Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 3.3e-275 951.0 465 100.0
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 6.0e-253 877.1 467 93.1
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 3.5e-245 851.3 467 91.4
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 2.3e-244 848.6 467 91.2
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.6e-237 825.9 467 89.7
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 7.7e-232 807.0 464 87.3
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 1.0e-207 726.9 467 77.1
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 5.2e-204 714.5 467 75.2
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 8.8e-204 713.8 464 75.4
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 1.3e-202 709.9 466 75.1
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 3.6e-197 691.8 465 73.8
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 4.7e-197 691.4 464 73.3
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 8.0e-197 690.6 463 73.7
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 4.0e-196 688.3 465 74.6
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 8.8e-196 687.2 463 73.2
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 1.5e-195 686.4 467 72.8
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 1.5e-195 686.4 467 72.4
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 3.4e-195 685.3 467 72.2
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 5.7e-195 684.5 464 73.1
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 5.7e-195 684.5 467 71.7
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 9.8e-195 683.7 463 72.8
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 1.3e-194 683.3 464 72.2
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 3.7e-194 681.8 464 71.8
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 6.3e-194 681.0 464 72.4
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 8.3e-194 680.6 467 71.5
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.1e-193 680.2 463 72.6
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 1.4e-193 679.9 466 71.9
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 1.8e-193 679.5 464 72.6
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 1.2e-192 676.8 464 71.1
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 2.7e-192 675.6 465 71.0
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 1.0e-191 673.7 464 70.0
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 1.0e-191 673.7 464 70.0
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 1.0e-191 673.7 466 71.0
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.0e-191 673.7 467 71.3
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 1.0e-191 673.7 466 71.2
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 1.7e-191 672.9 455 71.6
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 1.7e-191 672.9 467 70.0
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 5.0e-191 671.4 467 70.9
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 8.6e-191 670.6 463 71.1
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 1.9e-190 669.5 464 69.4
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 1.9e-190 669.5 463 69.1
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 2.5e-190 669.1 466 71.0
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 3.3e-190 668.7 466 70.4
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 4.2e-190 668.3 469 71.0
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 9.5e-190 667.2 464 70.9
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 2.1e-189 666.0 464 70.7
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 2.8e-189 665.6 467 71.1
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 8.0e-189 664.1 458 70.3
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 1.0e-188 663.7 466 70.6
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 1.0e-188 663.7 461 70.1
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 3.0e-188 662.1 455 70.5
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 4.0e-188 661.8 467 70.4
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 6.8e-188 661.0 466 68.9
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 8.9e-188 660.6 434 73.7
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 1.2e-187 660.2 466 70.4
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 1.2e-187 660.2 432 74.3
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 2.0e-187 659.4 464 69.4
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 4.4e-187 658.3 467 70.4
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 5.7e-187 657.9 455 69.9
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 9.8e-187 657.1 435 73.8
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 1.3e-186 656.8 462 69.9
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 2.9e-186 655.6 455 69.2
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 6.3e-186 654.4 470 69.1
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 6.3e-186 654.4 484 66.9
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 1.1e-185 653.7 419 75.2
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 1.4e-185 653.3 451 70.7
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 4.1e-185 651.7 466 68.9
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 4.1e-185 651.7 461 69.2
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 1.2e-184 650.2 464 70.0
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 2.9e-183 645.6 464 68.5
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 8.6e-183 644.0 436 71.6
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.1e-182 643.7 455 68.6
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 1.5e-182 643.3 465 68.8
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 2.5e-182 642.5 464 67.5
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 3.3e-182 642.1 424 72.9
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 4.3e-182 641.7 465 66.2
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 4.7e-181 638.3 430 71.6
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 6.1e-181 637.9 465 68.4
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 8.0e-181 637.5 452 70.1
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 2.3e-180 636.0 435 71.0
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 8.9e-180 634.0 467 67.5
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 2.0e-176 622.9 426 69.7
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 3.0e-175 619.0 455 65.9
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 4.3e-174 615.1 467 66.2
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 2.1e-173 612.8 430 70.2
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 2.1e-173 612.8 441 67.6
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 4.4e-171 605.1 478 64.9
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 1.9e-169 599.7 455 63.3
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 2.1e-168 596.3 408 71.6
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 1.1e-164 583.9 514 59.7
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 1.1e-164 583.9 455 62.2
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 3.1e-164 582.4 467 60.0
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 8.9e-164 580.9 459 62.1
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 3.2e-161 572.4 540 55.2
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 2.4e-156 556.2 369 74.8
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 5.2e-156 555.1 407 67.6
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 5.2e-156 555.1 504 56.5
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 1.7e-154 550.1 472 60.0
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 2.7e-152 542.7 385 67.3
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 2.3e-151 539.7 431 63.3
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 3.9e-151 538.9 483 58.2
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 5.1e-151 538.5 374 71.4
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 9.3e-145 517.7 474 56.5
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 9.3e-145 517.7 463 59.2
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 1.3e-143 513.8 469 54.6
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 5.1e-143 511.9 469 56.1
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 4.5e-139 498.8 493 55.4
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.4e-137 493.8 464 57.3
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 7.9e-136 488.0 462 53.5
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 4.8e-133 478.8 432 59.0
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 2.2e-130 469.9 443 53.0
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 2.6e-123 446.4 438 51.6
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 3.3e-118 429.5 460 49.3
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.4e-113 414.1 294 68.4
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 9.1e-108 394.8 256 72.7
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 3.9e-103 379.4 247 75.3
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 9.7e-94 348.2 406 43.3
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 2.5e-89 333.6 245 69.8
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 5.7e-86 322.4 311 55.3
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 9.8e-86 321.6 211 71.6
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 1.3e-85 321.2 210 71.4
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 3.1e-84 316.6 474 38.8
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 1.6e-83 314.3 521 35.7
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 1.9e-60 237.7 171 68.4
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 6.2e-56 222.6 175 60.0
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 8.9e-55 218.8 192 58.3
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 2.1e-43 181.0 194 50.0
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 1.3e-42 178.3 414 30.2
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 2.5e-41 174.1 151 58.3
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 3.6e-40 170.2 268 40.7
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 3.6e-40 170.2 108 66.7
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 2.4e-39 167.5 187 49.2
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 4.9e-37 159.8 162 52.5
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 1.6e-35 154.8 107 66.4
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.5e-33 148.3 132 52.3
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 1.8e-31 141.4 155 50.3
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 1.2e-30 138.7 96 64.6
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 9.9e-30 135.6 86 67.4
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 3.5e-27 127.1 135 51.9
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 4.6e-27 126.7 105 60.0
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 3.9e-26 123.6 125 52.0
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.2e-22 112.1 96 54.2
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 1.9e-20 104.8 136 45.6
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 7.4e-17 92.8 66 63.6
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 3.1e-15 87.4 77 63.6
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.3e-13 82.0 71 59.2
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 4.9e-13 80.1 73 63.0
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 2.5e-09 67.8 82 46.3
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 5.7e-09 66.6 43 69.8
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 4.1e-07 60.5 51 56.9
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 7.6e-06 56.2 40 65.0
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 1.0e-05 55.8 63 50.8
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 1.0e-05 55.8 63 50.8
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 1.0e-05 55.8 63 50.8


User provided reference genes

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