Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0132 Fragaria x ananassa HOM05D000370 ORTHO05D006313 1.3e-213 746.1 388 100.0
FAN02G1594 Fragaria x ananassa HOM05D000370 ORTHO05D006313 1.7e-213 745.7 387 100.0
FvH4_6g36420 Fragaria vesca HOM05D000370 ORTHO05D006313 1.8e-210 735.7 387 98.2
FAN14G2100 Fragaria x ananassa HOM05D000370 ORTHO05D006313 1.8e-210 735.7 387 98.2
FAN09G0130 Fragaria x ananassa HOM05D000370 ORTHO05D006313 6.4e-208 727.2 387 97.4
FAN05G4541 Fragaria x ananassa HOM05D000370 ORTHO05D006313 2.5e-204 715.3 387 96.9
RcHm_v2.0_Chr2g0148391 Rosa chinensis HOM05D000370 ORTHO05D006313 7.4e-188 660.6 387 90.2
Prupe.3G027500 Prunus persica HOM05D000370 ORTHO05D006313 4.7e-150 535.0 392 75.0
MD09G1169500 Malus domestica HOM05D000370 ORTHO05D006313 1.2e-148 530.4 392 74.5
MD17G1157700 Malus domestica HOM05D000370 ORTHO05D006313 8.3e-147 524.2 392 73.2
QL05p089080 Quercus lobata HOM05D000370 ORTHO05D006313 5.8e-124 448.4 392 65.8
Thecc.06G050400 Theobroma cacao HOM05D000370 ORTHO05D006313 2.1e-118 429.9 388 62.9
Duzib192G0552 Durio zibethinus HOM05D000370 ORTHO05D006313 1.8e-117 426.8 394 62.9
CiPaw.02G129400 Carya illinoinensis HOM05D000370 ORTHO05D006313 6.8e-117 424.9 399 63.4
QL08p018247 Quercus lobata HOM05D000370 ORTHO05D006313 6.8e-117 424.9 394 62.9
CiPaw.01G209200 Carya illinoinensis HOM05D000370 ORTHO05D006313 8.9e-117 424.5 394 62.9
TWI12G1236 Tripterygium wilfordii HOM05D000370 ORTHO05D006313 8.9e-117 424.5 393 62.3
CANSAT01G2135 Cannabis sativa HOM05D000370 ORTHO05D006313 2.9e-115 419.5 394 62.2
GSVIVG01029452001 Vitis vinifera HOM05D000370 ORTHO05D006313 4.6e-113 412.1 388 61.9
Gohir.A05G116100 Gossypium hirsutum HOM05D000370 ORTHO05D006313 2.3e-112 409.8 389 60.2
Gohir.D05G117000 Gossypium hirsutum HOM05D000370 ORTHO05D006313 3.9e-112 409.1 389 59.9
Gorai.009G121000 Gossypium raimondii HOM05D000370 ORTHO05D006313 1.9e-111 406.8 389 59.6
Potri.007G003900 Populus trichocarpa HOM05D000370 ORTHO05D006313 1.9e-111 406.8 396 59.3
TAR626G1046 Trochodendron aralioides HOM05D000370 ORTHO05D006313 4.3e-111 405.6 393 61.3
Duzib235G0455 Durio zibethinus HOM05D000370 ORTHO05D006313 1.6e-110 403.7 394 59.6
Dinv20314 Davidia involucrata HOM05D000370 ORTHO05D006313 1.8e-109 400.2 419 57.5
Sabra07G0002900 Salix brachista HOM05D000370 ORTHO05D006313 3.8e-107 392.5 385 59.5
Haze_16167 Corylus avellana HOM05D000370 ORTHO05D006313 3.3e-103 379.4 483 52.0
Atru.chr3.4086 Acer truncatum HOM05D000370 ORTHO05D006313 9.0e-101 371.3 399 56.9
TWI18G0896 Tripterygium wilfordii HOM05D000370 ORTHO05D006313 2.0e-100 370.2 393 56.5
Eucgr.F04059 Eucalyptus grandis HOM05D000370 ORTHO05D006313 2.4e-98 363.2 398 54.5
Manes.14G000500 Manihot esculenta HOM05D000370 ORTHO05D006313 2.4e-98 363.2 398 56.8
PGR102G3330 Punica granatum HOM05D000370 ORTHO05D006313 2.4e-98 363.2 399 54.9
