Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2918 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1762.3 873 100.0
FvH4_7g24830 Fragaria vesca HOM05D005937 ORTHO05D008151 0.0e+00 1738.8 877 98.7
FAN06G2004 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1738.0 874 98.7
FAN03G2902 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1683.3 882 94.6
RcHm_v2.0_Chr1g0370701 Rosa chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1598.2 875 90.9
FAN10G1632 Fragaria x ananassa HOM05D005937 ORTHO05D008151 0.0e+00 1512.3 886 87.2
MD07G1224900 Malus domestica HOM05D005937 ORTHO05D008151 0.0e+00 1426.0 878 80.4
Prupe.2G253500 Prunus persica HOM05D005937 ORTHO05D008151 0.0e+00 1397.9 875 79.2
Potri.010G185800 Populus trichocarpa HOM05D005937 ORTHO05D008151 0.0e+00 1273.5 843 74.0
Atru.chr12.85 Acer truncatum HOM05D005937 ORTHO05D008151 0.0e+00 1269.6 876 72.8
Haze_17256 Corylus avellana HOM05D005937 ORTHO05D008151 0.0e+00 1268.8 822 75.3
Duzib114G0783 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1256.9 880 70.2
CiPaw.02G194600 Carya illinoinensis HOM05D005937 ORTHO05D008151 0.0e+00 1251.1 844 72.4
CANSAT56G2579 Cannabis sativa HOM05D005937 ORTHO05D008151 0.0e+00 1246.5 887 71.1
Thecc.10G012700 Theobroma cacao HOM05D005937 ORTHO05D008151 0.0e+00 1233.4 880 70.5
Manes.10G010100 Manihot esculenta HOM05D005937 ORTHO05D008151 0.0e+00 1219.5 837 71.1
Ciclev10030686m.g Citrus clementina HOM05D005937 ORTHO05D008151 0.0e+00 1213.7 882 69.3
GSVIVG01032777001 Vitis vinifera HOM05D005937 ORTHO05D008151 0.0e+00 1210.3 850 70.6
Sabra10G0143100 Salix brachista HOM05D005937 ORTHO05D008151 0.0e+00 1209.9 879 68.4
QL08p063536 Quercus lobata HOM05D005937 ORTHO05D008151 0.0e+00 1207.2 878 68.3
TWI09G1402 Tripterygium wilfordii HOM05D005937 ORTHO05D008151 0.0e+00 1203.7 844 70.0
Gorai.011G291300 Gossypium raimondii HOM05D005937 ORTHO05D008151 0.0e+00 1199.9 870 68.0
Eucgr.J00183 Eucalyptus grandis HOM05D005937 ORTHO05D008151 0.0e+00 1195.3 818 70.8
TAR633G1521 Trochodendron aralioides HOM05D005937 ORTHO05D008151 0.0e+00 1192.9 876 68.6
Actinidia00667 Actinidia chinensis HOM05D005937 ORTHO05D008151 0.0e+00 1189.9 874 68.5
Migut.F01477 Erythranthe guttata HOM05D005937 ORTHO05D008151 0.0e+00 1189.1 882 66.7
Gohir.A10G239000 Gossypium hirsutum HOM05D005937 ORTHO05D008151 0.0e+00 1187.6 869 68.0
CSS0046957 Camellia sinensis var. sinensis HOM05D005937 ORTHO05D008151 0.0e+00 1184.9 900 67.6
Hma1.2p1_0523F.1_g172080 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 0.0e+00 1177.5 814 69.4
Rhsim09G0179300 Rhododendron simsii HOM05D005937 ORTHO05D008151 0.0e+00 1171.0 873 67.0
Lalb_Chr23g0277021 Lupinus albus HOM05D005937 ORTHO05D008151 0.0e+00 1168.3 881 65.5
Ca_15144_v3 Cicer arietinum L. HOM05D005937 ORTHO05D008151 0.0e+00 1167.5 820 68.8
Cpa.g.sc19.149 Carica papaya HOM05D005937 ORTHO05D008151 0.0e+00 1166.4 906 66.4
