Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.4e-254 882.5 441 100.0
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 2.0e-242 842.0 441 95.7
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 1.1e-232 809.7 443 92.3
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 2.1e-207 725.7 380 96.6
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 2.4e-206 722.2 380 96.1
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 9.0e-190 667.2 453 74.4
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 4.9e-188 661.4 453 72.8
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 5.6e-176 621.3 451 70.1
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 2.0e-173 612.8 450 70.4
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 2.5e-171 605.9 450 68.7
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 2.5e-171 605.9 456 69.5
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 7.9e-170 600.9 457 68.7
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 1.5e-168 596.7 453 68.4
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 1.5e-168 596.7 452 68.6
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 4.8e-167 591.7 455 68.6
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 6.9e-166 587.8 453 67.3
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 2.0e-165 586.3 451 66.3
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 1.0e-164 583.9 461 67.7
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 3.8e-164 582.0 453 66.2
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 5.0e-164 581.6 455 66.2
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 1.4e-163 580.1 454 66.7
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 2.1e-162 576.2 453 65.3
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 6.1e-162 574.7 453 67.3
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 3.9e-161 572.0 457 65.9
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 2.0e-160 569.7 477 62.5
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 7.4e-160 567.8 452 65.7
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 9.7e-160 567.4 472 64.2
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 1.3e-159 567.0 451 64.7
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 1.7e-159 566.6 490 61.6
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 2.2e-159 566.2 457 65.2
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 2.8e-159 565.8 426 67.8
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 1.8e-158 563.1 453 64.5
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 2.4e-158 562.8 439 64.9
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 2.4e-158 562.8 449 65.9
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 3.1e-158 562.4 453 65.3
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 1.2e-157 560.5 455 66.2
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 3.4e-157 558.9 454 64.8
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 7.7e-157 557.8 446 63.9
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 6.5e-156 554.7 454 64.8
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 1.4e-155 553.5 454 64.3
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 2.5e-155 552.7 442 65.4
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 9.4e-155 550.8 449 64.4
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 6.7e-153 544.7 430 65.1
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.7e-153 544.7 451 61.9
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 1.5e-152 543.5 446 63.5
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 2.0e-152 543.1 447 63.1
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 7.4e-152 541.2 447 64.2
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 7.4e-152 541.2 447 63.1
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 9.7e-152 540.8 447 63.1
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 1.7e-151 540.0 430 64.9
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 1.1e-150 537.3 459 62.3
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 4.1e-150 535.4 458 61.4
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 4.1e-150 535.4 447 62.9
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 1.0e-148 530.8 450 62.4
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 1.7e-148 530.0 448 63.6
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 6.5e-148 528.1 378 71.7
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 1.1e-147 527.3 451 62.3
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 4.2e-147 525.4 459 62.7
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 1.8e-145 520.0 461 61.6
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 3.9e-145 518.8 455 60.4
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 5.2e-145 518.5 453 61.1
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.1e-144 517.3 448 61.6
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 2.8e-143 512.7 453 60.0
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 2.8e-143 512.7 452 59.5
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 3.7e-143 512.3 441 61.9
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 1.8e-142 510.0 454 59.9
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 1.8e-142 510.0 454 59.9
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 4.1e-142 508.8 455 60.7
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 4.1e-142 508.8 416 64.2
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 7.0e-142 508.1 340 75.6
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 1.2e-141 507.3 458 59.6
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 1.2e-141 507.3 453 59.8
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 2.0e-141 506.5 456 60.5
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 1.7e-140 503.4 464 59.3
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 3.8e-140 502.3 408 64.2
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 2.5e-139 499.6 481 58.2
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 9.4e-139 497.7 340 74.1
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 1.2e-138 497.3 340 73.2
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 2.1e-138 496.5 465 58.7
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 3.6e-138 495.7 470 58.5
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 1.4e-137 493.8 460 58.3
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 2.4e-134 483.0 496 55.2
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 7.0e-134 481.5 441 57.1
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 7.7e-133 478.0 451 58.1
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 1.9e-131 473.4 398 63.1
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 2.1e-130 469.9 337 71.5
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 2.3e-129 466.5 333 69.1
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 6.8e-129 464.9 463 54.9
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 1.3e-127 460.7 372 64.8
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 7.0e-118 428.3 458 52.2
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 1.2e-117 427.6 461 52.7
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 3.5e-117 426.0 455 51.9
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 9.5e-115 417.9 476 48.9
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 2.1e-114 416.8 256 79.7
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 2.8e-114 416.4 321 67.9
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 3.6e-114 416.0 390 56.9
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 2.6e-112 409.8 334 62.9
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 9.8e-112 407.9 378 59.5
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 1.7e-108 397.1 256 74.6
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 9.5e-107 391.3 254 74.8
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 4.0e-105 386.0 364 58.0
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 4.9e-103 379.0 456 47.1
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 1.2e-98 364.4 377 50.9
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 2.1e-98 363.6 354 56.8
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.8e-98 363.2 427 52.0
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.7e-98 362.5 253 69.6
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 2.0e-96 357.1 400 51.0
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 2.1e-90 337.0 363 47.7
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 2.4e-89 333.6 246 67.9
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 3.8e-87 326.2 361 47.6
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 6.4e-87 325.5 358 48.0
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 8.7e-84 315.1 328 51.8
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 4.3e-83 312.8 318 57.2
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 1.4e-81 307.8 329 50.2
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 5.8e-72 275.8 453 40.8
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 6.7e-68 262.3 448 39.7
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 4.8e-50 203.0 235 51.5
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 2.4e-49 200.7 252 45.2
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 1.4e-46 191.4 193 55.4
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 2.1e-45 187.6 161 59.0
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 2.3e-44 184.1 259 46.3
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 4.1e-33 146.7 94 73.4
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 3.6e-29 133.7 122 58.2
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 8.8e-28 129.0 133 56.4
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 8.8e-28 129.0 458 27.1
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 2.8e-26 124.0 134 54.5
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 2.9e-23 114.0 201 39.3
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 2.9e-23 114.0 60 83.3
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.5e-22 111.7 125 48.0
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 8.0e-21 105.9 220 32.3
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 3.5e-16 90.5 73 65.8
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 1.0e-15 89.0 221 33.9
PGSC0003DMG401006600 Solanum tuberosum HOM05D032728 ORTHO05D007283 1.2e-08 65.5 54 57.4
SMO274G0013 Selaginella moellendorffii HOM05D005965 ORTHO05D376736 9.5e-06 55.8 120 37.5


User provided reference genes

Program Settings