Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.4e-292 1008.8 507 100.0
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 4.2e-276 954.1 563 87.6
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.2e-265 919.5 563 85.3
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 5.0e-253 877.5 486 92.4
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 2.9e-240 835.1 486 88.1
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.2e-238 829.7 510 85.3
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 2.1e-182 642.9 487 68.0
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 4.6e-182 641.7 478 67.8
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 4.1e-178 628.6 480 65.8
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 2.6e-177 625.9 482 66.0
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 8.5e-176 620.9 459 69.1
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 7.9e-174 614.4 511 62.6
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.4e-170 602.8 484 62.8
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 4.1e-170 602.1 428 68.5
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 1.5e-169 600.1 418 70.8
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 2.6e-169 599.4 472 64.0
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 6.5e-168 594.7 479 63.5
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 6.5e-168 594.7 480 63.3
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 1.1e-167 594.0 472 63.8
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 1.1e-167 594.0 438 67.1
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 7.2e-167 591.3 471 61.8
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 9.4e-167 590.9 477 63.5
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 1.6e-166 590.1 472 63.6
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 3.6e-166 589.0 481 62.4
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 4.7e-166 588.6 429 69.5
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 1.0e-165 587.4 478 63.4
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.4e-165 587.0 479 62.8
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 1.8e-165 586.6 512 59.4
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 2.3e-165 586.3 479 61.2
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 3.0e-165 585.9 485 62.1
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 3.9e-165 585.5 424 68.4
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 1.1e-164 583.9 478 61.7
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 2.6e-164 582.8 444 66.4
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 5.7e-164 581.6 427 67.9
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 7.4e-164 581.3 472 63.1
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 4.1e-162 575.5 479 63.9
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 9.1e-162 574.3 458 63.8
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 1.2e-161 573.9 417 67.9
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 1.6e-161 573.5 449 65.0
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 4.5e-161 572.0 435 65.5
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 7.7e-161 571.2 424 66.0
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 1.0e-160 570.9 453 64.0
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 1.3e-160 570.5 425 65.9
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 2.2e-160 569.7 426 66.2
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 8.5e-160 567.8 413 68.5
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 1.5e-159 567.0 417 67.1
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 4.2e-159 565.5 418 67.2
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 7.2e-159 564.7 371 78.7
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 1.2e-158 563.9 446 63.0
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 6.1e-158 561.6 435 66.0
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 1.8e-157 560.1 439 64.5
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 1.5e-156 557.0 422 63.5
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 3.4e-156 555.8 450 62.0
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 2.2e-155 553.1 445 62.2
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 2.8e-155 552.7 417 66.7
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 2.8e-155 552.7 445 61.3
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 4.8e-155 552.0 414 65.9
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 4.1e-154 548.9 414 65.0
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 2.0e-153 546.6 424 63.0
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 4.5e-153 545.4 452 64.2
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 4.5e-153 545.4 487 59.8
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 1.3e-152 543.9 445 62.7
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 2.2e-152 543.1 449 62.4
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 1.1e-151 540.8 526 55.9
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 4.2e-151 538.9 453 59.8
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 5.5e-151 538.5 404 66.1
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 4.7e-150 535.4 442 62.7
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 2.3e-149 533.1 456 59.2
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 8.8e-149 531.2 457 59.7
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 8.8e-149 531.2 459 59.7
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 1.5e-148 530.4 487 58.3
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 2.0e-148 530.0 428 61.4
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 4.9e-147 525.4 484 55.0
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 1.1e-146 524.2 453 59.4
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 4.1e-146 522.3 454 61.7
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 7.0e-146 521.5 492 55.7
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 2.0e-145 520.0 426 58.7
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 2.7e-145 519.6 508 55.1
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 3.8e-144 515.8 459 59.0
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 2.5e-143 513.1 409 61.9
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 8.9e-141 504.6 452 58.4
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 1.0e-136 491.1 377 64.5
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 8.6e-136 488.0 568 48.6
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 2.5e-135 486.5 408 61.5
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 5.2e-133 478.8 348 69.5
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 2.6e-132 476.5 421 57.7
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 6.4e-131 471.9 348 68.7
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 1.6e-129 467.2 404 58.2
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.5e-127 460.7 438 55.0
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 4.7e-126 455.7 402 57.7
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 3.4e-124 449.5 404 56.2
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 1.4e-122 444.1 472 52.3
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 3.5e-121 439.5 418 51.7
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 3.1e-117 426.4 425 50.1
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 1.4e-114 417.5 411 50.6
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 3.6e-110 402.9 324 62.0
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 4.0e-109 399.4 460 44.6
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 8.7e-104 381.7 300 66.0
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 4.4e-100 369.4 261 71.6
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 8.4e-99 365.2 307 63.5
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 4.8e-94 349.4 443 44.5
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 1.9e-87 327.4 284 59.9
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.6e-76 290.4 249 59.8
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 1.7e-75 287.7 191 71.7
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 5.7e-71 272.7 184 71.2
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 1.5e-68 264.6 271 55.7
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 1.1e-66 258.5 310 45.2
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 3.9e-64 250.0 180 66.7
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 1.0e-59 235.3 192 61.5
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 2.4e-45 187.6 128 70.3
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 6.5e-43 179.5 235 43.4
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 8.0e-41 172.6 138 58.0
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 9.8e-39 165.6 121 62.8
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 2.2e-38 164.5 157 53.5
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 1.5e-34 151.8 209 41.1
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 2.5e-34 151.0 134 58.2
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 2.0e-31 141.4 87 65.5
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 2.7e-28 131.0 111 56.8
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 8.6e-27 125.9 149 49.7
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 3.3e-26 124.0 488 28.1
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 8.0e-25 119.4 60 98.3
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 1.5e-23 115.2 103 54.4
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.1e-21 109.0 134 42.5
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.7e-20 104.4 50 100.0
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 4.6e-20 103.6 96 53.1
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 1.8e-16 91.7 165 36.4
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 4.4e-15 87.0 77 53.2
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 2.9e-14 84.3 109 43.1
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 8.3e-14 82.8 53 66.0
FAN01G1046 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.7e-11 75.1 41 90.2
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 5.0e-11 73.6 278 24.5
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 1.6e-09 68.6 54 50.0
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 4.7e-09 67.0 54 48.1
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 4.0e-08 63.9 34 88.2
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 2.6e-07 61.2 34 82.4
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 2.9e-06 57.8 105 34.3


User provided reference genes

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