Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2944 Fragaria x ananassa HOM05D007943 ORTHO05D010047 6.0e-64 247.3 119 100.0
FAN10G1708 Fragaria x ananassa HOM05D007943 ORTHO05D010047 2.5e-62 241.9 119 97.5
FvH4_7g17420 Fragaria vesca HOM05D007943 ORTHO05D010047 6.2e-61 237.3 119 96.6
FAN06G1823 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.8e-60 235.7 118 95.8
FAN03G2903 Fragaria x ananassa HOM05D007943 ORTHO05D010047 5.2e-60 234.2 118 94.9
FAN10G0207 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.3e-58 229.6 119 95.0
RcHm_v2.0_Chr1g0360861 Rosa chinensis HOM05D007943 ORTHO05D010047 4.8e-53 211.1 119 86.6
Prupe.2G195800 Prunus persica HOM05D007943 ORTHO05D010047 2.8e-37 158.7 119 71.4
MD07G1157400 Malus domestica HOM05D007943 ORTHO05D010047 1.8e-36 156.0 118 66.1
MD01G1087200 Malus domestica HOM05D007943 ORTHO05D010047 4.5e-27 124.8 82 68.3
FAN06G4370 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.4e-25 119.8 57 98.2
Duzib133G1419 Durio zibethinus HOM05D007943 ORTHO05D010047 3.3e-22 108.6 85 58.8
Thecc.01G335100 Theobroma cacao HOM05D007943 ORTHO05D010047 2.2e-21 105.9 63 69.8
CiPaw.01G081100 Carya illinoinensis HOM05D007943 ORTHO05D010047 6.9e-20 100.9 96 50.0
Ciclev10022962m.g Citrus clementina HOM05D007943 ORTHO05D010047 3.4e-19 98.6 77 58.4
Gohir.D07G139100 Gossypium hirsutum HOM05D007943 ORTHO05D010047 3.4e-19 98.6 95 46.3
Gorai.001G151200 Gossypium raimondii HOM05D007943 ORTHO05D010047 3.4e-19 98.6 95 46.3
Gohir.A07G134500 Gossypium hirsutum HOM05D007943 ORTHO05D010047 1.3e-18 96.7 95 46.3
Gohir.D11G104700 Gossypium hirsutum HOM05D007943 ORTHO05D010047 3.8e-18 95.1 76 59.2
COL.COLO4_06217 Corchorus olitorius HOM05D007943 ORTHO05D010047 6.5e-18 94.4 60 61.7
CSS0001750 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 1.1e-17 93.6 104 46.2
Gorai.007G112000 Gossypium raimondii HOM05D007943 ORTHO05D010047 1.1e-17 93.6 76 59.2
Potri.002G177700 Populus trichocarpa HOM05D007943 ORTHO05D010047 1.1e-17 93.6 93 50.5
Atru.chr5.749 Acer truncatum HOM05D007943 ORTHO05D010047 1.9e-17 92.8 85 50.6
CSS0046577 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 2.5e-17 92.4 100 46.0
Glyma.16G020300 Glycine max HOM05D007943 ORTHO05D010047 2.5e-17 92.4 108 43.5
Gohir.A11G100000 Gossypium hirsutum HOM05D007943 ORTHO05D010047 2.5e-17 92.4 55 72.7
Potri.014G104100 Populus trichocarpa HOM05D007943 ORTHO05D010047 3.2e-17 92.0 72 59.7
Manes.05G017800 Manihot esculenta HOM05D007943 ORTHO05D010047 4.2e-17 91.7 87 48.3
Sabra02G0135900 Salix brachista HOM05D007943 ORTHO05D010047 5.5e-17 91.3 96 49.0
GSVIVG01027420001 Vitis vinifera HOM05D007943 ORTHO05D010047 1.2e-16 90.1 96 46.9
QL08p046777 Quercus lobata HOM05D007943 ORTHO05D010047 2.1e-16 89.4 104 45.2
Oeu042966.1 Olea europaea HOM05D007943 ORTHO05D010047 2.7e-16 89.0 64 57.8
TAR629G3284 Trochodendron aralioides HOM05D007943 ORTHO05D010047 7.9e-16 87.4 103 46.6
Glyma.07G051200 Glycine max HOM05D007943 ORTHO05D010047 1.0e-15 87.0 80 50.0
Lalb_Chr10g0100821 Lupinus albus HOM05D007943 ORTHO05D010047 1.4e-15 86.7 56 62.5
TPR.G25267 Trifolium pratense HOM05D007943 ORTHO05D010047 1.4e-15 86.7 93 45.2
Haze_15717 Corylus avellana HOM05D007943 ORTHO05D010047 1.8e-15 86.3 99 46.5
