Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.6e-94 347.4 184 100.0
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.1e-55 219.5 132 92.4
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.1e-55 219.5 132 92.4
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 1.0e-54 217.2 132 91.7
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.0e-54 217.2 132 91.7
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.1e-54 214.9 132 90.9
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 4.3e-53 211.8 132 88.6
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.6e-53 210.7 132 90.9
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.5e-50 203.4 134 85.1
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 1.3e-49 200.3 132 84.1
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 1.8e-46 189.9 136 77.9
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 1.5e-45 186.8 136 76.5
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 3.4e-42 175.6 133 75.2
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 1.3e-41 173.7 133 73.7
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 1.7e-41 173.3 133 73.7
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 1.1e-40 170.6 133 72.2
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 1.4e-40 170.2 133 72.9
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 3.2e-40 169.1 133 72.2
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 4.2e-40 168.7 133 71.4
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 7.1e-40 167.9 132 70.5
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 7.1e-40 167.9 132 70.5
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 7.1e-40 167.9 138 70.3
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 2.1e-39 166.4 133 70.7
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 1.0e-38 164.1 133 72.2
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 1.8e-38 163.3 133 72.2
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.3e-38 162.9 135 70.4
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 5.1e-38 161.8 137 70.8
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 8.7e-38 161.0 132 68.2
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 1.1e-37 160.6 132 72.0
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 1.1e-37 160.6 136 66.2
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 2.5e-37 159.5 135 67.4
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 5.7e-37 158.3 133 69.2
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 7.4e-37 157.9 133 69.2
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.3e-36 157.1 135 68.1
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 1.3e-36 157.1 135 68.1
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.6e-36 156.8 133 68.4
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 1.6e-36 156.8 133 69.9
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 2.1e-36 156.4 128 69.5
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 2.8e-36 156.0 133 69.2
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 3.7e-36 155.6 133 69.2
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 8.2e-36 154.5 134 66.4
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 1.1e-35 154.1 132 68.2
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 1.4e-35 153.7 132 65.9
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 1.8e-35 153.3 128 68.0
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 2.4e-35 152.9 132 65.9
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 2.4e-35 152.9 132 65.2
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 2.4e-35 152.9 165 58.8
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 3.1e-35 152.5 134 65.7
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 4.1e-35 152.1 133 66.2
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 4.1e-35 152.1 132 65.9
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 4.1e-35 152.1 133 67.7
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 5.3e-35 151.8 132 65.9
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 6.9e-35 151.4 132 66.7
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 6.9e-35 151.4 132 63.6
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 1.2e-34 150.6 133 65.4
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 1.5e-34 150.2 132 63.6
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 2.0e-34 149.8 128 67.2
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 2.0e-34 149.8 132 66.7
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 2.6e-34 149.4 134 64.2
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 2.6e-34 149.4 132 65.2
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 4.5e-34 148.7 133 64.7
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 1.0e-33 147.5 133 64.7
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 1.0e-33 147.5 127 66.1
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 1.3e-33 147.1 133 63.9
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 1.7e-33 146.7 133 63.9
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 1.7e-33 146.7 133 63.9
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 3.8e-33 145.6 133 64.7
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 3.8e-33 145.6 131 63.4
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 5.0e-33 145.2 130 66.2
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 8.4e-33 144.4 133 62.4
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 8.4e-33 144.4 133 62.4
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 8.4e-33 144.4 133 62.4
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 8.4e-33 144.4 133 62.4
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 8.4e-33 144.4 133 62.4
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 8.4e-33 144.4 133 62.4
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 1.1e-32 144.1 134 63.4
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 1.4e-32 143.7 133 62.4
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 1.4e-32 143.7 133 63.2
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 2.5e-32 142.9 133 63.2
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 3.2e-32 142.5 132 62.1
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 4.2e-32 142.1 128 65.6
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 5.5e-32 141.7 133 63.9
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 5.5e-32 141.7 133 61.7
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 7.2e-32 141.4 133 62.4
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 9.3e-32 141.0 133 60.2
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 9.3e-32 141.0 132 61.4
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 9.3e-32 141.0 126 63.5
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.2e-31 140.6 127 63.8
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 1.6e-31 140.2 133 62.4
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 2.1e-31 139.8 133 63.2
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 2.7e-31 139.4 132 62.1
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 4.6e-31 138.7 133 60.9
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 4.6e-31 138.7 133 60.9
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 4.6e-31 138.7 133 60.9
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 7.9e-31 137.9 128 64.1
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 1.0e-30 137.5 133 58.6
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 3.9e-30 135.6 127 61.4
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 5.1e-30 135.2 133 59.4
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 8.7e-30 134.4 131 58.0
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 1.1e-29 134.0 136 59.6
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 2.2e-28 129.8 133 54.9
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 2.2e-28 129.8 132 56.1
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 3.7e-28 129.0 133 55.6
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 3.1e-27 125.9 134 59.7
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 5.3e-27 125.2 133 56.4
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 9.0e-27 124.4 134 56.7
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 2.2e-25 119.8 136 53.7
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 6.5e-25 118.2 133 54.1
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 1.2e-23 114.0 103 62.1
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 2.1e-23 113.2 131 57.3
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 2.7e-23 112.8 132 50.8
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 7.9e-23 111.3 148 48.6
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 3.0e-22 109.4 132 54.5
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 1.3e-20 104.0 131 51.9
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 1.3e-20 104.0 99 61.6
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 6.3e-20 101.7 154 44.2
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 3.1e-19 99.4 127 51.2
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 4.5e-18 95.5 130 46.2
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 2.2e-17 93.2 48 95.8
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.2e-17 93.2 48 95.8
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.8e-17 92.4 148 41.9
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.2e-16 88.2 48 89.6
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 3.0e-14 82.8 48 85.4
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 4.8e-12 75.5 62 62.9
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 6.3e-12 75.1 88 50.0
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 2.4e-11 73.2 99 45.5
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 4.1e-11 72.4 43 81.4
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 2.6e-10 69.7 42 78.6
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 1.3e-09 67.4 43 86.0
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 9.4e-08 61.2 38 76.3


User provided reference genes

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