Nn8g41277 Nelumbo nucifera HOM05D000370 ORTHO05D006313 2.1e-97 360.1 395 56.5
THA.LOC104822748 Tarenaya hassleriana HOM05D000370 ORTHO05D006313 2.3e-96 356.7 389 54.8
Sp3g11160 Schrenkiella parvula HOM05D000370 ORTHO05D006313 2.4e-90 336.7 343 58.3
Actinidia38821 Actinidia chinensis HOM05D000370 ORTHO05D006313 3.2e-90 336.3 334 59.6
AT3G13000 Arabidopsis thaliana HOM05D000370 ORTHO05D006313 9.3e-90 334.7 337 57.3
AL3G24720 Arabidopsis lyrata HOM05D000370 ORTHO05D006313 1.0e-88 331.3 343 56.6
Carub.0003s1234 Capsella rubella HOM05D000370 ORTHO05D006313 1.0e-88 331.3 343 56.0
CSS0048464 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D006313 1.6e-86 323.9 393 51.9
Aa31LG8G240 Aethionema arabicum HOM05D000370 ORTHO05D006313 3.7e-86 322.8 384 50.5
MELO3C019563.2 Cucumis melo HOM05D000370 ORTHO05D006313 2.4e-85 320.1 392 52.8
CsaV3_3G018040 Cucumis sativus L. HOM05D000370 ORTHO05D006313 2.0e-84 317.0 381 53.0
CARHR087550 Cardamine hirsuta HOM05D000370 ORTHO05D006313 2.6e-84 316.6 343 54.8
Sed0025802 Sechium edule HOM05D000370 ORTHO05D006313 7.6e-84 315.1 326 56.4
Sed0024696 Sechium edule HOM05D000370 ORTHO05D006313 6.4e-83 312.0 326 56.1
C03p46040 Brassica napus HOM05D000370 ORTHO05D006313 1.9e-82 310.5 355 53.2
BolC3t16876H Brassica oleracea HOM05D000370 ORTHO05D006313 1.9e-82 310.5 355 53.2
A03p37930 Brassica napus HOM05D000370 ORTHO05D006313 4.2e-82 309.3 354 53.1
BraA03t12947Z Brassica rapa HOM05D000370 ORTHO05D006313 7.1e-82 308.5 335 54.3
CSS0030510 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D006313 1.6e-81 307.4 386 50.8
ClCG05G010450 Citrullus lanatus HOM05D000370 ORTHO05D006313 1.3e-80 304.3 316 56.6
Thhalv10020358m.g Eutrema salsugineum HOM05D000370 ORTHO05D006313 5.1e-80 302.4 324 54.3
C05p54900 Brassica napus HOM05D000370 ORTHO05D006313 4.8e-78 295.8 344 55.5
BolC5t34160H Brassica oleracea HOM05D000370 ORTHO05D006313 4.8e-78 295.8 344 55.5
BraA05t22451Z Brassica rapa HOM05D000370 ORTHO05D006313 1.4e-77 294.3 343 55.1
A05p36500 Brassica napus HOM05D000370 ORTHO05D006313 6.5e-75 285.4 327 54.4
QL03p048719 Quercus lobata HOM05D000370 ORTHO05D006313 3.3e-71 273.1 155 85.8
BcaC05g29217 Brassica carinata HOM05D000370 ORTHO05D006313 2.9e-67 260.0 299 56.2
EL10Ac7g18106 Beta vulgaris HOM05D000370 ORTHO05D006313 2.5e-66 256.9 323 48.6
Ciclev10028485m.g Citrus clementina HOM05D000370 ORTHO05D006313 9.4e-66 255.0 202 66.3
Hund18552 Selenicereus undatus HOM05D000370 ORTHO05D006313 3.9e-64 249.6 324 47.2
MBI13_g09077_MAGBIO Magnolia biondii HOM05D000370 ORTHO05D006313 1.7e-62 244.2 363 46.0
Os06g0704100 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 4.1e-61 239.6 323 47.1
PSO063G1283 Papaver somniferum HOM05D000370 ORTHO05D006313 5.3e-61 239.2 401 42.1
