Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2430 Fragaria x ananassa HOM05D000135 ORTHO05D000203 2.5e-59 231.9 114 100.0
FAN01G2941 Fragaria x ananassa HOM05D000135 ORTHO05D000203 2.5e-59 231.9 114 100.0
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 5.4e-54 214.2 104 100.0
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 9.8e-40 166.8 82 98.8
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 9.8e-40 166.8 82 98.8
FvH4_2g06140 Fragaria vesca HOM05D000135 ORTHO05D000203 4.9e-39 164.5 81 100.0
RcHm_v2.0_Chr6g0257051 Rosa chinensis HOM05D000135 ORTHO05D000203 3.3e-35 151.8 81 92.6
Prupe.8G123900 Prunus persica HOM05D000135 ORTHO05D000203 1.2e-29 133.3 81 77.8
MD05G1080100 Malus domestica HOM05D000135 ORTHO05D000203 7.8e-29 130.6 81 75.3
Cfa004515 Carpinus fangiana HOM05D000135 ORTHO05D000203 8.6e-28 127.1 81 74.1
CiPaw.05G006300 Carya illinoinensis HOM05D000135 ORTHO05D000203 1.9e-27 125.9 81 72.8
Hma1.2p1_0370F.1_g137840 Hydrangea macrophylla HOM05D000135 ORTHO05D000203 3.3e-27 125.2 80 71.2
QL11p035985 Quercus lobata HOM05D000135 ORTHO05D000203 3.3e-27 125.2 81 72.8
Ciclev10029360m.g Citrus clementina HOM05D000135 ORTHO05D000203 1.6e-26 122.9 80 71.2
MD10G1094100 Malus domestica HOM05D000135 ORTHO05D000203 4.7e-26 121.3 82 72.0
TWI79G0422 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 1.1e-25 120.2 81 69.1
Potri.009G102500 Populus trichocarpa HOM05D000135 ORTHO05D000203 1.4e-25 119.8 81 66.7
CSS0005567 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 2.4e-25 119.0 80 71.2
Manes.07G082600 Manihot esculenta HOM05D000135 ORTHO05D000203 2.4e-25 119.0 81 69.1
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 3.1e-25 118.6 80 71.2
COL.COLO4_32661 Corchorus olitorius HOM05D000135 ORTHO05D000203 1.2e-24 116.7 80 68.8
CANSAT25G3257 Cannabis sativa HOM05D000135 ORTHO05D000203 4.9e-23 111.3 76 71.1
Peaxi162Scf00152g00004 Petunia axillaris HOM05D000135 ORTHO05D000203 4.9e-23 111.3 80 66.2
Actinidia27955 Actinidia chinensis HOM05D000135 ORTHO05D000203 1.1e-22 110.2 80 63.8
Gohir.D13G038700 Gossypium hirsutum HOM05D000135 ORTHO05D000203 1.1e-22 110.2 79 65.8
GSVIVG01031752001 Vitis vinifera HOM05D000135 ORTHO05D000203 1.1e-22 110.2 76 68.4
Glyma.07G212000 Glycine max HOM05D000135 ORTHO05D000203 1.9e-22 109.4 81 69.1
Gohir.A13G040000 Gossypium hirsutum HOM05D000135 ORTHO05D000203 2.4e-22 109.0 79 64.6
Atru.chr5.2711 Acer truncatum HOM05D000135 ORTHO05D000203 3.2e-22 108.6 81 60.5
CSS0001406 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 5.4e-22 107.8 76 65.8
Gorai.013G043400 Gossypium raimondii HOM05D000135 ORTHO05D000203 5.4e-22 107.8 79 64.6
