Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0166 Fragaria x ananassa HOM05D007430 ORTHO05D009322 2.1e-61 238.8 118 100.0
FAN09G2572 Fragaria x ananassa HOM05D007430 ORTHO05D009322 4.4e-43 177.9 99 90.9
FvH4_6g46430 Fragaria vesca HOM05D007430 ORTHO05D009322 7.5e-43 177.2 99 90.9
FAN14G5598 Fragaria x ananassa HOM05D007430 ORTHO05D009322 7.5e-43 177.2 99 90.9
FAN05G2487 Fragaria x ananassa HOM05D007430 ORTHO05D009322 5.4e-41 171.0 99 87.9
RcHm_v2.0_Chr2g0164961 Rosa chinensis HOM05D007430 ORTHO05D009322 4.6e-40 167.9 99 84.8
Lalb_Chr02g0158751 Lupinus albus HOM05D007430 ORTHO05D009322 4.6e-32 141.4 99 70.7
MD17G1065300 Malus domestica HOM05D007430 ORTHO05D009322 7.8e-32 140.6 99 71.7
Prupe.3G249500 Prunus persica HOM05D007430 ORTHO05D009322 3.9e-31 138.3 99 67.7
Ca_14394_v3 Cicer arietinum L. HOM05D007430 ORTHO05D009322 5.1e-31 137.9 99 67.7
QL02p065966 Quercus lobata HOM05D007430 ORTHO05D009322 6.6e-31 137.5 98 71.4
Eucgr.C00827 Eucalyptus grandis HOM05D007430 ORTHO05D009322 1.5e-30 136.3 99 64.6
Lj2g0026299 Lotus japonicus HOM05D007430 ORTHO05D009322 1.9e-30 136.0 99 66.7
Glyma.19G034200 Glycine max HOM05D007430 ORTHO05D009322 1.2e-29 133.3 99 61.6
Medtr6g015965 Medicago truncatula HOM05D007430 ORTHO05D009322 8.1e-29 130.6 99 64.6
TWI34G0957 Tripterygium wilfordii HOM05D007430 ORTHO05D009322 1.1e-28 130.2 99 67.7
Sabra17G0085900 Salix brachista HOM05D007430 ORTHO05D009322 3.1e-28 128.6 99 65.7
Thecc.04G105400 Theobroma cacao HOM05D007430 ORTHO05D009322 3.1e-28 128.6 99 65.7
arahy.Tifrunner.gnm1.ann1.LXP3AQ Arachis hypogaea HOM05D007430 ORTHO05D009322 4.0e-28 128.3 101 65.3
CiPaw.03G083500 Carya illinoinensis HOM05D007430 ORTHO05D009322 4.0e-28 128.3 98 66.3
TPR.G15952 Trifolium pratense HOM05D007430 ORTHO05D009322 4.0e-28 128.3 99 61.6
GSVIVG01037660001 Vitis vinifera HOM05D007430 ORTHO05D009322 4.0e-28 128.3 99 63.6
Potri.017G099600 Populus trichocarpa HOM05D007430 ORTHO05D009322 5.2e-28 127.9 99 64.6
arahy.Tifrunner.gnm1.ann1.T6F203 Arachis hypogaea HOM05D007430 ORTHO05D009322 8.9e-28 127.1 101 64.4
PGR004G1880 Punica granatum HOM05D007430 ORTHO05D009322 8.9e-28 127.1 99 64.6
Nn8g40106 Nelumbo nucifera HOM05D007430 ORTHO05D009322 2.0e-27 125.9 98 61.2
Duzib138G0563 Durio zibethinus HOM05D007430 ORTHO05D009322 2.6e-27 125.6 99 63.6
Dinv33859 Davidia involucrata HOM05D007430 ORTHO05D009322 5.8e-27 124.4 98 65.3
CsaV3_4G010120 Cucumis sativus L. HOM05D007430 ORTHO05D009322 3.8e-26 121.7 99 60.6
Manes.02G059000 Manihot esculenta HOM05D007430 ORTHO05D009322 4.9e-26 121.3 99 62.6
Gohir.D07G186800 Gossypium hirsutum HOM05D007430 ORTHO05D009322 6.4e-26 120.9 99 62.6
Gorai.001G207400 Gossypium raimondii HOM05D007430 ORTHO05D009322 6.4e-26 120.9 99 62.6
Phvul.004G042100 Phaseolus vulgaris HOM05D007430 ORTHO05D009322 1.1e-25 120.2 99 58.6
Gohir.A07G179900 Gossypium hirsutum HOM05D007430 ORTHO05D009322 1.4e-25 119.8 98 63.3
TAR371G1216 Trochodendron aralioides HOM05D007430 ORTHO05D009322 1.4e-25 119.8 99 60.6
