Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G3175 Fragaria x ananassa HOM05D007188 ORTHO05D009102 4.6e-115 417.9 215 100.0
FAN03G0393 Fragaria x ananassa HOM05D007188 ORTHO05D009102 2.2e-109 399.1 215 96.3
FAN06G0953 Fragaria x ananassa HOM05D007188 ORTHO05D009102 7.2e-108 394.0 215 94.9
FAN06G2123 Fragaria x ananassa HOM05D007188 ORTHO05D009102 7.2e-108 394.0 215 94.9
FAN10G2630 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.6e-107 392.9 215 94.4
RcHm_v2.0_Chr1g0362491 Rosa chinensis HOM05D007188 ORTHO05D009102 1.4e-95 353.2 210 89.0
MD01G1102700 Malus domestica HOM05D007188 ORTHO05D009102 4.8e-72 275.0 214 71.0
Sabra08G0023300 Salix brachista HOM05D007188 ORTHO05D009102 1.6e-67 260.0 203 67.5
Potri.008G034900 Populus trichocarpa HOM05D007188 ORTHO05D009102 4.7e-67 258.5 204 67.2
FvH4_7g18710 Fragaria vesca HOM05D007188 ORTHO05D009102 6.3e-64 248.1 141 91.5
QL08p054189 Quercus lobata HOM05D007188 ORTHO05D009102 1.6e-62 243.4 210 63.3
GSVIVG01016213001 Vitis vinifera HOM05D007188 ORTHO05D009102 1.6e-62 243.4 211 62.6
Manes.07G133140 Manihot esculenta HOM05D007188 ORTHO05D009102 7.7e-62 241.1 211 61.1
CSS0007320 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 6.6e-61 238.0 181 65.7
CSS0035829 Camellia sinensis var. sinensis HOM05D007188 ORTHO05D009102 8.6e-61 237.7 181 65.2
Cc02_g10880 Coffea canephora HOM05D007188 ORTHO05D009102 1.5e-60 236.9 178 66.9
CANSAT56G0643 Cannabis sativa HOM05D007188 ORTHO05D009102 3.3e-60 235.7 209 61.7
Cfa001805 Carpinus fangiana HOM05D007188 ORTHO05D009102 4.3e-60 235.3 208 62.0
Duzib106G0123 Durio zibethinus HOM05D007188 ORTHO05D009102 9.5e-60 234.2 192 67.2
CiPaw.02G171800 Carya illinoinensis HOM05D007188 ORTHO05D009102 1.2e-59 233.8 180 66.1
Gohir.A05G293300 Gossypium hirsutum HOM05D007188 ORTHO05D009102 2.1e-59 233.0 203 62.1
TWI38G2147 Tripterygium wilfordii HOM05D007188 ORTHO05D009102 2.1e-59 233.0 209 62.7
Eucgr.G02872 Eucalyptus grandis HOM05D007188 ORTHO05D009102 1.0e-58 230.7 216 59.7
Glyma.20G183500 Glycine max HOM05D007188 ORTHO05D009102 1.0e-58 230.7 202 62.4
Gohir.D05G294000 Gossypium hirsutum HOM05D007188 ORTHO05D009102 1.4e-58 230.3 209 61.2
Gorai.009G310600 Gossypium raimondii HOM05D007188 ORTHO05D009102 8.9e-58 227.6 202 61.4
Phvul.007G099300 Phaseolus vulgaris HOM05D007188 ORTHO05D009102 8.9e-58 227.6 176 65.3
VMungo0720G2339 Vigna mungo HOM05D007188 ORTHO05D009102 1.2e-57 227.3 201 61.2
Nn6g35269 Nelumbo nucifera HOM05D007188 ORTHO05D009102 2.0e-57 226.5 198 63.6
Actinidia38870 Actinidia chinensis HOM05D007188 ORTHO05D009102 4.9e-56 221.9 197 57.4
SGA_v2.0_scaffold62G21381 Striga asiatica HOM05D007188 ORTHO05D009102 8.3e-56 221.1 176 62.5
Atru.chr12.855 Acer truncatum HOM05D007188 ORTHO05D009102 1.4e-55 220.3 208 59.6
Aqoxy1G01136 Aquilegia oxysepala HOM05D007188 ORTHO05D009102 1.4e-55 220.3 201 60.2
PSO063G4012 Papaver somniferum HOM05D007188 ORTHO05D009102 2.4e-55 219.5 160 64.4
TAR623G0008 Trochodendron aralioides HOM05D007188 ORTHO05D009102 4.1e-55 218.8 193 62.7
Sed0000210 Sechium edule HOM05D007188 ORTHO05D009102 5.4e-55 218.4 206 59.7
Ca_10538_v3 Cicer arietinum L. HOM05D007188 ORTHO05D009102 3.5e-54 215.7 176 61.9