HanXRQChr16g0501291 Helianthus annuus HOM05D000135 ORTHO05D000203 5.4e-22 107.8 77 67.5
VMungo0251G3651 Vigna mungo HOM05D000135 ORTHO05D000203 5.4e-22 107.8 81 66.7
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 7.1e-22 107.5 86 62.8
CSS0017640 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 9.3e-22 107.1 76 65.8
CAN.G1041.20 Capsicum annuum HOM05D000135 ORTHO05D000203 9.3e-22 107.1 80 62.5
Lsat_1_v5_gn_5_112780 Lactuca sativa HOM05D000135 ORTHO05D000203 9.3e-22 107.1 78 66.7
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 9.3e-22 107.1 82 59.8
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 9.3e-22 107.1 84 64.3
arahy.Tifrunner.gnm1.ann1.0RG3QL Arachis hypogaea HOM05D000135 ORTHO05D000203 1.2e-21 106.7 76 67.1
Ca_18679_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 1.6e-21 106.3 80 65.0
MELO3C018445.2 Cucumis melo HOM05D000135 ORTHO05D000203 1.6e-21 106.3 76 63.2
Lalb_Chr09g0328311 Lupinus albus HOM05D000135 ORTHO05D000203 1.6e-21 106.3 80 65.0
Oeu025574.1 Olea europaea HOM05D000135 ORTHO05D000203 1.6e-21 106.3 80 63.8
Solyc01g108190.3 Solanum lycopersicum HOM05D000135 ORTHO05D000203 1.6e-21 106.3 80 61.2
Lj5P209T45 Lonicera japonica HOM05D000135 ORTHO05D000203 2.1e-21 105.9 78 64.1
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 4.6e-21 104.8 82 58.5
PGR042G1319 Punica granatum HOM05D000135 ORTHO05D000203 4.6e-21 104.8 81 66.7
Thecc.02G100300 Theobroma cacao HOM05D000135 ORTHO05D000203 4.6e-21 104.8 78 65.4
Nitab4.5_0001824g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000203 6.0e-21 104.4 80 63.8
Phvul.003G292700 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 6.0e-21 104.4 81 65.4
TPR.G28489 Trifolium pratense HOM05D000135 ORTHO05D000203 6.0e-21 104.4 92 60.9
Lalb_Chr16g0384691 Lupinus albus HOM05D000135 ORTHO05D000203 1.0e-20 103.6 80 62.5
Sopen01g050420 Solanum pennellii HOM05D000135 ORTHO05D000203 1.0e-20 103.6 80 58.8
Haze_10074 Corylus avellana HOM05D000135 ORTHO05D000203 1.7e-20 102.8 80 61.2
Cfa004516 Carpinus fangiana HOM05D000135 ORTHO05D000203 3.0e-20 102.1 81 59.3
Medtr4g086260 Medicago truncatula HOM05D000135 ORTHO05D000203 3.9e-20 101.7 87 60.9
CsaV3_7G008650 Cucumis sativus L. HOM05D000135 ORTHO05D000203 5.1e-20 101.3 76 59.2
Sc18g0004060 Simmondsia chinensis HOM05D000135 ORTHO05D000203 6.6e-20 100.9 76 61.8
Migut.B00343 Erythranthe guttata HOM05D000135 ORTHO05D000203 8.7e-20 100.5 80 57.5
Lj4g0025559 Lotus japonicus HOM05D000135 ORTHO05D000203 8.7e-20 100.5 80 60.0
Manes.10G056100 Manihot esculenta HOM05D000135 ORTHO05D000203 1.1e-19 100.1 80 62.5
ClCG02G005880 Citrullus lanatus HOM05D000135 ORTHO05D000203 1.5e-19 99.8 76 57.9
