Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 7.9e-216 754.2 620 100.0
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 3.0e-175 619.4 620 87.6
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 6.7e-175 618.2 620 83.4
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 3.3e-174 615.9 620 78.5
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 4.1e-172 609.0 621 86.6
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 5.9e-171 605.1 621 86.3
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 5.9e-147 525.4 630 79.2
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 8.4e-93 345.5 646 51.2
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 4.1e-63 246.9 657 42.8
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 4.5e-62 243.4 589 48.9
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 2.3e-58 231.1 640 33.8
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 5.3e-55 219.9 600 32.8
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 1.6e-51 208.4 639 42.7
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.3e-48 198.7 640 33.1
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 2.2e-45 188.0 653 40.6
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 7.5e-41 172.9 591 36.5
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 7.5e-41 172.9 630 41.3
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 2.2e-40 171.4 619 29.1
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 3.7e-40 170.6 625 35.5
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 4.1e-39 167.2 619 29.1
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 4.5e-38 163.7 634 35.0
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 6.5e-37 159.8 684 35.8
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 1.5e-36 158.7 588 33.0
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 1.2e-35 155.6 768 38.0
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 8.0e-35 152.9 666 28.1
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 2.3e-34 151.4 663 25.9
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 2.3e-34 151.4 661 38.0
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 1.5e-33 148.7 630 33.3
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 2.0e-33 148.3 163 52.1
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 9.8e-33 146.0 631 34.7
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 4.9e-32 143.7 630 26.7
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 6.3e-32 143.3 601 30.6
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.1e-31 142.5 658 28.9
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 3.1e-31 141.0 588 25.2
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 5.4e-31 140.2 629 30.2
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 4.5e-30 137.1 597 31.2
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 5.0e-29 133.7 626 31.6
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 8.6e-29 132.9 655 31.8
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 1.1e-28 132.5 625 26.9
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.5e-28 132.1 655 31.8
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 3.3e-28 131.0 663 33.2
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 4.7e-27 127.1 631 27.7
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 1.0e-26 125.9 164 48.2
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 1.8e-26 125.2 643 24.3
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 3.0e-26 124.4 661 37.1
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 2.0e-25 121.7 599 23.5
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 2.6e-25 121.3 586 35.2
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 3.4e-25 120.9 624 31.4
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 3.4e-25 120.9 681 23.9
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.3e-24 119.0 590 35.8
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 2.9e-24 117.9 695 29.1
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.8e-23 115.2 588 34.5
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 1.8e-23 115.2 587 35.4
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 3.2e-23 114.4 274 34.7
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 4.1e-23 114.0 188 38.3
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 5.4e-23 113.6 218 38.5
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 7.8e-22 109.8 164 43.9
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 1.5e-20 105.5 225 34.7
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 1.9e-20 105.1 664 27.3
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 7.3e-20 103.2 163 42.9
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 2.8e-19 101.3 162 43.2
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 3.6e-19 100.9 632 32.9
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 3.6e-19 100.9 160 38.8
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 4.7e-19 100.5 633 27.0
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 6.2e-19 100.1 158 42.4
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 8.0e-19 99.8 623 28.9
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 8.0e-19 99.8 623 28.9
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 1.0e-18 99.4 763 25.3
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.4e-18 99.0 633 35.5
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 1.8e-18 98.6 583 27.4
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 1.8e-18 98.6 159 43.4
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 6.8e-18 96.7 642 27.4
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 6.8e-18 96.7 160 42.5
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 1.2e-17 95.9 200 35.0
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 2.0e-17 95.1 271 28.4
DCAR_029454 Daucus carota HOM05D004923 ORTHO05D005940 2.6e-17 94.7 640 36.2
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 3.4e-17 94.4 160 35.6
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 7.5e-17 93.2 586 29.0
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 2.2e-16 91.7 614 40.1
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 2.9e-16 91.3 650 22.5
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 3.7e-16 90.9 693 32.6
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 4.9e-16 90.5 144 34.7
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 6.4e-16 90.1 625 26.9
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.1e-15 89.4 624 33.8
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 1.4e-15 89.0 154 38.3
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 1.4e-15 89.0 138 40.6
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 2.4e-15 88.2 586 34.5
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 4.1e-15 87.4 636 33.2
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 9.2e-15 86.3 666 26.6
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 1.2e-14 85.9 586 35.0
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 2.0e-14 85.1 683 30.7
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 3.5e-14 84.3 137 38.7
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 4.6e-14 84.0 224 30.8
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 6.0e-14 83.6 209 36.4
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 7.8e-14 83.2 166 34.3
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 1.0e-13 82.8 586 43.9
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 1.0e-13 82.8 644 25.6
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 3.0e-13 81.3 665 32.8
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 8.6e-13 79.7 133 32.3
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.1e-12 79.3 761 23.9
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 1.5e-12 79.0 665 25.6
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 2.5e-12 78.2 203 33.0
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 3.3e-12 77.8 167 33.5
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 5.6e-12 77.0 160 36.2
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 5.6e-12 77.0 634 22.6
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 7.3e-12 76.6 246 31.3
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 1.2e-11 75.9 599 29.4
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 3.6e-11 74.3 123 40.7
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 6.2e-11 73.6 117 37.6
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 2.3e-10 71.6 151 29.8
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 2.3e-10 71.6 151 29.8
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.5e-09 68.9 225 27.6
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.5e-09 68.9 659 28.1
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 2.0e-09 68.6 673 28.5
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 2.6e-09 68.2 216 31.9
PSO151G0084 Papaver somniferum HOM05D004923 ORTHO05D005940 2.6e-09 68.2 153 33.3
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 3.4e-09 67.8 669 38.9
CAN.G65.101 Capsicum annuum HOM05D004923 ORTHO05D005940 4.4e-09 67.4 116 35.3
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 5.8e-09 67.0 116 41.4
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 7.5e-09 66.6 114 38.6
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 9.8e-09 66.2 161 26.7
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 9.8e-09 66.2 588 30.6
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 1.7e-08 65.5 144 31.2
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 2.9e-08 64.7 270 28.1
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 6.4e-08 63.5 606 19.5
Ah.04g159890 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.4e-07 62.4 78 43.6
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 1.4e-07 62.4 193 30.1
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 2.1e-06 58.5 148 34.5
QL01p001837 Quercus lobata HOM05D004923 ORTHO05D005940 7.8e-06 56.6 71 39.4


User provided reference genes

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