Medtr1g094160 Medicago truncatula HOM05D007188 ORTHO05D009102 3.5e-54 215.7 192 59.9
arahy.Tifrunner.gnm1.ann1.3RW2WH Arachis hypogaea HOM05D007188 ORTHO05D009102 5.9e-54 214.9 155 70.3
arahy.Tifrunner.gnm1.ann1.CRM3NE Arachis hypogaea HOM05D007188 ORTHO05D009102 5.9e-54 214.9 155 70.3
CsaV3_5G036040 Cucumis sativus L. HOM05D007188 ORTHO05D009102 7.8e-54 214.5 203 59.1
Lj5g0026151 Lotus japonicus HOM05D007188 ORTHO05D009102 1.0e-53 214.2 214 56.1
Nitab4.5_0001760g0020 Nicotiana tabacum HOM05D007188 ORTHO05D009102 1.0e-53 214.2 184 59.8
Aa31LG3G3010 Aethionema arabicum HOM05D007188 ORTHO05D009102 1.3e-53 213.8 206 56.8
CDE09G0470 Ceratophyllum demersum HOM05D007188 ORTHO05D009102 1.3e-53 213.8 167 59.9
Prupe.2G208300 Prunus persica HOM05D007188 ORTHO05D009102 2.3e-53 213.0 171 66.1
Sopen05g034000 Solanum pennellii HOM05D007188 ORTHO05D009102 2.3e-53 213.0 164 65.2
SalBow4G2327 Salvia bowleyana HOM05D007188 ORTHO05D009102 3.0e-53 212.6 168 62.5
MELO3C012404.2 Cucumis melo HOM05D007188 ORTHO05D009102 5.0e-53 211.8 203 58.6
ECA233G0714 Erigeron canadensis HOM05D007188 ORTHO05D009102 6.6e-53 211.5 174 60.3
Lsat_1_v5_gn_8_20860 Lactuca sativa HOM05D007188 ORTHO05D009102 6.6e-53 211.5 182 58.8
ClCG05G021230 Citrullus lanatus HOM05D007188 ORTHO05D009102 8.6e-53 211.1 209 57.9
Migut.F01952 Erythranthe guttata HOM05D007188 ORTHO05D009102 8.6e-53 211.1 210 56.7
Solyc05g055550.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 8.6e-53 211.1 185 60.5
Zm00001eb022660 Zea mays HOM05D007188 ORTHO05D009102 1.5e-52 210.3 148 68.2
RhsimUnG0185400 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.5e-52 209.5 146 69.9
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 3.3e-52 209.1 208 54.3
C03p44120 Brassica napus HOM05D007188 ORTHO05D009102 5.6e-52 208.4 178 59.6
HanXRQChr08g0218401 Helianthus annuus HOM05D007188 ORTHO05D009102 5.6e-52 208.4 181 59.1
BolC3t16687H Brassica oleracea HOM05D007188 ORTHO05D009102 7.3e-52 208.0 175 59.4
Sc06g0002050 Simmondsia chinensis HOM05D007188 ORTHO05D009102 9.5e-52 207.6 144 70.8
Solyc02g033060.3 Solanum lycopersicum HOM05D007188 ORTHO05D009102 1.2e-51 207.2 164 64.0
TPR.G10293 Trifolium pratense HOM05D007188 ORTHO05D009102 1.6e-51 206.8 195 56.4
A03p36520 Brassica napus HOM05D007188 ORTHO05D009102 2.1e-51 206.5 176 59.1
Rhsim09G0148000 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.1e-51 206.5 146 69.2
BraA03t12819Z Brassica rapa HOM05D007188 ORTHO05D009102 6.2e-51 204.9 176 58.5
PGSC0003DMG400023370 Solanum tuberosum HOM05D007188 ORTHO05D009102 6.2e-51 204.9 185 59.5
CAN.G694.38 Capsicum annuum HOM05D007188 ORTHO05D009102 8.0e-51 204.5 149 65.8
Thhalv10021497m.g Eutrema salsugineum HOM05D007188 ORTHO05D009102 8.0e-51 204.5 150 65.3
Glyma.10G207400 Glycine max HOM05D007188 ORTHO05D009102 8.0e-51 204.5 199 57.3
AL3G21760 Arabidopsis lyrata HOM05D007188 ORTHO05D009102 1.8e-50 203.4 150 65.3
AUR62014280 Chenopodium quinoa HOM05D007188 ORTHO05D009102 1.8e-50 203.4 205 58.0
Lalb_Chr21g0313651 Lupinus albus HOM05D007188 ORTHO05D009102 1.8e-50 203.4 193 55.4
Os10g0545100 Oryza sativa ssp. japonica HOM05D007188 ORTHO05D009102 1.8e-50 203.4 154 64.9
Psat6g181120 Pisum sativum HOM05D007188 ORTHO05D009102 2.3e-50 203.0 199 54.3
