Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G3106 Fragaria x ananassa HOM05D024349 ORTHO05D015890 1.2e-97 359.8 175 100.0
FvH4_7g02841 Fragaria vesca HOM05D024349 ORTHO05D015890 2.5e-90 335.5 175 93.1
FAN03G3190 Fragaria x ananassa HOM05D000007 ORTHO05D015890 5.3e-69 264.6 137 93.4
FAN05G2691 Fragaria x ananassa HOM05D024349 ORTHO05D015890 1.3e-46 190.3 142 68.3
FAN09G3143 Fragaria x ananassa HOM05D000007 ORTHO05D025501 7.1e-21 104.8 79 68.4
FvH4_6g38601 Fragaria vesca HOM05D024349 ORTHO05D025501 1.5e-15 87.0 99 49.5
MD09G1135400 Malus domestica HOM05D000007 ORTHO05D000017 2.9e-14 82.8 140 40.0
FAN05G4693 Fragaria x ananassa HOM05D024349 ORTHO05D015890 3.7e-14 82.4 57 66.7
MD17G1124300 Malus domestica HOM05D000007 ORTHO05D000017 8.4e-14 81.3 164 32.9
RcHm_v2.0_Chr2g0153011 Rosa chinensis HOM05D000007 ORTHO05D000017 1.1e-13 80.9 144 36.1
Prupe.3G191200 Prunus persica HOM05D000007 ORTHO05D000017 1.4e-13 80.5 156 33.3
FAN09G0710 Fragaria x ananassa HOM05D051062 ORTHO05D046585 1.6e-12 77.0 141 36.9
Prupe.3G191300 Prunus persica HOM05D000007 ORTHO05D000017 1.6e-12 77.0 161 34.8
FAN19G1118 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.5e-12 75.9 112 39.3
FAN28G0255 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.5e-12 75.9 112 39.3
RcHm_v2.0_Chr5g0030151 Rosa chinensis HOM05D000007 ORTHO05D000017 3.9e-11 72.4 149 33.6
RcHm_v2.0_Chr4g0391071 Rosa chinensis HOM05D000007 ORTHO05D000017 5.1e-11 72.0 147 34.7
RcHm_v2.0_Chr5g0006271 Rosa chinensis HOM05D000007 ORTHO05D000017 1.9e-10 70.1 106 41.5
FvH4_7g09380 Fragaria vesca HOM05D000007 ORTHO05D035521 2.5e-10 69.7 135 33.3
FAN06G3730 Fragaria x ananassa HOM05D000007 ORTHO05D035521 2.5e-10 69.7 135 33.3
FAN16G2717 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.3e-10 68.9 107 41.1
FvH4_7g25410 Fragaria vesca HOM05D000007 ORTHO05D000017 7.3e-10 68.2 161 30.4
FAN10G4360 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.6e-10 67.8 168 30.4
FvH4_3g33320 Fragaria vesca HOM05D000007 ORTHO05D000017 1.2e-09 67.4 166 30.1
FAN11G2267 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.2e-09 67.4 166 30.1
FvH4_3g03940 Fragaria vesca HOM05D000007 ORTHO05D000017 1.6e-09 67.0 107 41.1
Actinidia00083 Actinidia chinensis HOM05D000007 ORTHO05D000017 2.8e-09 66.2 102 36.3
FAN06G0125 Fragaria x ananassa HOM05D000007 ORTHO05D035521 2.8e-09 66.2 133 32.3
RcHm_v2.0_Chr7g0203691 Rosa chinensis HOM05D000007 ORTHO05D000017 3.6e-09 65.9 149 31.5
FAN05G1384 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.2e-09 65.1 87 41.4
RcHm_v2.0_Chr5g0060711 Rosa chinensis HOM05D000007 ORTHO05D000017 6.2e-09 65.1 121 33.1
RcHm_v2.0_Chr2g0154671 Rosa chinensis HOM05D000007 ORTHO05D000017 8.1e-09 64.7 105 39.0
RcHm_v2.0_Chr5g0060681 Rosa chinensis HOM05D000007 ORTHO05D000017 1.1e-08 64.3 118 33.9
FvH4_1g00300 Fragaria vesca HOM05D000007 ORTHO05D000017 1.4e-08 63.9 109 34.9
