Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0030 Fragaria x ananassa HOM05D003535 ORTHO05D046639 1.4e-153 546.2 274 100.0
FAN02G2062 Fragaria x ananassa HOM05D003535 ORTHO05D046639 1.4e-153 546.2 274 100.0
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 9.5e-89 330.9 249 73.9
FvH4_6g50070 Fragaria vesca HOM05D003535 ORTHO05D003986 1.2e-86 323.9 256 71.9
RcHm_v2.0_Chr2g0170341 Rosa chinensis HOM05D003535 ORTHO05D003986 2.3e-82 309.7 258 68.6
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.9e-82 308.9 265 68.3
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.9e-82 308.9 265 68.3
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 3.4e-70 269.2 256 63.7
Prupe.3G278600 Prunus persica HOM05D003535 ORTHO05D003986 4.1e-68 262.3 249 59.4
MD17G1040400 Malus domestica HOM05D003535 ORTHO05D003986 1.6e-59 233.8 251 57.4
FvH4_6g19600 Fragaria vesca HOM05D003535 ORTHO05D003986 7.9e-35 151.8 79 96.2
FvH4_6g19601 Fragaria vesca HOM05D003535 ORTHO05D003986 8.2e-32 141.7 149 57.0
Nn4g22912 Nelumbo nucifera HOM05D003535 ORTHO05D003986 3.8e-21 106.3 261 33.0
Haze_14626 Corylus avellana HOM05D003535 ORTHO05D003986 6.1e-19 99.0 252 37.3
TAR629G0129 Trochodendron aralioides HOM05D003535 ORTHO05D003986 5.1e-18 95.9 265 34.3
Ciclev10012366m.g Citrus clementina HOM05D003535 ORTHO05D003986 1.5e-17 94.4 226 34.5
Nn3g17007 Nelumbo nucifera HOM05D003535 ORTHO05D003986 1.7e-16 90.9 259 32.4
Dinv33673 Davidia involucrata HOM05D003535 ORTHO05D003986 6.3e-16 89.0 255 32.2
MBI14_g12776_MAGBIO Magnolia biondii HOM05D003535 ORTHO05D003986 6.3e-16 89.0 251 29.5
Cfa007471 Carpinus fangiana HOM05D003535 ORTHO05D003986 1.1e-15 88.2 252 34.9
Sed0009689 Sechium edule HOM05D003535 ORTHO05D003986 2.4e-15 87.0 224 34.8
TAR622G1103 Trochodendron aralioides HOM05D003535 ORTHO05D003986 6.9e-15 85.5 233 30.0
MD16G1085300 Malus domestica HOM05D003535 ORTHO05D003986 9.1e-15 85.1 262 32.1
CiPaw.04G022500 Carya illinoinensis HOM05D003535 ORTHO05D003986 1.5e-14 84.3 247 32.0
QL02p078163 Quercus lobata HOM05D003535 ORTHO05D003986 2.6e-14 83.6 248 34.3
QL93p0205_0149 Quercus lobata HOM05D003535 ORTHO05D003986 2.6e-14 83.6 248 34.3
VMungo1215G1093 Vigna mungo HOM05D003535 ORTHO05D003986 8.5e-13 78.6 261 31.4
Hma1.2p1_1975F.1_g309720 Hydrangea macrophylla HOM05D003535 ORTHO05D003986 2.5e-12 77.0 251 29.9
Phvul.002G076000 Phaseolus vulgaris HOM05D003535 ORTHO05D003986 2.5e-12 77.0 262 30.9
Thecc.02G240800 Theobroma cacao HOM05D003535 ORTHO05D003986 3.2e-12 76.6 299 30.4
Cfa009095 Carpinus fangiana HOM05D003535 ORTHO05D003986 4.2e-12 76.3 261 32.6
Manes.01G195800 Manihot esculenta HOM05D003535 ORTHO05D003986 5.5e-12 75.9 264 31.4
Gohir.D12G147100 Gossypium hirsutum HOM05D003535 ORTHO05D003986 7.2e-12 75.5 270 30.0
GSVIVG01007821001 Vitis vinifera HOM05D003535 ORTHO05D003986 9.4e-12 75.1 247 28.7
Gorai.008G158300 Gossypium raimondii HOM05D003535 ORTHO05D003986 1.2e-11 74.7 271 30.3
Sc20g0002750 Simmondsia chinensis HOM05D003535 ORTHO05D003986 1.2e-11 74.7 245 30.2
Glyma.02G029300 Glycine max HOM05D003535 ORTHO05D003986 1.6e-11 74.3 263 30.4
Duzib251G0917 Durio zibethinus HOM05D003535 ORTHO05D003986 2.1e-11 73.9 267 28.8
Eucgr.K02879 Eucalyptus grandis HOM05D003535 ORTHO05D003986 2.1e-11 73.9 244 28.7
PSO161G0011 Papaver somniferum HOM05D003535 ORTHO05D003986 2.7e-11 73.6 256 28.9
arahy.Tifrunner.gnm1.ann1.Y99B41 Arachis hypogaea HOM05D003535 ORTHO05D003986 4.7e-11 72.8 262 31.3
Lj2g0022595 Lotus japonicus HOM05D003535 ORTHO05D003986 7.9e-11 72.0 264 30.7
GSVIVG01020154001 Vitis vinifera HOM05D003535 ORTHO05D003986 7.9e-11 72.0 261 30.3
Ciclev10032090m.g Citrus clementina HOM05D003535 ORTHO05D003986 1.8e-10 70.9 258 30.6