SGA_v2.0_scaffold90G27662 Striga asiatica HOM05D000135 ORTHO05D000203 2.5e-19 99.0 82 62.2
Glyma.02G133000 Glycine max HOM05D000135 ORTHO05D000203 4.3e-19 98.2 81 63.0
PGSC0003DMG402025892 Solanum tuberosum HOM05D000135 ORTHO05D000203 5.6e-19 97.8 80 56.2
MSTRG.20153 Avicennia marina HOM05D000135 ORTHO05D000203 1.3e-18 96.7 80 57.5
BcaC04g23042 Brassica carinata HOM05D000135 ORTHO05D000203 2.1e-18 95.9 81 60.5
C09p12790 Brassica napus HOM05D000135 ORTHO05D000203 2.1e-18 95.9 81 60.5
Sed0018642 Sechium edule HOM05D000135 ORTHO05D000203 2.1e-18 95.9 78 55.1
TAR381G0503 Trochodendron aralioides HOM05D000135 ORTHO05D000203 3.6e-18 95.1 76 65.8
Aqoxy5G01242 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 4.8e-18 94.7 79 58.2
AL3G47450 Arabidopsis lyrata HOM05D000135 ORTHO05D000203 4.8e-18 94.7 81 60.5
BcaB07g31784 Brassica carinata HOM05D000135 ORTHO05D000203 6.2e-18 94.4 81 60.5
A09p10820 Brassica napus HOM05D000135 ORTHO05D000203 6.2e-18 94.4 81 60.5
BolC9t54168H Brassica oleracea HOM05D000135 ORTHO05D000203 6.2e-18 94.4 81 60.5
AT2G15680 Arabidopsis thaliana HOM05D000135 ORTHO05D000203 8.1e-18 94.0 81 60.5
BraA09t36724Z Brassica rapa HOM05D000135 ORTHO05D000203 1.1e-17 93.6 81 60.5
CARHR106030 Cardamine hirsuta HOM05D000135 ORTHO05D000203 1.1e-17 93.6 81 59.3
Carub.0003s2954 Capsella rubella HOM05D000135 ORTHO05D000203 1.8e-17 92.8 81 59.3
Cc02_g18730 Coffea canephora HOM05D000135 ORTHO05D000203 1.8e-17 92.8 78 57.7
Atru.chr5.2710 Acer truncatum HOM05D000135 ORTHO05D000203 2.4e-17 92.4 81 56.8
Ah.11g040630 Amaranthus hybridus HOM05D000135 ORTHO05D000203 3.1e-17 92.0 80 55.0
THA.LOC104807357 Tarenaya hassleriana HOM05D000135 ORTHO05D000203 4.0e-17 91.7 84 53.6
PSO170G0143 Papaver somniferum HOM05D000135 ORTHO05D000203 9.0e-17 90.5 76 60.5
Sp3g28920 Schrenkiella parvula HOM05D000135 ORTHO05D000203 9.0e-17 90.5 81 56.8
PSO210G1763 Papaver somniferum HOM05D000135 ORTHO05D000203 1.2e-16 90.1 76 60.5
Thhalv10022869m.g Eutrema salsugineum HOM05D000135 ORTHO05D000203 3.4e-16 88.6 81 58.0
Aqoxy5G01243 Aquilegia oxysepala HOM05D000135 ORTHO05D000203 1.3e-15 86.7 79 55.7
Oeu010587.1 Olea europaea HOM05D001586 ORTHO05D001543 2.2e-15 85.9 80 52.5
AUR62013838 Chenopodium quinoa HOM05D000135 ORTHO05D000203 4.9e-15 84.7 76 55.3
Nn5g30257 Nelumbo nucifera HOM05D000135 ORTHO05D000203 2.4e-14 82.4 71 56.3
Thecc.01G054700 Theobroma cacao HOM05D000135 ORTHO05D000203 9.3e-14 80.5 78 48.7
Duzib187G0789 Durio zibethinus HOM05D000135 ORTHO05D000203 1.0e-12 77.0 79 49.4
Aa31LG8G13310 Aethionema arabicum HOM05D000135 ORTHO05D000203 3.0e-12 75.5 87 48.3
