Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 5.7e-80 300.8 149 100.0
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 3.7e-63 245.0 146 86.3
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 7.0e-62 240.7 120 98.3
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 6.6e-44 181.0 102 88.2
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 3.4e-40 168.7 87 93.1
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 4.4e-40 168.3 103 78.6
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 5.8e-40 167.9 103 78.6
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 7.5e-40 167.5 87 88.5
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 1.3e-39 166.8 103 76.7
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.2e-39 166.0 106 73.6
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 2.2e-39 166.0 102 77.5
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.9e-39 164.9 106 73.6
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 4.9e-39 164.9 106 73.6
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 4.9e-39 164.9 106 73.6
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 8.3e-39 164.1 87 87.4
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 1.4e-38 163.3 87 85.1
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 1.4e-38 163.3 86 88.4
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 1.9e-38 162.9 87 85.1
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.9e-38 162.9 106 72.6
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 1.9e-38 162.9 106 73.6
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 3.2e-38 162.2 87 85.1
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 4.1e-38 161.8 84 86.9
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 4.1e-38 161.8 88 85.2
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 5.4e-38 161.4 103 73.8
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 5.4e-38 161.4 103 74.8
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 5.4e-38 161.4 86 86.0
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 7.1e-38 161.0 102 75.5
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 7.1e-38 161.0 84 85.7
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 1.2e-37 160.2 87 83.9
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 1.2e-37 160.2 87 85.1
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 1.6e-37 159.8 103 72.8
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 1.6e-37 159.8 86 86.0
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 2.1e-37 159.5 87 85.1
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 2.1e-37 159.5 87 85.1
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 2.1e-37 159.5 87 85.1
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 3.5e-37 158.7 103 73.8
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 4.6e-37 158.3 87 82.8
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 4.6e-37 158.3 103 72.8
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 4.6e-37 158.3 87 86.2
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 6.0e-37 157.9 103 71.8
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 6.0e-37 157.9 103 72.8
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 6.0e-37 157.9 86 86.0
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 6.0e-37 157.9 87 82.8
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 6.0e-37 157.9 90 81.1
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 7.8e-37 157.5 88 81.8
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 7.8e-37 157.5 87 81.6
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 7.8e-37 157.5 87 81.6
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 7.8e-37 157.5 87 83.9
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 1.0e-36 157.1 84 84.5
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 1.0e-36 157.1 84 84.5
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.0e-36 157.1 101 73.3
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.0e-36 157.1 88 80.7
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 1.3e-36 156.8 87 82.8
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 1.3e-36 156.8 119 65.5
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.3e-36 156.8 86 84.9
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 1.7e-36 156.4 89 80.9
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 1.7e-36 156.4 87 85.1
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 1.7e-36 156.4 84 85.7
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 2.3e-36 156.0 87 81.6
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 2.3e-36 156.0 87 83.9
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 2.3e-36 156.0 86 81.4
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.3e-36 156.0 86 86.0
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 2.3e-36 156.0 87 81.6
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 3.0e-36 155.6 87 81.6
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 3.0e-36 155.6 87 82.8
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.0e-36 155.6 106 69.8
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 3.0e-36 155.6 87 81.6
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 3.9e-36 155.2 87 82.8
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 3.9e-36 155.2 84 86.9
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 3.9e-36 155.2 86 84.9
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 5.1e-36 154.8 88 78.4
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 5.1e-36 154.8 87 83.9
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 5.1e-36 154.8 87 83.9
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 5.1e-36 154.8 84 85.7
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 6.6e-36 154.5 87 81.6
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 1.1e-35 153.7 84 84.5
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 1.1e-35 153.7 86 86.0
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 1.1e-35 153.7 86 79.1
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.1e-35 153.7 85 80.0
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 1.1e-35 153.7 85 83.5
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 1.5e-35 153.3 87 80.5
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 1.5e-35 153.3 86 86.0
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.9e-35 152.9 86 80.2
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 1.9e-35 152.9 86 80.2
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 2.5e-35 152.5 84 84.5
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 2.5e-35 152.5 84 84.5
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 2.5e-35 152.5 87 79.3
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 2.5e-35 152.5 87 82.8
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 3.3e-35 152.1 84 84.5
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 3.3e-35 152.1 83 86.7
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 4.3e-35 151.8 104 70.2
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 7.3e-35 151.0 84 83.3
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 7.3e-35 151.0 84 83.3
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 7.3e-35 151.0 113 62.8
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 1.6e-34 149.8 86 79.1
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 1.6e-34 149.8 84 81.0
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 2.1e-34 149.4 87 80.5
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 2.1e-34 149.4 83 84.3
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 2.1e-34 149.4 87 80.5
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 2.8e-34 149.1 83 83.1
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 6.2e-34 147.9 87 78.2
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 6.2e-34 147.9 87 78.2
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 1.4e-33 146.7 101 68.3
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 8.9e-33 144.1 86 77.9
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 2.2e-31 139.4 85 76.5
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.9e-31 139.0 86 70.9
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 3.8e-31 138.7 106 62.3
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 1.7e-28 129.8 91 67.0
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 2.4e-25 119.4 96 60.4
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 6.9e-25 117.9 79 64.6
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 6.9e-25 117.9 77 72.7
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 9.0e-25 117.5 75 76.0
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 9.0e-25 117.5 75 76.0
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 2.0e-24 116.3 60 88.3
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.0e-24 116.3 75 74.7
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 2.6e-24 115.9 75 73.3
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 3.4e-24 115.5 80 68.8
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.4e-24 115.2 80 70.0
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.7e-23 113.2 61 83.6
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 2.9e-23 112.5 80 68.8
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 4.3e-19 98.6 80 60.0
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 2.0e-16 89.7 75 62.7
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 8.4e-15 84.3 75 54.7
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 2.1e-13 79.7 82 51.2
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 6.0e-13 78.2 82 50.0
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 7.9e-13 77.8 91 49.5
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 2.3e-12 76.3 80 42.5
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 7.4e-11 71.2 37 83.8
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 1.4e-09 67.0 78 43.6
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 4.0e-09 65.5 37 78.4
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 2.9e-07 59.3 44 59.1
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.8e-07 58.9 29 82.8
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 8.4e-07 57.8 33 78.8
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 1.4e-06 57.0 45 57.8
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 3.2e-06 55.8 26 100.0


User provided reference genes

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