Duzib106G1087 Durio zibethinus HOM05D005937 ORTHO05D008151 0.0e+00 1166.0 878 66.6
Phvul.001G244900 Phaseolus vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1160.2 839 67.7
Nn2g10945 Nelumbo nucifera HOM05D005937 ORTHO05D008151 0.0e+00 1157.9 883 66.0
Glyma.11G231700 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1154.0 819 69.2
Hund15900 Selenicereus undatus HOM05D005937 ORTHO05D008151 0.0e+00 1151.0 820 67.7
ClCG11G006010 Citrullus lanatus HOM05D005937 ORTHO05D008151 0.0e+00 1146.3 818 67.1
AL5G37310 Arabidopsis lyrata HOM05D005937 ORTHO05D008151 0.0e+00 1146.0 881 64.4
Ah.16g103770 Amaranthus hybridus HOM05D005937 ORTHO05D008151 0.0e+00 1144.8 814 66.6
Medtr3g071440 Medicago truncatula HOM05D005937 ORTHO05D008151 0.0e+00 1144.0 873 65.6
CARHR166110 Cardamine hirsuta HOM05D005937 ORTHO05D008151 0.0e+00 1142.1 856 64.8
Solyc06g051080.4 Solanum lycopersicum HOM05D005937 ORTHO05D008151 0.0e+00 1142.1 879 64.7
Nitab4.5_0000058g0250 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1141.3 878 64.1
Sopen06g016900 Solanum pennellii HOM05D005937 ORTHO05D008151 0.0e+00 1139.4 879 64.5
Aa31LG10G10960 Aethionema arabicum HOM05D005937 ORTHO05D008151 0.0e+00 1137.1 871 64.4
Nitab4.5_0000969g0030 Nicotiana tabacum HOM05D005937 ORTHO05D008151 0.0e+00 1135.9 879 63.6
Psat5g130440 Pisum sativum HOM05D005937 ORTHO05D008151 0.0e+00 1135.9 816 67.6
AT3G56040 Arabidopsis thaliana HOM05D005937 ORTHO05D008151 0.0e+00 1134.0 880 63.4
Lj6g0019628 Lotus japonicus HOM05D005937 ORTHO05D008151 0.0e+00 1133.2 842 67.6
Sed0020446 Sechium edule HOM05D005937 ORTHO05D008151 0.0e+00 1132.5 816 66.8
CsaV3_6G001960 Cucumis sativus L. HOM05D005937 ORTHO05D008151 0.0e+00 1130.5 818 66.7
CAN.G19.18 Capsicum annuum HOM05D005937 ORTHO05D008151 0.0e+00 1129.8 816 66.3
arahy.Tifrunner.gnm1.ann1.0WF02T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1127.5 820 66.5
A09p48990 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1126.3 867 64.0
BraA09t40354Z Brassica rapa HOM05D005937 ORTHO05D008151 0.0e+00 1126.3 867 64.0
Thhalv10005783m.g Eutrema salsugineum HOM05D005937 ORTHO05D008151 0.0e+00 1125.9 881 63.7
TPR.G10616 Trifolium pratense HOM05D005937 ORTHO05D008151 0.0e+00 1125.9 817 67.7
VMungo1383G1379 Vigna mungo HOM05D005937 ORTHO05D008151 0.0e+00 1125.5 846 66.5
arahy.Tifrunner.gnm1.ann1.6RBS9T Arachis hypogaea HOM05D005937 ORTHO05D008151 0.0e+00 1124.0 820 66.3
Glyma.18G025500 Glycine max HOM05D005937 ORTHO05D008151 0.0e+00 1123.6 817 67.4
Sp5g06500 Schrenkiella parvula HOM05D005937 ORTHO05D008151 0.0e+00 1122.5 882 63.9
C08p31350 Brassica napus HOM05D005937 ORTHO05D008151 0.0e+00 1118.2 867 63.8
THA.LOC104811372 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1117.1 816 65.9
Carub.0005s2277 Capsella rubella HOM05D005937 ORTHO05D008151 0.0e+00 1115.1 875 62.2