Cfa003750 Carpinus fangiana HOM05D007943 ORTHO05D010047 2.3e-15 85.9 55 63.6
Medtr8g024630 Medicago truncatula HOM05D007943 ORTHO05D010047 2.3e-15 85.9 58 60.3
Lj3g0013373 Lotus japonicus HOM05D007943 ORTHO05D010047 3.0e-15 85.5 77 48.1
Nn3g18838 Nelumbo nucifera HOM05D007943 ORTHO05D010047 3.9e-15 85.1 85 50.6
Manes.01G241300 Manihot esculenta HOM05D007943 ORTHO05D010047 8.8e-15 84.0 98 46.9
Psat4g217240 Pisum sativum HOM05D007943 ORTHO05D010047 1.5e-14 83.2 58 58.6
Sc23g0001870 Simmondsia chinensis HOM05D007943 ORTHO05D010047 9.7e-14 80.5 56 62.5
Phvul.006G116500 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 2.2e-13 79.3 63 54.0
Lalb_Chr02g0157681 Lupinus albus HOM05D007943 ORTHO05D010047 1.1e-12 77.0 78 50.0
Aqoxy7G00012 Aquilegia oxysepala HOM05D007943 ORTHO05D010047 1.8e-12 76.3 77 44.2
arahy.Tifrunner.gnm1.ann1.FJCJ23 Arachis hypogaea HOM05D007943 ORTHO05D010047 2.4e-12 75.9 54 53.7
Glyma.19G259000 Glycine max HOM05D007943 ORTHO05D010047 3.1e-12 75.5 54 53.7
TPR.G4732 Trifolium pratense HOM05D007943 ORTHO05D010047 3.1e-12 75.5 58 55.2
Phvul.010G118200 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 5.3e-12 74.7 67 53.7
CsaV3_3G007690 Cucumis sativus L. HOM05D007943 ORTHO05D010047 9.1e-12 73.9 76 38.2
Glyma.03G260100 Glycine max HOM05D007943 ORTHO05D010047 1.5e-11 73.2 54 51.9
Hund16743 Selenicereus undatus HOM05D007943 ORTHO05D010047 1.5e-11 73.2 55 52.7
AUR62004549 Chenopodium quinoa HOM05D007943 ORTHO05D010047 7.7e-11 70.9 79 39.2
DCAR_006654 Daucus carota HOM05D007943 ORTHO05D010047 7.7e-11 70.9 59 49.2
MELO3C005988.2 Cucumis melo HOM05D007943 ORTHO05D010047 1.3e-10 70.1 53 49.1
CsaV3_3G007710 Cucumis sativus L. HOM05D007943 ORTHO05D010047 1.3e-10 70.1 71 42.3
Rhsim01G0178600 Rhododendron simsii HOM05D007943 ORTHO05D010047 1.3e-10 70.1 86 44.2
TAR375G0647 Trochodendron aralioides HOM05D007943 ORTHO05D010047 1.7e-10 69.7 63 54.0
Sed0006019 Sechium edule HOM05D007943 ORTHO05D010047 2.9e-10 68.9 103 33.0
HPP92_015077 Vanilla planifolia HOM05D000968 ORTHO05D001687 1.4e-09 66.6 56 50.0
AL1G11360 Arabidopsis lyrata HOM05D007943 ORTHO05D010047 5.5e-09 64.7 53 47.2
Carub.0001s0107 Capsella rubella HOM05D007943 ORTHO05D010047 5.5e-09 64.7 55 43.6
Os03g0126900 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 1.2e-08 63.5 57 45.6
Sed0008180 Sechium edule HOM05D007943 ORTHO05D010047 1.6e-08 63.2 53 47.2
ClCG05G000500 Citrullus lanatus HOM05D007943 ORTHO05D010047 2.7e-08 62.4 52 46.2
Zm00001eb073340 Zea mays HOM05D007943 ORTHO05D010047 2.7e-08 62.4 57 47.4
BolC8t52866H Brassica oleracea HOM05D007943 ORTHO05D010047 1.0e-07 60.5 58 44.8
Solyc10g009260.1 Solanum lycopersicum HOM05D007943 ORTHO05D010047 1.0e-07 60.5 50 46.0
A09p68930 Brassica napus HOM05D007943 ORTHO05D010047 1.4e-07 60.1 85 32.9
Zm00001eb260810 Zea mays HOM05D007943 ORTHO05D010047 6.7e-07 57.8 42 57.1
Os04g0577375 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 8.8e-07 57.4 48 45.8
Os03g0315200 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 4.4e-06 55.1 45 44.4
Os08g0113900 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 4.4e-06 55.1 74 40.5
HPP92_022240 Vanilla planifolia HOM05D007943 ORTHO05D010047 7.4e-06 54.3 54 40.7


User provided reference genes

Program Settings