Carub.0003s0959 Capsella rubella HOM05D007188 ORTHO05D009102 1.2e-49 200.7 179 59.8
Sp3g08680 Schrenkiella parvula HOM05D007188 ORTHO05D009102 1.2e-49 200.7 185 55.7
AT3G10405 Arabidopsis thaliana HOM05D007188 ORTHO05D009102 2.0e-49 199.9 169 59.8
unitig_88.g27814 Utricularia gibba HOM05D007188 ORTHO05D009102 2.0e-49 199.9 163 60.7
CARHR084890 Cardamine hirsuta HOM05D007188 ORTHO05D009102 3.4e-49 199.1 194 55.7
Peaxi162Scf00176g01519 Petunia axillaris HOM05D007188 ORTHO05D009102 5.8e-49 198.4 149 63.8
THA.LOC104826897 Tarenaya hassleriana HOM05D007188 ORTHO05D009102 5.8e-49 198.4 225 52.4
COL.COLO4_36178 Corchorus olitorius HOM05D007188 ORTHO05D009102 1.9e-47 193.4 220 51.4
Haze_16743 Corylus avellana HOM05D007188 ORTHO05D009102 5.4e-47 191.8 208 54.8
Dinv31237 Davidia involucrata HOM05D007188 ORTHO05D009102 5.4e-47 191.8 167 59.3
FAN10G3168 Fragaria x ananassa HOM05D007188 ORTHO05D009102 1.6e-46 190.3 109 91.7
Thecc.10G085100 Theobroma cacao HOM05D007188 ORTHO05D009102 5.6e-44 181.8 168 60.7
Sopen02g011440 Solanum pennellii HOM05D007188 ORTHO05D009102 7.3e-44 181.4 125 67.2
BcaC01g04184 Brassica carinata HOM05D007188 ORTHO05D009102 1.8e-42 176.8 193 50.8
EL10Ac4g08743 Beta vulgaris HOM05D007188 ORTHO05D009102 1.3e-40 170.6 139 63.3
Pp3c2_18450 Physcomitrium patens HOM05D007188 ORTHO05D009102 1.3e-37 160.6 150 52.7
Mapoly0050s0048 Marchantia polymorpha HOM05D007188 ORTHO05D009102 3.9e-37 159.1 150 53.3
Mapoly0278s0008 Marchantia polymorpha HOM05D007188 ORTHO05D009102 3.9e-37 159.1 150 53.3
Nitab4.5_0000096g0330 Nicotiana tabacum HOM05D007188 ORTHO05D009102 1.1e-36 157.5 158 53.2
Hund14950 Selenicereus undatus HOM05D007188 ORTHO05D009102 2.8e-35 152.9 143 58.0
vmacro04839 Vaccinium macrocarpon HOM05D007188 ORTHO05D009102 8.1e-35 151.4 143 56.6
Ciclev10033195m.g Citrus clementina HOM05D007188 ORTHO05D009102 5.4e-31 138.7 84 78.6
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 1.1e-26 124.4 149 43.0
SMO358G0267 Selaginella moellendorffii HOM05D007188 ORTHO05D009102 1.3e-24 117.5 155 38.7
PSO339G6470 Papaver somniferum HOM05D007188 ORTHO05D009102 1.1e-23 114.4 115 51.3
CBR_g28804 Chara braunii HOM05D007188 ORTHO05D009102 1.5e-20 104.0 183 33.9
SEGI_08985 Sequoiadendron giganteum HOM05D007188 ORTHO05D009102 6.2e-19 98.6 66 72.7
MCO11G330 Micromonas commoda HOM05D007188 ORTHO05D009102 1.2e-17 94.4 125 34.4
PRCOL_00002171 Prasinoderma coloniale HOM05D007188 ORTHO05D009102 1.2e-14 84.3 149 34.2
Cre10.g464650 Chlamydomonas reinhardtii HOM05D007188 ORTHO05D009102 6.0e-14 82.0 138 31.9
Rhsim09G0147800 Rhododendron simsii HOM05D007188 ORTHO05D009102 2.4e-10 70.1 190 34.7
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 3.4e-09 66.2 49 57.1
RhsimUnG0185100 Rhododendron simsii HOM05D007188 ORTHO05D009102 5.8e-09 65.5 193 31.1
Oeu034116.1 Olea europaea HOM05D007188 ORTHO05D009102 9.9e-09 64.7 47 66.0
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 1.7e-08 63.9 44 68.2
AUR62034156 Chenopodium quinoa HOM05D007188 ORTHO05D009102 8.4e-08 61.6 95 50.5
vmacro04837 Vaccinium macrocarpon HOM05D000026 ORTHO05D000094 1.6e-06 57.4 43 62.8


User provided reference genes

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