THA.LOC104824329 Tarenaya hassleriana HOM05D005937 ORTHO05D008151 0.0e+00 1113.2 871 62.7
Oeu011112.1 Olea europaea HOM05D005937 ORTHO05D008151 0.0e+00 1112.8 904 61.7
EL10Ac2g04871 Beta vulgaris HOM05D005937 ORTHO05D008151 0.0e+00 1111.7 863 62.1
Cfa001293 Carpinus fangiana HOM05D005937 ORTHO05D008151 0.0e+00 1109.4 695 76.5
vmacro10023 Vaccinium macrocarpon HOM05D005937 ORTHO05D008151 0.0e+00 1109.4 913 63.4
HanXRQChr07g0203141 Helianthus annuus HOM05D005937 ORTHO05D008151 0.0e+00 1097.4 876 63.6
Aqoxy4G02431 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 0.0e+00 1096.3 816 65.0
Lsat_1_v5_gn_2_123720 Lactuca sativa HOM05D005937 ORTHO05D008151 0.0e+00 1095.9 824 65.3
Lj1C959G18 Lonicera japonica HOM05D005937 ORTHO05D008151 0.0e+00 1087.8 750 70.5
MD01G1156200 Malus domestica HOM05D005937 ORTHO05D008151 0.0e+00 1087.8 699 76.4
ECA238G3710 Erigeron canadensis HOM05D005937 ORTHO05D008151 0.0e+00 1080.5 822 65.9
PGR044G1548 Punica granatum HOM05D005937 ORTHO05D008151 0.0e+00 1080.1 873 63.6
AUR62012278 Chenopodium quinoa HOM05D005937 ORTHO05D008151 5.4e-311 1070.8 816 62.9
Dinv21757 Davidia involucrata HOM05D005937 ORTHO05D008151 5.9e-310 1067.4 889 62.5
PSO017G4998 Papaver somniferum HOM05D005937 ORTHO05D008151 9.4e-308 1060.1 822 63.1
PSO170G3027 Papaver somniferum HOM05D005937 ORTHO05D008151 1.6e-307 1059.3 823 63.2
DCAR_024814 Daucus carota HOM05D005937 ORTHO05D008151 2.3e-306 1055.4 798 65.2
Gohir.D10G250900 Gossypium hirsutum HOM05D005937 ORTHO05D008151 3.0e-298 1028.5 742 69.4
unitig_60.g25670 Utricularia gibba HOM05D005937 ORTHO05D008151 5.2e-298 1027.7 831 60.9
ATR0174G021 Amborella trichopoda HOM05D005937 ORTHO05D008151 2.2e-296 1022.3 864 58.0
Peaxi162Scf00284g00620 Petunia axillaris HOM05D005937 ORTHO05D008151 4.7e-291 1004.6 880 59.0
AUR62022920 Chenopodium quinoa HOM05D005937 ORTHO05D008151 3.0e-290 1001.9 738 64.2
Os05g0468600 Oryza sativa ssp. japonica HOM05D005937 ORTHO05D008151 4.0e-290 1001.5 801 60.3
Cc02_g06180 Coffea canephora HOM05D005937 ORTHO05D008151 2.7e-286 988.8 644 72.0
Zm00001eb351780 Zea mays HOM05D005937 ORTHO05D008151 1.9e-284 982.6 895 55.8
COL.COLO4_25772 Corchorus olitorius HOM05D005937 ORTHO05D008151 7.5e-281 970.7 786 62.0
MELO3C008313.2 Cucumis melo HOM05D005937 ORTHO05D008151 3.5e-278 961.8 710 66.9
MBI15_g40751_MAGBIO Magnolia biondii HOM05D005937 ORTHO05D008151 3.5e-278 961.8 887 56.9
Sc10g0002520 Simmondsia chinensis HOM05D005937 ORTHO05D008151 4.3e-260 901.7 695 66.3
SGA_v2.0_scaffold395G50730 Striga asiatica HOM05D005937 ORTHO05D008151 1.7e-245 853.2 678 64.2
AagrBONN_evm.TU.Sc2ySwM_368.2798 Anthoceros agrestis HOM05D005937 ORTHO05D008151 5.1e-245 851.7 826 51.7
Mapoly0007s0127 Marchantia polymorpha HOM05D005937 ORTHO05D008151 5.1e-237 825.1 858 47.8
SMO141G0067 Selaginella moellendorffii HOM05D005937 ORTHO05D008151 5.1e-229 798.5 740 53.1
