6 178 85.4
AL5G32050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 1.6e-86 323.2 203 75.4
A01p23320 Brassica napus HOM05D006727 ORTHO05D008408 2.8e-86 322.4 230 70.4
BraA01t02241Z Brassica rapa HOM05D006727 ORTHO05D008408 2.8e-86 322.4 230 70.4
Os05g0168400 Oryza sativa ssp. japonica HOM05D006727 ORTHO05D008408 1.1e-85 320.5 209 71.3
vmacro20362 Vaccinium macrocarpon HOM05D006727 ORTHO05D008408 3.4e-84 315.5 222 72.5
PSO170G4157 Papaver somniferum HOM05D006727 ORTHO05D008408 1.3e-83 313.5 178 80.3
CDE04G1801 Ceratophyllum demersum HOM05D006727 ORTHO05D008408 2.4e-82 309.3 168 80.4
Oeu026955.4 Olea europaea HOM05D006727 ORTHO05D008408 1.2e-81 307.0 260 60.0
Ah.15g090120 Amaranthus hybridus HOM05D006727 ORTHO05D008408 2.5e-79 299.3 218 70.6
Nn2g10333 Nelumbo nucifera HOM05D006727 ORTHO05D008408 5.6e-79 298.1 182 75.3
Sp5g10660 Schrenkiella parvula HOM05D006727 ORTHO05D008408 4.9e-75 285.0 179 74.3
unitig_749.g14090 Utricularia gibba HOM05D006727 ORTHO05D008408 6.0e-73 278.1 186 68.8
TAR623G1271 Trochodendron aralioides HOM05D006727 ORTHO05D008408 6.2e-70 268.1 218 65.6
CAN.G119.2 Capsicum annuum HOM05D006727 ORTHO05D008408 4.0e-69 265.4 143 82.5
Mapoly0003s0079 Marchantia polymorpha HOM05D006727 ORTHO05D008408 2.2e-67 259.6 222 54.5
ClCG10G022640 Citrullus lanatus HOM05D006727 ORTHO05D008408 6.0e-65 251.5 214 62.6
SMO356G0277 Selaginella moellendorffii HOM05D006727 ORTHO05D008408 1.1e-63 247.3 192 56.8
AUR62006372 Chenopodium quinoa HOM05D006727 ORTHO05D008408 3.6e-62 242.3 225 57.8
Nitab4.5_0000330g0040 Nicotiana tabacum HOM05D006727 ORTHO05D008408 2.6e-60 236.1 140 77.9
Pp3c2_32200 Physcomitrium patens HOM05D006727 ORTHO05D008408 9.9e-60 234.2 220 51.4
Actinidia20787 Actinidia chinensis HOM05D006727 ORTHO05D008408 3.2e-58 229.2 129 82.2
Ca_07756_v3 Cicer arietinum L. HOM05D006727 ORTHO05D008408 1.7e-51 206.8 140 68.6
SHI12925 Sapria himalayana HOM05D006727 ORTHO05D008408 5.6e-47 191.8 137 67.9
Sopen03g037430 Solanum pennellii HOM05D006727 ORTHO05D008408 1.1e-45 187.6 115 76.5
AagrBONN_evm.TU.Sc2ySwM_344.2624 Anthoceros agrestis HOM05D006727 ORTHO05D008408 7.6e-44 181.4 155 51.0
Oeu060435.2 Olea europaea HOM05D006727 ORTHO05D008408 7.1e-42 174.9 103 77.7
Cre01.g049450 Chlamydomonas reinhardtii HOM05D006727 ORTHO05D008408 2.1e-38 163.3 216 37.0
BraA09t39934Z Brassica rapa HOM05D006727 ORTHO05D008408 6.5e-35 151.8 128 61.7
A09p44730 Brassica napus HOM05D006727 ORTHO05D008408 5.5e-34 148.7 128 59.4
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 4.3e-31 139.0 223 29.6
AagrBONN_evm.TU.Sc2ySwM_344.2622 Anthoceros agrestis HOM05D006727 ORTHO05D008408 2.6e-28 129.8 107 52.3
MCO09G625 Micromonas commoda HOM05D006727 ORTHO05D008408 3.4e-28 129.4 168 35.1
Solyc03g118520.4 Solanum lycopersicum HOM05D006727 ORTHO05D008408 2.9e-27 126.3 88 70.5
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 1.9e-26 123.6 75 73.3
Sopen03g037400 Solanum pennellii HOM05D006727 ORTHO05D008408 5.5e-26 122.1 83 71.1
SEGI_08771 Sequoiadendron giganteum HOM05D006727 ORTHO05D008408 9.7e-23 111.3 58 75.9
AL1G25050 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 8.5e-19 98.2 67 70.1
AL8G15680 Arabidopsis lyrata HOM05D006727 ORTHO05D008408 3.2e-18 96.3 51 80.4
BolC8t50296H Brassica oleracea HOM05D006727 ORTHO05D008408 2.3e-16 90.1 71 60.6
MD12G1088300 Malus domestica HOM05D006727 ORTHO05D008408 1.1e-15 87.8 70 67.1
CBR_g50885 Chara braunii HOM05D006727 ORTHO05D008408 2.2e-14 83.6 126 34.9
Carub.0007s3202 Capsella rubella HOM05D006727 ORTHO05D008408 7.7e-12 75.1 58 70.7
A03p48380 Brassica napus HOM05D023373 ORTHO05D024557 5.7e-07 58.9 93 43.0


User provided reference genes

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