Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.4e-104 381.3 196 100.0
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.0e-100 367.9 190 99.5
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.1e-99 366.7 190 98.9
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.1e-99 366.7 190 98.9
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 3.2e-99 365.2 190 98.4
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.2e-98 363.2 190 97.9
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.2e-98 363.2 190 97.9
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 3.6e-98 361.7 190 96.3
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 2.3e-89 332.4 193 88.6
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 2.4e-86 322.4 193 86.5
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.6e-85 319.7 196 82.7
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 7.0e-78 294.3 196 77.6
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 9.2e-78 293.9 194 77.3
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 4.6e-77 291.6 194 76.3
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 1.9e-75 286.2 195 72.8
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 9.5e-75 283.9 196 75.5
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 1.6e-74 283.1 197 73.6
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 4.7e-74 281.6 195 74.9
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 3.1e-73 278.9 190 74.7
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 3.1e-73 278.9 197 73.1
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 3.1e-73 278.9 197 73.6
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 3.1e-73 278.9 197 73.6
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 3.1e-73 278.9 197 73.6
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 4.0e-73 278.5 190 74.7
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 4.0e-73 278.5 190 74.7
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 5.2e-73 278.1 190 74.7
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 6.8e-73 277.7 192 74.0
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 6.8e-73 277.7 192 74.0
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 3.4e-72 275.4 195 75.9
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 5.8e-72 274.6 192 72.9
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 5.8e-72 274.6 195 72.3
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 7.5e-72 274.2 197 72.6
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 1.7e-71 273.1 192 72.9
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 3.7e-71 271.9 192 72.4
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 4.9e-71 271.6 194 71.1
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 6.4e-71 271.2 190 73.2
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 8.3e-71 270.8 195 72.3
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 1.4e-70 270.0 192 71.4
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 1.4e-70 270.0 192 72.9
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 2.4e-70 269.2 194 71.6
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 2.4e-70 269.2 194 71.6
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 2.4e-70 269.2 194 72.2
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 4.1e-70 268.5 196 68.9
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.2e-69 266.9 197 71.6
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 1.2e-69 266.9 190 72.1
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 1.2e-69 266.9 190 72.1
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 1.2e-69 266.9 195 68.7
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 4.6e-69 265.0 196 69.4
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 7.8e-69 264.2 191 70.2
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 1.0e-68 263.8 201 69.7
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 1.3e-68 263.5 193 70.5
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 1.3e-68 263.5 195 66.7
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 1.7e-68 263.1 199 69.8
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.7e-68 263.1 191 68.6
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 3.0e-68 262.3 193 68.9
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 3.0e-68 262.3 201 68.7
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 3.0e-68 262.3 188 68.6
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 3.9e-68 261.9 192 71.4
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 5.0e-68 261.5 197 67.5
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.1e-67 260.4 195 68.7
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 1.5e-67 260.0 195 67.2
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 1.9e-67 259.6 187 69.5
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 1.9e-67 259.6 201 68.7
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.9e-67 259.6 194 71.1
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 2.5e-67 259.2 189 71.4
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 5.6e-67 258.1 190 67.9
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 1.6e-66 256.5 193 68.9
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 4.7e-66 255.0 193 70.5
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 4.7e-66 255.0 193 66.8
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 6.2e-66 254.6 195 67.2
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 1.1e-65 253.8 191 70.2
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 1.4e-65 253.4 189 67.7
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 1.4e-65 253.4 200 65.0
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 1.8e-65 253.1 193 68.9
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 3.1e-65 252.3 194 66.0
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 4.0e-65 251.9 194 68.0
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 4.0e-65 251.9 199 67.3
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 1.2e-64 250.4 169 72.2
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.5e-64 250.0 197 67.5
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 1.5e-64 250.0 195 69.2
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 2.6e-64 249.2 199 66.8
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 2.6e-64 249.2 192 66.7
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 4.4e-64 248.4 192 68.8
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 5.8e-64 248.1 194 66.0
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 9.9e-64 247.3 194 67.0
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 1.7e-63 246.5 193 66.3
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 2.2e-63 246.1 190 66.8
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 2.2e-63 246.1 189 66.1
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 2.9e-63 245.7 194 68.6
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 6.4e-63 244.6 184 66.8
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 1.4e-62 243.4 196 67.3
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.9e-62 243.0 192 67.2
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 2.4e-62 242.7 190 67.9
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 4.1e-62 241.9 198 66.7
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 1.2e-61 240.4 198 66.7
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.6e-61 240.0 182 65.4
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.6e-61 240.0 192 65.6
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 1.6e-61 240.0 195 66.2
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 2.7e-61 239.2 197 64.0
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 1.7e-60 236.5 192 62.0
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 3.0e-60 235.7 169 68.0
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 3.6e-58 228.8 160 67.5
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 6.2e-58 228.0 176 70.5
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 5.2e-57 224.9 195 60.5
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 2.2e-55 219.5 240 52.9
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 3.3e-51 205.7 193 60.1
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 4.3e-51 205.3 148 64.2
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 9.6e-51 204.1 134 71.6
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 1.2e-50 203.8 148 64.2
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 3.4e-48 195.7 151 62.9
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 9.9e-48 194.1 111 83.8
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.3e-47 193.7 190 51.6
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 1.9e-46 189.9 171 52.0
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 3.2e-46 189.1 138 63.0
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 5.4e-46 188.3 138 64.5
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 9.0e-41 171.0 152 63.8
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 1.3e-34 150.6 156 52.6
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 4.0e-33 145.6 83 81.9
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 9.3e-30 134.4 89 76.4
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 3.5e-29 132.5 111 54.1
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 3.3e-27 125.9 125 47.2
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.4e-25 120.6 76 78.9
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 3.4e-24 115.9 193 40.9
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 3.4e-24 115.9 193 40.9
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 5.8e-24 115.2 193 40.9
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.1e-19 100.9 79 68.4
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.9e-19 100.1 138 39.9
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 1.4e-14 84.0 66 66.7
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 7.2e-14 81.6 85 58.8
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 7.4e-11 71.6 60 61.7
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.3e-10 70.9 43 74.4
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 2.8e-10 69.7 39 87.2
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 3.7e-10 69.3 44 65.9
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 9.1e-09 64.7 117 29.9
Sc24g0002240 Simmondsia chinensis HOM05D006032 ORTHO05D007544 4.2e-06 55.8 48 58.3


User provided reference genes

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