Pp3c22_15610 Physcomitrium patens HOM05D005937 ORTHO05D008151 5.7e-228 795.0 879 47.0
HPP92_007567 Vanilla planifolia HOM05D005937 ORTHO05D008151 1.5e-204 717.2 823 48.6
CBR_g61489 Chara braunii HOM05D005937 ORTHO05D008151 2.2e-192 676.8 568 55.1
Actinidia00964 Actinidia chinensis HOM05D005937 ORTHO05D008151 8.3e-187 658.3 481 68.0
Hma1.2p1_0523F.1_g172070 Hydrangea macrophylla HOM05D005937 ORTHO05D008151 5.4e-186 655.6 516 64.7
PRCOL_00004696 Prasinoderma coloniale HOM05D005937 ORTHO05D008151 2.0e-161 573.9 817 40.1
Cre12.g554250 Chlamydomonas reinhardtii HOM05D005937 ORTHO05D008151 5.4e-154 549.3 941 37.1
CDE04G2743 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 4.7e-150 536.2 547 53.9
HPP92_007578 Vanilla planifolia HOM05D005937 ORTHO05D008151 1.6e-121 441.4 400 55.0
RhsimUnG0153700 Rhododendron simsii HOM05D005937 ORTHO05D008151 2.4e-117 427.6 304 70.1
BcaB01g00040 Brassica carinata HOM05D005937 ORTHO05D008151 2.8e-110 404.1 388 57.5
Rhsim12G0073000 Rhododendron simsii HOM05D005937 ORTHO05D008151 4.8e-110 403.3 303 67.3
SEGI_34891 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 4.6e-97 360.1 244 69.7
CDE04G2646 Ceratophyllum demersum HOM05D005937 ORTHO05D008151 4.3e-95 353.6 246 65.9
Aqoxy1G01260 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.4e-90 338.6 192 79.7
Aqoxy2G01148 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.9e-90 338.2 188 80.9
Aqoxy4G01451 Aquilegia oxysepala HOM05D005937 ORTHO05D008151 1.2e-89 335.5 186 81.2
MCO05G015 Micromonas commoda HOM05D005937 ORTHO05D008151 1.0e-80 305.8 415 38.3
HPP92_007579 Vanilla planifolia HOM05D005937 ORTHO05D008151 3.7e-78 297.4 217 60.4
BolC8t50756H Brassica oleracea HOM05D005937 ORTHO05D008151 1.0e-75 289.3 203 61.6
Ah.00g001390 Amaranthus hybridus HOM05D005937 ORTHO05D008151 8.0e-49 199.9 147 59.2
SEGI_09306 Sequoiadendron giganteum HOM05D005937 ORTHO05D008151 4.6e-44 184.1 136 56.6
vmacro09901 Vaccinium macrocarpon HOM05D003975 ORTHO05D009762 6.6e-27 127.1 165 41.8
Aqoxy4G01461 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 2.5e-26 125.2 174 43.7
FvH4_1g28571 Fragaria vesca HOM05D028679 ORTHO05D046132 5.1e-19 100.9 72 79.2
Hund15853 Selenicereus undatus HOM05D005937 ORTHO05D026713 1.2e-12 79.7 107 43.0
Aqoxy4G00767 Aquilegia oxysepala HOM05D005937 ORTHO05D026713 3.3e-10 71.6 92 47.8
Rhsim12G0072900 Rhododendron simsii HOM05D005937 ORTHO05D008151 3.3e-10 71.6 53 71.7
FAN12G0070 Fragaria x ananassa HOM05D028679 ORTHO05D046132 4.3e-10 71.2 51 78.4
MD01G1156300 Malus domestica HOM05D005937 ORTHO05D248608 1.5e-07 62.8 72 56.9
SEGI_37602 Sequoiadendron giganteum HOM05D005937 ORTHO05D026713 2.6e-07 62.0 179 29.6
Actinidia04126 Actinidia chinensis HOM05D005937 ORTHO05D019459 2.9e-06 58.5 73 49.3


User provided reference genes

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