FvH4_7g09840 Fragaria vesca HOM05D000007 ORTHO05D000017 1.4e-08 63.9 107 37.4
FAN28G1536 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.4e-08 63.9 109 34.9
RcHm_v2.0_Chr2g0084671 Rosa chinensis HOM05D000007 ORTHO05D000017 1.4e-08 63.9 121 32.2
FAN14G1591 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.8e-08 63.5 105 38.1
MD04G1162000 Malus domestica HOM05D000007 ORTHO05D000017 1.8e-08 63.5 147 30.6
Prupe.1G567200 Prunus persica HOM05D000007 ORTHO05D000017 2.4e-08 63.2 107 33.6
Prupe.7G269000 Prunus persica HOM05D000007 ORTHO05D000017 2.4e-08 63.2 107 34.6
RcHm_v2.0_Chr2g0154611 Rosa chinensis HOM05D000007 ORTHO05D000017 2.4e-08 63.2 107 36.4
FAN03G2025 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.1e-08 62.8 107 37.4
FAN26G0443 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.1e-08 62.8 109 33.9
RcHm_v2.0_Chr2g0154591 Rosa chinensis HOM05D000007 ORTHO05D000017 3.1e-08 62.8 114 32.5
FAN06G4529 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.0e-08 62.4 107 37.4
FAN02G3812 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.2e-08 62.0 168 28.6
Oeu009398.1 Olea europaea HOM05D000007 ORTHO05D000017 5.2e-08 62.0 130 33.8
FAN07G2879 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.8e-08 61.6 122 32.8
RcHm_v2.0_Chr2g0154581 Rosa chinensis HOM05D000007 ORTHO05D000017 8.9e-08 61.2 152 30.9
Rhsim04G0210300 Rhododendron simsii HOM05D000007 ORTHO05D013331 1.2e-07 60.8 107 34.6
RcHm_v2.0_Chr6g0275741 Rosa chinensis HOM05D000007 ORTHO05D000017 1.2e-07 60.8 109 32.1
QL11p009377 Quercus lobata HOM05D000007 ORTHO05D000017 1.5e-07 60.5 111 32.4
FAN10G3976 Fragaria x ananassa HOM05D000007 ORTHO05D015890 2.0e-07 60.1 107 36.4
RcHm_v2.0_Chr4g0395621 Rosa chinensis HOM05D000007 ORTHO05D000521 2.6e-07 59.7 108 32.4
FAN16G1154 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.4e-07 59.3 111 34.2
Atru.chr4.2414 Acer truncatum HOM05D000007 ORTHO05D000017 4.4e-07 58.9 111 32.4
RcHm_v2.0_Chr5g0061011 Rosa chinensis HOM05D000007 ORTHO05D000017 4.4e-07 58.9 177 29.4
FAN03G3334 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.8e-07 58.5 161 27.3
FAN25G1004 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.8e-07 58.5 151 31.8
MD02G1002000 Malus domestica HOM05D000007 ORTHO05D000017 5.8e-07 58.5 107 32.7
Medtr7g077970 Medicago truncatula HOM05D000007 ORTHO05D000017 5.8e-07 58.5 120 35.8
Atru.chr4.2390 Acer truncatum HOM05D000007 ORTHO05D000017 7.6e-07 58.2 111 32.4
Oeu047068.1 Olea europaea HOM05D000007 ORTHO05D000017 7.6e-07 58.2 103 36.9
RcHm_v2.0_Chr5g0060691 Rosa chinensis HOM05D000007 ORTHO05D000017 7.6e-07 58.2 113 36.3
Migut.G01128 Erythranthe guttata HOM05D000007 ORTHO05D000017 9.9e-07 57.8 158 33.5
FAN05G3133 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.9e-07 57.8 121 33.1
FAN06G2196 Fragaria x ananassa HOM05D000007 ORTHO05D000399 9.9e-07 57.8 127 31.5