Lju41A30T60 Lonicera japonica HOM05D003535 ORTHO05D003986 1.8e-10 70.9 247 27.9
Duzib251G0037 Durio zibethinus HOM05D003535 ORTHO05D003986 2.3e-10 70.5 268 29.9
FvH4_4g35140 Fragaria vesca HOM05D003535 ORTHO05D003986 3.0e-10 70.1 297 27.9
Gohir.A12G142200 Gossypium hirsutum HOM05D003535 ORTHO05D003986 3.0e-10 70.1 270 29.3
Lalb_Chr16g0382501 Lupinus albus HOM05D003535 ORTHO05D003986 3.0e-10 70.1 263 30.4
Potri.010G036500 Populus trichocarpa HOM05D003535 ORTHO05D003986 3.0e-10 70.1 256 28.1
CSS0038696 Camellia sinensis var. sinensis HOM05D003535 ORTHO05D003986 3.9e-10 69.7 254 31.9
Ca_18085_v3 Cicer arietinum L. HOM05D003535 ORTHO05D003986 3.9e-10 69.7 264 31.4
TPR.G13941 Trifolium pratense HOM05D003535 ORTHO05D003986 3.9e-10 69.7 297 29.0
CsaV3_5G037470 Cucumis sativus L. HOM05D003535 ORTHO05D003986 6.7e-10 68.9 225 31.1
PSO478G4390 Papaver somniferum HOM05D003535 ORTHO05D003986 6.7e-10 68.9 261 27.6
Prupe.1G260800 Prunus persica HOM05D003535 ORTHO05D003986 8.8e-10 68.6 262 29.4
arahy.Tifrunner.gnm1.ann1.FE2K59 Arachis hypogaea HOM05D003535 ORTHO05D003986 1.1e-09 68.2 276 30.4
FAN07G1389 Fragaria x ananassa HOM05D003535 ORTHO05D003986 1.1e-09 68.2 299 27.8
CsaV3_5G025420 Cucumis sativus L. HOM05D003535 ORTHO05D003986 1.5e-09 67.8 296 28.0
Psat2g113240 Pisum sativum HOM05D003535 ORTHO05D003986 2.0e-09 67.4 264 29.5
Potri.008G193300 Populus trichocarpa HOM05D003535 ORTHO05D003986 2.0e-09 67.4 267 28.1
Atru.chr11.1948 Acer truncatum HOM05D003535 ORTHO05D003986 2.6e-09 67.0 258 31.8
CiPaw.05G145800 Carya illinoinensis HOM05D003535 ORTHO05D003986 3.3e-09 66.6 266 29.3
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 4.4e-09 66.2 202 30.7
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 4.4e-09 66.2 202 30.7
Eucgr.B02565 Eucalyptus grandis HOM05D003535 ORTHO05D003986 4.4e-09 66.2 257 31.1
FAN12G2559 Fragaria x ananassa HOM05D003535 ORTHO05D003986 4.4e-09 66.2 318 27.0
Aqoxy3G00881 Aquilegia oxysepala HOM05D003535 ORTHO05D003986 5.7e-09 65.9 304 28.6
Glyma.01G036700 Glycine max HOM05D003535 ORTHO05D003986 5.7e-09 65.9 263 30.0
Gohir.A04G098600 Gossypium hirsutum HOM05D003535 ORTHO05D003986 5.7e-09 65.9 273 28.6
Gohir.D04G138200 Gossypium hirsutum HOM05D003535 ORTHO05D003986 5.7e-09 65.9 273 28.6
MELO3C002939.2 Cucumis melo HOM05D003535 ORTHO05D003986 9.7e-09 65.1 297 27.3
Gorai.012G123100 Gossypium raimondii HOM05D003535 ORTHO05D003986 9.7e-09 65.1 273 28.6
Manes.05G092900 Manihot esculenta HOM05D003535 ORTHO05D003986 1.7e-08 64.3 264 29.2
MELO3C021511.2 Cucumis melo HOM05D003535 ORTHO05D003986 2.2e-08 63.9 203 31.0
Cpa.g.sc14.83 Carica papaya HOM05D003535 ORTHO05D003986 1.4e-07 61.2 259 29.7
MD13G1085900 Malus domestica HOM05D003535 ORTHO05D003986 1.4e-07 61.2 260 27.3
Sabra10G0028600 Salix brachista HOM05D003535 ORTHO05D003986 1.4e-07 61.2 265 27.2
Duzib248G0495 Durio zibethinus HOM05D003535 ORTHO05D003986 2.4e-07 60.5 300 28.0
Haze_12127 Corylus avellana HOM05D003535 ORTHO05D003986 3.1e-07 60.1 297 27.6
PGR119G2209 Punica granatum HOM05D003535 ORTHO05D003986 4.1e-07 59.7 259 29.0
Sed0012956 Sechium edule HOM05D003535 ORTHO05D003986 9.1e-07 58.5 270 25.9
ClCG09G022140 Citrullus lanatus HOM05D003535 ORTHO05D003986 1.2e-06 58.2 326 25.8
Zm00001eb424450 Zea mays HOM05D003535 ORTHO05D003986 1.5e-06 57.8 121 36.4
QL03p067125 Quercus lobata HOM05D003535 ORTHO05D003986 4.5e-06 56.2 284 26.4
arahy.Tifrunner.gnm1.ann1.KT3LL4 Arachis hypogaea HOM05D003535 ORTHO05D003986 7.7e-06 55.5 271 29.5
TWI36G0475 Tripterygium wilfordii HOM05D003535 ORTHO05D003986 7.7e-06 55.5 279 25.8


User provided reference genes

Program Settings