COL.COLO4_11402 Corchorus olitorius HOM05D000135 ORTHO05D000203 3.0e-12 75.5 78 48.7
Gohir.D11G198300 Gossypium hirsutum HOM05D000135 ORTHO05D000203 3.0e-12 75.5 79 48.1
Gorai.007G212400 Gossypium raimondii HOM05D000135 ORTHO05D000203 3.0e-12 75.5 79 48.1
Gohir.A11G191800 Gossypium hirsutum HOM05D000135 ORTHO05D000203 6.7e-12 74.3 79 46.8
Gohir.D03G021400 Gossypium hirsutum HOM05D000135 ORTHO05D000203 1.9e-11 72.8 79 46.8
Gorai.003G023100 Gossypium raimondii HOM05D000135 ORTHO05D000203 1.9e-11 72.8 79 46.8
TAR628G0143 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.9e-11 72.8 77 49.4
TAR628G0636 Trochodendron aralioides HOM05D000135 ORTHO05D000203 1.9e-11 72.8 77 49.4
Ciclev10029994m.g Citrus clementina HOM05D000135 ORTHO05D000203 4.3e-11 71.6 77 44.2
Duzib147G1692 Durio zibethinus HOM05D000135 ORTHO05D000203 4.3e-11 71.6 78 46.2
QL06p041758 Quercus lobata HOM05D000135 ORTHO05D000203 4.3e-11 71.6 81 44.4
HPP92_010963 Vanilla planifolia HOM05D000135 ORTHO05D000203 1.3e-10 70.1 76 47.4
Sabra07G0038000 Salix brachista HOM05D000135 ORTHO05D000203 3.6e-10 68.6 95 42.1
Phvul.002G019300 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 4.8e-10 68.2 82 47.6
Haze_15414 Corylus avellana HOM05D000135 ORTHO05D000203 6.2e-10 67.8 75 46.7
ECA234G2126 Erigeron canadensis HOM05D000135 ORTHO05D000203 8.1e-10 67.4 53 60.4
Manes.13G127700 Manihot esculenta HOM05D000135 ORTHO05D000203 8.1e-10 67.4 75 49.3
Nitab4.5_0000292g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000203 8.1e-10 67.4 50 60.0
Potri.007G042900 Populus trichocarpa HOM05D000135 ORTHO05D000203 8.1e-10 67.4 95 41.1
Actinidia36498 Actinidia chinensis HOM05D000135 ORTHO05D000203 1.4e-09 66.6 82 43.9
CiPaw.01G018900 Carya illinoinensis HOM05D000135 ORTHO05D000203 1.4e-09 66.6 79 43.0
CSS0044479 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000203 1.8e-09 66.2 52 55.8
Cfa004010 Carpinus fangiana HOM05D000135 ORTHO05D000203 1.8e-09 66.2 75 42.7
FAN19G0794 Fragaria x ananassa HOM05D000135 ORTHO05D000203 1.8e-09 66.2 80 43.8
VMungo1215G0656 Vigna mungo HOM05D000135 ORTHO05D000203 4.0e-09 65.1 82 46.3
TPR.G21277 Trifolium pratense HOM05D000135 ORTHO05D000203 9.0e-09 63.9 82 46.3
Atru.chr3.341 Acer truncatum HOM05D000135 ORTHO05D000203 1.2e-08 63.5 82 46.3
CDE04G2253 Ceratophyllum demersum HOM05D002198 ORTHO05D002409 1.5e-08 63.2 76 46.1
Ca_24776_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000203 1.5e-08 63.2 81 43.2
PGR142G3781 Punica granatum HOM05D000135 ORTHO05D000203 1.5e-08 63.2 80 46.2
Glyma.11G056500 Glycine max HOM05D000135 ORTHO05D000203 2.6e-08 62.4 78 43.6
VMungo0251G3415 Vigna mungo HOM05D000135 ORTHO05D000203 2.6e-08 62.4 82 43.9