RcHm_v2.0_Chr2g0154601 Rosa chinensis HOM05D000007 ORTHO05D000017 9.9e-07 57.8 112 32.1
RcHm_v2.0_Chr2g0154651 Rosa chinensis HOM05D000007 ORTHO05D015890 1.3e-06 57.4 105 35.2
FAN11G1320 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.7e-06 57.0 118 33.9
RcHm_v2.0_Chr2g0154521 Rosa chinensis HOM05D000007 ORTHO05D000017 2.2e-06 56.6 109 33.9
PGSC0003DMG400004709 Solanum tuberosum HOM05D000007 ORTHO05D000017 2.2e-06 56.6 109 30.3
DCAR_016394 Daucus carota HOM05D000007 ORTHO05D000521 2.9e-06 56.2 109 31.2
DCAR_016395 Daucus carota HOM05D000007 ORTHO05D000521 2.9e-06 56.2 109 31.2
DCAR_016396 Daucus carota HOM05D000007 ORTHO05D000521 2.9e-06 56.2 109 31.2
DCAR_016397 Daucus carota HOM05D000007 ORTHO05D000521 2.9e-06 56.2 109 31.2
DCAR_016398 Daucus carota HOM05D000007 ORTHO05D000521 2.9e-06 56.2 109 31.2
FAN26G1796 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.9e-06 56.2 89 37.1
Lsat_1_v5_gn_9_103981 Lactuca sativa HOM05D000007 ORTHO05D000521 2.9e-06 56.2 94 38.3
QL08p029175 Quercus lobata HOM05D000007 ORTHO05D000521 2.9e-06 56.2 108 38.9
RcHm_v2.0_Chr2g0154711 Rosa chinensis HOM05D000007 ORTHO05D000017 2.9e-06 56.2 105 34.3
vmacro01993 Vaccinium macrocarpon HOM05D000007 ORTHO05D000521 2.9e-06 56.2 100 32.0
RcHm_v2.0_Chr1g0347341 Rosa chinensis HOM05D000007 ORTHO05D000017 3.8e-06 55.8 116 32.8
SalBow8G4267 Salvia bowleyana HOM05D000007 ORTHO05D000017 3.8e-06 55.8 125 28.8
MSTRG.7163 Avicennia marina HOM05D000007 ORTHO05D000017 4.9e-06 55.5 107 32.7
Migut.H01607 Erythranthe guttata HOM05D000007 ORTHO05D000017 4.9e-06 55.5 159 28.9
FAN09G0423 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.9e-06 55.5 101 35.6
FAN10G1271 Fragaria x ananassa HOM05D000007 ORTHO05D015890 4.9e-06 55.5 107 35.5
PGSC0003DMG400040733 Solanum tuberosum HOM05D000007 ORTHO05D000017 4.9e-06 55.5 150 23.3
vmacro09383 Vaccinium macrocarpon HOM05D000007 ORTHO05D000521 4.9e-06 55.5 111 30.6
Migut.C01213 Erythranthe guttata HOM05D000007 ORTHO05D000521 6.4e-06 55.1 122 31.1
Lsat_1_v5_gn_9_68660 Lactuca sativa HOM05D000007 ORTHO05D000017 6.4e-06 55.1 103 33.0
Potri.001G129200 Populus trichocarpa HOM05D000007 ORTHO05D000521 6.4e-06 55.1 114 28.1
Rhsim04G0209700 Rhododendron simsii HOM05D000007 ORTHO05D010342 6.4e-06 55.1 147 30.6
Sabra01G0099300 Salix brachista HOM05D000007 ORTHO05D000521 6.4e-06 55.1 114 28.9
CAN.G484.34 Capsicum annuum HOM05D000007 ORTHO05D000017 8.4e-06 54.7 108 29.6
Ca_25968_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 8.4e-06 54.7 104 33.7
MD09G1144500 Malus domestica HOM05D000007 ORTHO05D000017 8.4e-06 54.7 106 33.0
RcHm_v2.0_Chr3g0475741 Rosa chinensis HOM05D000007 ORTHO05D029556 8.4e-06 54.7 106 34.0
Sopen12g034230 Solanum pennellii HOM05D000007 ORTHO05D000017 8.4e-06 54.7 105 30.5


User provided reference genes

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