AUR62001306 Chenopodium quinoa HOM05D000370 ORTHO05D006313 9.1e-61 238.4 382 44.0
PSO170G0708 Papaver somniferum HOM05D000370 ORTHO05D006313 1.2e-60 238.0 401 42.1
CDE04G3500 Ceratophyllum demersum HOM05D000370 ORTHO05D006313 2.6e-60 236.9 323 47.1
SEGI_40993 Sequoiadendron giganteum HOM05D000370 ORTHO05D006313 7.7e-60 235.3 371 43.7
Ah.08g218000 Amaranthus hybridus HOM05D000370 ORTHO05D006313 1.3e-59 234.6 323 46.4
AUR62025688 Chenopodium quinoa HOM05D000370 ORTHO05D006313 1.7e-59 234.2 381 43.3
BcaC05g29218 Brassica carinata HOM05D000370 ORTHO05D006313 2.2e-59 233.8 344 49.1
BcaB06g25494 Brassica carinata HOM05D000370 ORTHO05D006313 1.4e-58 231.1 325 48.6
ATR0626G124 Amborella trichopoda HOM05D000370 ORTHO05D006313 4.2e-58 229.6 326 47.5
Cpa.g.sc1036.2 Carica papaya HOM05D000370 ORTHO05D006313 2.1e-57 227.3 135 81.5
vmacro18723 Vaccinium macrocarpon HOM05D000370 ORTHO05D006313 3.6e-57 226.5 444 39.6
Hma1.2p1_1098F.1_g256740 Hydrangea macrophylla HOM05D000370 ORTHO05D006313 4.7e-57 226.1 157 72.6
Zm00001eb227220 Zea mays HOM05D000370 ORTHO05D006313 1.4e-56 224.6 321 47.0
Rhsim08G0252100 Rhododendron simsii HOM05D000370 ORTHO05D006313 2.3e-56 223.8 395 42.8
Aqoxy7G02562 Aquilegia oxysepala HOM05D000370 ORTHO05D006313 8.8e-56 221.9 393 41.2
Hma1.2p1_1517F.1_g288430 Hydrangea macrophylla HOM05D000370 ORTHO05D006313 2.0e-55 220.7 151 73.5
COL.COLO4_26817 Corchorus olitorius HOM05D000370 ORTHO05D006313 7.4e-55 218.8 340 46.2
GSVIVG01014994001 Vitis vinifera HOM05D000370 ORTHO05D006313 2.2e-54 217.2 328 46.0
HPP92_010810 Vanilla planifolia HOM05D000370 ORTHO05D006313 6.3e-54 215.7 330 44.8
Atru.chr7.1800 Acer truncatum HOM05D000370 ORTHO05D006313 5.9e-52 209.1 325 44.6
Sabra06G0167200 Salix brachista HOM05D000370 ORTHO05D006313 2.2e-51 207.2 325 46.2
Manes.03G054600 Manihot esculenta HOM05D000370 ORTHO05D006313 7.2e-50 202.2 371 39.4
Potri.006G216800 Populus trichocarpa HOM05D000370 ORTHO05D006313 3.6e-49 199.9 325 45.2
THA.LOC104812341 Tarenaya hassleriana HOM05D000370 ORTHO05D006313 6.1e-49 199.1 334 42.8
BcaB03g13033 Brassica carinata HOM05D000370 ORTHO05D006313 1.4e-48 198.0 325 40.9
AL1G28920 Arabidopsis lyrata HOM05D000370 ORTHO05D006313 6.7e-48 195.7 368 40.5
BcaC07g38812 Brassica carinata HOM05D000370 ORTHO05D006313 1.1e-47 194.9 325 40.9
A08p31290 Brassica napus HOM05D000370 ORTHO05D006313 1.1e-47 194.9 326 41.4
BraA08t35052Z Brassica rapa HOM05D000370 ORTHO05D006313 1.1e-47 194.9 326 41.4
Thhalv10007325m.g Eutrema salsugineum HOM05D000370 ORTHO05D006313 2.6e-47 193.7 327 41.9
AT1G16750 Arabidopsis thaliana HOM05D000370 ORTHO05D006313 3.3e-47 193.4 370 39.5
Sp1g14900 Schrenkiella parvula HOM05D000370 ORTHO05D006313 3.3e-47 193.4 327 41.3
CARHR017210 Cardamine hirsuta HOM05D000370 ORTHO05D006313 4.4e-47 193.0 333 39.9
C08p17540 Brassica napus HOM05D000370 ORTHO05D006313 3.7e-46 189.9 326 40.5