Dinv39860 Davidia involucrata HOM05D000135 ORTHO05D000203 3.4e-08 62.0 80 40.0
Peaxi162Scf00917g00042 Petunia axillaris HOM05D000135 ORTHO05D000203 4.5e-08 61.6 79 43.0
DCAR_007863 Daucus carota HOM05D000106 ORTHO05D003154 5.8e-08 61.2 68 44.1
CAN.G165.18 Capsicum annuum HOM05D000135 ORTHO05D000203 7.6e-08 60.8 78 39.7
Medtr5g017550 Medicago truncatula HOM05D000135 ORTHO05D000203 7.6e-08 60.8 81 42.0
TWI53G1405 Tripterygium wilfordii HOM05D000135 ORTHO05D000203 7.6e-08 60.8 76 42.1
Ah.02g124280 Amaranthus hybridus HOM05D000135 ORTHO05D000203 1.3e-07 60.1 76 46.1
PGR142G2931 Punica granatum HOM05D000135 ORTHO05D000203 1.3e-07 60.1 81 43.2
arahy.Tifrunner.gnm1.ann1.D3D30P Arachis hypogaea HOM05D000135 ORTHO05D000203 1.7e-07 59.7 69 44.9
ECA238G2850 Erigeron canadensis HOM05D000135 ORTHO05D000203 1.7e-07 59.7 76 43.4
Lj2g0000548 Lotus japonicus HOM05D000135 ORTHO05D000203 1.7e-07 59.7 79 46.8
Glyma.01G185600 Glycine max HOM05D000135 ORTHO05D000203 2.2e-07 59.3 78 43.6
Lalb_Chr16g0378511 Lupinus albus HOM05D000135 ORTHO05D000203 2.2e-07 59.3 90 41.1
Nitab4.5_0006001g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000203 3.8e-07 58.5 69 42.0
arahy.Tifrunner.gnm1.ann1.77Y3FG Arachis hypogaea HOM05D000135 ORTHO05D000203 4.9e-07 58.2 65 44.6
Medtr5g017510 Medicago truncatula HOM05D000135 ORTHO05D000203 6.4e-07 57.8 81 40.7
Medtr5g017560 Medicago truncatula HOM05D000135 ORTHO05D000203 6.4e-07 57.8 81 40.7
MD02G1171100 Malus domestica HOM05D000135 ORTHO05D000203 8.4e-07 57.4 82 35.4
SalBow5G1733 Salvia bowleyana HOM05D000135 ORTHO05D000203 1.1e-06 57.0 75 41.3
SalBow5G5503 Salvia bowleyana HOM05D000135 ORTHO05D000203 1.1e-06 57.0 75 41.3
Eucgr.G01446 Eucalyptus grandis HOM05D000135 ORTHO05D000203 1.4e-06 56.6 34 67.6
Glyma.17G175400 Glycine max HOM05D000135 ORTHO05D000203 1.4e-06 56.6 82 39.0
Nitab4.5_0000728g0020 Nicotiana tabacum HOM05D000135 ORTHO05D000203 1.9e-06 56.2 38 57.9
Glyma.05G085200 Glycine max HOM05D000135 ORTHO05D000203 3.2e-06 55.5 83 41.0
Solyc02g065000.1 Solanum lycopersicum HOM05D000135 ORTHO05D000203 3.2e-06 55.5 38 57.9
Sopen02g015130 Solanum pennellii HOM05D000135 ORTHO05D000203 3.2e-06 55.5 38 57.9
Lsat_1_v5_gn_2_84220 Lactuca sativa HOM05D000135 ORTHO05D000203 5.5e-06 54.7 77 37.7
Phvul.003G244275 Phaseolus vulgaris HOM05D000135 ORTHO05D000203 5.5e-06 54.7 77 40.3
PGSC0003DMG400039532 Solanum tuberosum HOM05D000135 ORTHO05D000203 5.5e-06 54.7 38 57.9
arahy.Tifrunner.gnm1.ann1.JMIG5W Arachis hypogaea HOM05D000135 ORTHO05D000203 7.1e-06 54.3 75 40.0


User provided reference genes

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