VMungo0464G1827 Vigna mungo HOM05D007430 ORTHO05D009322 1.9e-25 119.4 99 56.6
PSO478G2979 Papaver somniferum HOM05D007430 ORTHO05D009322 2.4e-25 119.0 99 58.6
Sed0003360 Sechium edule HOM05D007430 ORTHO05D009322 2.4e-25 119.0 99 58.6
Aqoxy3G00539 Aquilegia oxysepala HOM05D007430 ORTHO05D009322 4.2e-25 118.2 98 57.1
Cpa.g.sc14.221 Carica papaya HOM05D007430 ORTHO05D009322 4.2e-25 118.2 107 58.9
Ciclev10013162m.g Citrus clementina HOM05D007430 ORTHO05D009322 5.4e-25 117.9 99 57.6
MBI16_g22331_MAGBIO Magnolia biondii HOM05D007430 ORTHO05D009322 9.3e-25 117.1 95 60.0
Phvul.004G041900 Phaseolus vulgaris HOM05D007430 ORTHO05D009322 9.3e-25 117.1 99 56.6
ClCG07G016000 Citrullus lanatus HOM05D007430 ORTHO05D009322 1.2e-24 116.7 99 58.6
PSO017G6770 Papaver somniferum HOM05D007430 ORTHO05D009322 1.6e-24 116.3 99 58.6
Atru.chr8.658 Acer truncatum HOM05D007430 ORTHO05D009322 2.1e-24 115.9 96 61.5
MELO3C032688.2 Cucumis melo HOM05D007430 ORTHO05D009322 3.5e-24 115.2 99 59.6
Duzib133G1191 Durio zibethinus HOM05D007430 ORTHO05D009322 6.0e-24 114.4 88 64.8
TAR629G2042 Trochodendron aralioides HOM05D007430 ORTHO05D009322 6.0e-24 114.4 99 55.6
CANSAT64G0392 Cannabis sativa HOM05D007430 ORTHO05D009322 2.3e-23 112.5 93 62.4
Os03g0414400 Oryza sativa ssp. japonica HOM05D007430 ORTHO05D009322 6.6e-23 110.9 99 48.5
EL10Ac8g20552 Beta vulgaris HOM05D007430 ORTHO05D009322 8.7e-23 110.5 100 57.0
Hma1.2p1_1502F.1_g287440 Hydrangea macrophylla HOM05D007430 ORTHO05D009322 1.5e-22 109.8 98 60.2
CSS0032789 Camellia sinensis var. sinensis HOM05D007430 ORTHO05D009322 7.3e-22 107.5 99 57.6
CSS0049466 Camellia sinensis var. sinensis HOM05D007430 ORTHO05D009322 7.3e-22 107.5 99 57.6
Sc10g0000620 Simmondsia chinensis HOM05D007430 ORTHO05D009322 9.6e-22 107.1 100 55.0
AUR62023164 Chenopodium quinoa HOM05D007430 ORTHO05D009322 1.6e-21 106.3 100 59.0
Actinidia36267 Actinidia chinensis HOM05D007430 ORTHO05D009322 4.8e-21 104.8 98 58.2
DCAR_003124 Daucus carota HOM05D007430 ORTHO05D009322 4.8e-21 104.8 98 56.1
MD09G1073800 Malus domestica HOM05D007430 ORTHO05D009322 6.2e-21 104.4 62 83.9
Hund13678 Selenicereus undatus HOM05D007430 ORTHO05D009322 6.2e-21 104.4 100 58.0
Cc01_g15140 Coffea canephora HOM05D007430 ORTHO05D009322 5.3e-20 101.3 98 55.1
ECA238G2295 Erigeron canadensis HOM05D007430 ORTHO05D009322 5.3e-20 101.3 99 51.5
HPP92_007986 Vanilla planifolia HOM05D007430 ORTHO05D009322 5.3e-20 101.3 99 53.5
Lsat_1_v5_gn_2_89680 Lactuca sativa HOM05D007430 ORTHO05D009322 9.0e-20 100.5 95 54.7
HanXRQChr14g0452451 Helianthus annuus HOM05D007430 ORTHO05D009322 1.2e-19 100.1 99 53.5
ATR0559G319 Amborella trichopoda HOM05D007430 ORTHO05D009322 1.5e-19 99.8 96 53.1
THA.LOC104820974 Tarenaya hassleriana HOM05D007430 ORTHO05D009322 1.5e-19 99.8 99 54.5
vmacro05615 Vaccinium macrocarpon HOM05D007430 ORTHO05D009322 1.5e-19 99.8 98 54.1
CDE09G0787 Ceratophyllum demersum HOM05D007430 ORTHO05D009322 2.0e-19 99.4 95 57.9