BolC8t49380H Brassica oleracea HOM05D000370 ORTHO05D006313 3.7e-46 189.9 326 40.5
Carub.0001s1649 Capsella rubella HOM05D000370 ORTHO05D006313 4.1e-45 186.4 332 39.2
Aa31LG7G1210 Aethionema arabicum HOM05D000370 ORTHO05D006313 9.1e-45 185.3 332 38.6
Thecc.09G067700 Theobroma cacao HOM05D000370 ORTHO05D006313 1.0e-40 171.8 325 41.5
QL03p048724 Quercus lobata HOM05D000370 ORTHO05D011368 2.6e-39 167.2 205 54.6
Zm00001eb225950 Zea mays HOM05D000370 ORTHO05D006313 3.4e-39 166.8 341 36.4
Duzib187G1680 Durio zibethinus HOM05D000370 ORTHO05D006313 9.8e-39 165.2 325 40.6
Zm00001eb273360 Zea mays HOM05D000370 ORTHO05D006313 2.8e-38 163.7 326 35.9
Eucgr.C00757 Eucalyptus grandis HOM05D000370 ORTHO05D006313 4.8e-38 162.9 326 40.2
Zm00001eb232490 Zea mays HOM05D000370 ORTHO05D006313 6.3e-38 162.5 350 38.6
Gohir.A05G037200 Gossypium hirsutum HOM05D000370 ORTHO05D006313 1.1e-37 161.8 360 38.6
Gohir.A07G018100 Gossypium hirsutum HOM05D000370 ORTHO05D006313 1.4e-37 161.4 373 38.1
Gohir.D05G038700 Gossypium hirsutum HOM05D000370 ORTHO05D006313 1.8e-37 161.0 360 38.3
Gorai.001G018600 Gossypium raimondii HOM05D000370 ORTHO05D006313 5.4e-37 159.5 373 37.8
Duzib168G0938 Durio zibethinus HOM05D000370 ORTHO05D006313 9.1e-37 158.7 371 39.4
Gorai.009G039200 Gossypium raimondii HOM05D000370 ORTHO05D006313 9.1e-37 158.7 360 38.1
COL.COLO4_21180 Corchorus olitorius HOM05D000370 ORTHO05D006313 1.3e-35 154.8 317 40.1
Gohir.D07G017900 Gossypium hirsutum HOM05D000370 ORTHO05D006313 1.5e-34 151.4 391 35.3
Hma1.2p1_0145F.1_g065150 Hydrangea macrophylla HOM05D000370 ORTHO05D006313 1.9e-34 151.0 118 66.1
RcHm_v2.0_Chr1g0315561 Rosa chinensis HOM05D000370 ORTHO05D011368 2.7e-33 147.1 145 63.4
HPP92_027162 Vanilla planifolia HOM05D000370 ORTHO05D006313 4.4e-31 139.8 368 32.3
Os06g0692800 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 9.8e-31 138.7 386 34.5
SHI27952 Sapria himalayana HOM05D000370 ORTHO05D006313 4.1e-29 133.3 388 31.2
Cpa.g.sc82.38 Carica papaya HOM05D000370 ORTHO05D006313 1.2e-28 131.7 169 45.6
Os02g0153000 Oryza sativa ssp. japonica HOM05D000370 ORTHO05D006313 6.1e-25 119.4 137 50.4
Mapoly0019s0124 Marchantia polymorpha HOM05D000370 ORTHO05D006313 1.0e-24 118.6 127 52.0
Ciclev10010408m.g Citrus clementina HOM05D000370 ORTHO05D006313 1.5e-23 114.8 134 53.0
MBI13_g08746_MAGBIO Magnolia biondii HOM05D001253 ORTHO05D001086 7.5e-23 112.5 65 80.0
Sabra15G0073500 Salix brachista HOM05D011012 ORTHO05D011368 1.0e-19 102.1 230 37.8
Pp3c2_7590 Physcomitrium patens HOM05D000370 ORTHO05D006313 1.7e-19 101.3 125 47.2
Pp3c2_7596 Physcomitrium patens HOM05D000370 ORTHO05D006313 1.7e-19 101.3 125 47.2
MBI05_g10672_MAGBIO Magnolia biondii HOM05D000370 ORTHO05D006313 2.9e-19 100.5 63 74.6
SMO361G0174 Selaginella moellendorffii HOM05D000370 ORTHO05D006313 5.0e-19 99.8 127 44.1
