Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 6.6e-123 444.1 234 100.0
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 8.0e-121 437.2 234 98.3
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 7.5e-119 430.6 234 97.0
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 9.8e-119 430.3 234 97.0
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 8.3e-118 427.2 233 96.1
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.8e-117 426.0 226 98.7
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 5.4e-109 397.9 235 91.5
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 3.2e-93 345.5 234 79.9
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 3.6e-89 332.0 234 77.8
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 8.9e-88 327.4 233 75.1
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 1.7e-86 323.2 229 75.5
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 3.8e-86 322.0 234 72.2
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 3.9e-83 312.0 233 73.0
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 8.7e-83 310.8 234 72.2
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.1e-82 310.5 234 72.6
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 1.1e-82 310.5 234 72.6
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.6e-81 306.6 234 70.5
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 2.6e-79 299.3 254 65.7
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 5.8e-79 298.1 229 71.2
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 7.6e-79 297.7 254 65.4
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 9.9e-79 297.4 233 68.2
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 1.7e-78 296.6 235 68.1
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 3.8e-78 295.4 254 66.5
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 4.9e-78 295.0 253 65.2
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.4e-77 293.5 254 64.6
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 7.1e-77 291.2 254 63.4
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 1.2e-76 290.4 233 67.4
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 1.6e-76 290.0 215 71.2
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 1.6e-76 290.0 250 63.6
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 3.5e-76 288.9 234 68.4
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 4.6e-76 288.5 214 73.4
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 7.9e-76 287.7 234 67.9
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 7.9e-76 287.7 234 65.4
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 1.0e-75 287.3 234 67.5
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 8.7e-75 284.3 254 61.4
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 1.1e-74 283.9 236 67.8
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 1.1e-74 283.9 229 69.0
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 2.5e-74 282.7 232 65.5
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 4.3e-74 282.0 237 66.2
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 4.3e-74 282.0 229 68.6
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 5.6e-74 281.6 234 67.9
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 1.6e-73 280.0 229 67.7
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 2.1e-73 279.6 234 63.7
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 4.8e-73 278.5 229 66.8
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 8.1e-73 277.7 234 65.8
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 8.1e-73 277.7 234 63.2
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 2.4e-72 276.2 239 65.7
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 5.3e-72 275.0 234 64.5
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 5.3e-72 275.0 237 67.5
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 1.5e-71 273.5 222 68.9
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 2.0e-71 273.1 222 68.9
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 4.5e-71 271.9 237 67.1
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 5.8e-71 271.6 236 64.0
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 5.8e-71 271.6 229 66.4
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 7.6e-71 271.2 240 63.8
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 7.6e-71 271.2 237 65.4
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 7.6e-71 271.2 235 66.4
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 7.6e-71 271.2 229 67.2
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 9.9e-71 270.8 238 63.9
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 1.7e-70 270.0 236 64.4
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 1.7e-70 270.0 244 63.5
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 1.7e-70 270.0 235 66.4
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 1.7e-70 270.0 238 65.5
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 2.2e-70 269.6 236 64.4
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 1.1e-69 267.3 238 64.7
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 1.9e-69 266.5 240 62.9
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 1.9e-69 266.5 240 62.9
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 7.1e-69 264.6 250 60.0
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 1.2e-68 263.8 218 67.9
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 1.6e-68 263.5 236 61.0
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 2.1e-68 263.1 247 61.1
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 2.7e-68 262.7 222 65.8
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 2.7e-68 262.7 233 62.2
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 3.9e-67 258.8 235 61.7
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 5.1e-67 258.5 202 69.8
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 5.1e-67 258.5 217 67.7
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 8.7e-67 257.7 260 57.7
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 3.3e-66 255.8 252 58.7
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 1.3e-65 253.8 264 57.6
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 2.8e-65 252.7 199 66.8
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 1.1e-64 250.8 199 69.3
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 1.4e-64 250.4 201 67.2
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 1.8e-64 250.0 227 60.8
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 2.4e-64 249.6 236 60.6
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 6.9e-64 248.1 178 74.7
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 1.2e-63 247.3 236 61.9
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 1.5e-63 246.9 207 66.2
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 8.4e-62 241.1 203 62.6
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 2.7e-60 236.1 229 62.0
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 2.7e-60 236.1 201 61.7
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 4.6e-60 235.3 201 62.7
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 1.0e-59 234.2 178 70.8
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 3.1e-56 222.6 202 59.4
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 2.9e-54 216.1 156 69.9
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 3.2e-53 212.6 196 58.2
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 6.3e-49 198.4 232 49.6
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 5.3e-48 195.3 195 57.4
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 2.0e-47 193.4 239 49.4
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 4.2e-45 185.7 235 47.7
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 3.3e-42 176.0 162 61.1
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 7.4e-42 174.9 234 49.1
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 2.8e-41 172.9 179 54.7
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 1.1e-40 171.0 220 47.7
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 1.8e-40 170.2 216 49.5
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 7.2e-37 158.3 191 49.2
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 2.1e-36 156.8 155 54.2
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 3.6e-36 156.0 227 44.5
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 2.8e-33 146.4 112 67.0
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 7.0e-32 141.7 155 49.0
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 6.3e-25 118.6 110 61.8
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 2.4e-24 116.7 104 58.7
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 9.1e-24 114.8 156 46.2
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 7.2e-21 105.1 162 42.6
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 6.3e-17 92.0 112 42.0
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 1.3e-14 84.3 218 31.2
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.5e-07 59.3 63 57.1
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.5e-07 59.3 63 57.1
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 5.9e-07 58.9 63 57.1
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 5.9e-07 58.9 35 77.1
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.0e-06 58.2 63 54.0
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.7e-06 57.4 63 55.6


User provided reference genes

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