AUR62009486 Chenopodium quinoa HOM05D007430 ORTHO05D009322 5.8e-19 97.8 100 54.0
CAN.G854.12 Capsicum annuum HOM05D007430 ORTHO05D009322 9.9e-19 97.1 93 57.0
Aa31LG11G13770 Aethionema arabicum HOM05D007430 ORTHO05D009322 3.8e-18 95.1 99 51.5
Sopen07g024280 Solanum pennellii HOM05D007430 ORTHO05D009322 8.4e-18 94.0 96 56.2
PGSC0003DMG400006148 Solanum tuberosum HOM05D007430 ORTHO05D009322 8.4e-18 94.0 96 56.2
CARHR197520 Cardamine hirsuta HOM05D007430 ORTHO05D009322 1.4e-17 93.2 99 48.5
AL6G26650 Arabidopsis lyrata HOM05D007430 ORTHO05D009322 1.9e-17 92.8 99 48.5
AT5G15802 Arabidopsis thaliana HOM05D007430 ORTHO05D009322 1.9e-17 92.8 99 48.5
CDE02G4259 Ceratophyllum demersum HOM05D007430 ORTHO05D009322 3.2e-17 92.0 59 76.3
SGA_v2.0_scaffold148G36438 Striga asiatica HOM05D007430 ORTHO05D009322 4.2e-17 91.7 98 46.9
MSTRG.3403 Avicennia marina HOM05D007430 ORTHO05D009322 5.4e-17 91.3 99 51.5
Solyc07g047840.2 Solanum lycopersicum HOM05D007430 ORTHO05D009322 5.4e-17 91.3 98 52.0
Thhalv10015108m.g Eutrema salsugineum HOM05D007430 ORTHO05D009322 1.2e-16 90.1 100 49.0
Carub.0006s1396 Capsella rubella HOM05D007430 ORTHO05D009322 7.9e-16 87.4 96 43.8
Nitab4.5_0000441g0090 Nicotiana tabacum HOM05D007430 ORTHO05D009322 1.0e-15 87.0 61 67.2
Nitab4.5_0009877g0030 Nicotiana tabacum HOM05D007430 ORTHO05D009322 1.0e-15 87.0 61 67.2
Psat1g066840 Pisum sativum HOM05D007430 ORTHO05D009322 1.3e-15 86.7 67 65.7
C09p61270 Brassica napus HOM05D007430 ORTHO05D009322 1.8e-15 86.3 99 46.5
Oeu007080.1 Olea europaea HOM05D007430 ORTHO05D009322 1.8e-15 86.3 102 46.1
Migut.O00383 Erythranthe guttata HOM05D007430 ORTHO05D009322 3.0e-15 85.5 97 46.4
BcaC04g18935 Brassica carinata HOM05D007430 ORTHO05D009322 3.9e-15 85.1 71 57.7
BolC9t58969H Brassica oleracea HOM05D007430 ORTHO05D009322 3.9e-15 85.1 71 57.7
A10p23220 Brassica napus HOM05D007430 ORTHO05D009322 1.1e-14 83.6 71 56.3
BraA10t44390Z Brassica rapa HOM05D007430 ORTHO05D009322 1.1e-14 83.6 71 56.3
Sp6g28310 Schrenkiella parvula HOM05D007430 ORTHO05D009322 2.5e-14 82.4 96 42.7
SalBow1G0910 Salvia bowleyana HOM05D000293 ORTHO05D000180 5.6e-14 81.3 94 46.8
MBI16_g39931_MAGBIO Magnolia biondii HOM05D007430 ORTHO05D009322 9.6e-14 80.5 95 46.3
Duzib138G1572 Durio zibethinus HOM05D007430 ORTHO05D009322 4.8e-13 78.2 103 44.7
unitig_32.g10757 Utricularia gibba HOM05D000600 ORTHO05D000432 8.1e-13 77.4 62 56.5
SEGI_38988 Sequoiadendron giganteum HOM05D007430 ORTHO05D009322 3.1e-12 75.5 96 41.7
Mapoly0015s0072 Marchantia polymorpha HOM05D007430 ORTHO05D009322 7.6e-11 70.9 59 55.9
Pp3c7_870 Physcomitrium patens HOM05D007430 ORTHO05D009322 2.2e-10 69.3 67 47.8
COL.COLO4_08471 Corchorus olitorius HOM05D007430 ORTHO05D009322 6.4e-10 67.8 37 86.5
AagrBONN_evm.TU.Sc2ySwM_228.315 Anthoceros agrestis HOM05D007430 ORTHO05D009322 1.9e-09 66.2 58 53.4
Rhsim10G0056400 Rhododendron simsii HOM05D007430 ORTHO05D009322 1.1e-06 57.0 36 75.0


User provided reference genes

Program Settings