Pp3c3_3580 Physcomitrium patens HOM05D000370 ORTHO05D006313 6.6e-19 99.4 196 37.8
RcHm_v2.0_Chr1g0315101 Rosa chinensis HOM05D000370 ORTHO05D348762 6.6e-19 99.4 64 82.8
ATR0006G062 Amborella trichopoda HOM05D000370 ORTHO05D006313 1.9e-18 97.8 102 56.9
THA.LOC104803715 Tarenaya hassleriana HOM05D011012 ORTHO05D011368 5.6e-18 96.3 130 46.9
SMO270G0082 Selaginella moellendorffii HOM05D000370 ORTHO05D006313 1.2e-17 95.1 123 44.7
Pp3c26_11890 Physcomitrium patens HOM05D000370 ORTHO05D006313 2.1e-17 94.4 126 46.0
Pp3c1_28560 Physcomitrium patens HOM05D000370 ORTHO05D006313 3.6e-17 93.6 513 26.3
Carub.0007s0733 Capsella rubella HOM05D011012 ORTHO05D011368 8.0e-17 92.4 103 54.4
Thhalv10027222m.g Eutrema salsugineum HOM05D011012 ORTHO05D011368 8.0e-17 92.4 103 54.4
Sp7g30870 Schrenkiella parvula HOM05D011012 ORTHO05D011368 1.4e-16 91.7 103 53.4
A01p05080 Brassica napus HOM05D011012 ORTHO05D011368 2.3e-16 90.9 112 51.8
BraA01t00490Z Brassica rapa HOM05D011012 ORTHO05D011368 2.3e-16 90.9 103 53.4
AT4G33130 Arabidopsis thaliana HOM05D011012 ORTHO05D011368 3.1e-16 90.5 103 52.4
AL7G18440 Arabidopsis lyrata HOM05D011012 ORTHO05D011368 4.0e-16 90.1 103 52.4
CARHR241150 Cardamine hirsuta HOM05D011012 ORTHO05D011368 5.2e-16 89.7 99 55.6
Pp3c14_19250 Physcomitrium patens HOM05D000370 ORTHO05D006313 6.8e-16 89.4 127 44.1
BcaC09g52116 Brassica carinata HOM05D011012 ORTHO05D011368 1.2e-15 88.6 112 50.9
BolC1t00535H Brassica oleracea HOM05D011012 ORTHO05D011368 1.2e-15 88.6 103 52.4
C01p05550 Brassica napus HOM05D011012 ORTHO05D011368 1.5e-15 88.2 112 50.9
CARHR151380 Cardamine hirsuta HOM05D000370 ORTHO05D011368 1.5e-15 88.2 83 56.6
Pp3c17_15980 Physcomitrium patens HOM05D000370 ORTHO05D006313 2.6e-15 87.4 249 32.1
Pp3c13_8290 Physcomitrium patens HOM05D000370 ORTHO05D006313 4.9e-14 83.2 185 35.7
RcHm_v2.0_Chr1g0322971 Rosa chinensis HOM05D000370 ORTHO05D341757 3.2e-13 80.5 46 89.1
Atru.chr3.3771 Acer truncatum HOM05D000080 ORTHO05D004954 2.7e-12 77.4 92 50.0
ATR0006G027 Amborella trichopoda HOM05D011012 ORTHO05D011368 3.9e-11 73.6 93 49.5
Ciclev10010792m.g Citrus clementina HOM05D011012 ORTHO05D011368 8.6e-11 72.4 150 38.0
Mapoly0002s0089 Marchantia polymorpha HOM05D000370 ORTHO05D001335 4.4e-07 60.1 126 37.3
MBI04_g46577_MAGBIO Magnolia biondii HOM05D000370 ORTHO05D001335 1.7e-06 58.2 378 27.0
SMO270G0126 Selaginella moellendorffii HOM05D000370 ORTHO05D001335 2.2e-06 57.8 331 27.5
MBI16_g27941_MAGBIO Magnolia biondii HOM05D011012 ORTHO05D011368 2.9e-06 57.4 63 55.6
SEGI_24322 Sequoiadendron giganteum HOM05D000370 ORTHO05D007301 2.9e-06 57.4 373 26.3
Cc02_g07740 Coffea canephora HOM05D000370 ORTHO05D001366 8.3e-06 55.8 333 24.0


User provided reference genes

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