Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.8e-112 407.1 206 100.0
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 3.5e-104 381.7 213 93.0
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.3e-102 374.0 200 95.0
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 3.1e-100 368.6 206 92.2
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 1.7e-98 362.8 201 91.0
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 3.5e-80 302.0 210 76.2
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 8.7e-79 297.4 210 75.7
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 2.4e-76 289.3 205 74.1
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 1.5e-75 286.6 208 72.6
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 5.9e-75 284.6 208 72.1
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.0e-74 283.9 208 73.1
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 1.7e-74 283.1 200 74.0
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 2.9e-74 282.3 208 70.7
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 6.5e-74 281.2 210 72.9
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 8.5e-74 280.8 199 73.9
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 8.5e-74 280.8 211 70.6
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 1.4e-73 280.0 207 71.0
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 1.9e-73 279.6 145 93.1
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.9e-73 279.6 145 93.1
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 2.5e-73 279.3 213 70.4
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 7.2e-73 277.7 199 73.4
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 9.3e-73 277.3 205 71.7
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 1.2e-72 276.9 212 68.4
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.1e-72 276.2 145 92.4
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 7.9e-72 274.2 201 71.1
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 1.3e-71 273.5 210 70.5
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 2.3e-71 272.7 202 71.8
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 3.0e-71 272.3 205 71.7
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 3.0e-71 272.3 211 69.7
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 3.0e-71 272.3 205 70.2
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 3.9e-71 271.9 213 69.5
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 6.7e-71 271.2 205 69.3
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 6.7e-71 271.2 206 71.8
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 8.7e-71 270.8 211 69.7
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 3.3e-70 268.9 214 68.2
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 4.3e-70 268.5 207 69.1
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 4.3e-70 268.5 189 73.0
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 4.3e-70 268.5 199 70.4
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 5.7e-70 268.1 193 73.1
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 1.3e-69 266.9 207 69.6
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 1.6e-69 266.5 205 68.8
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 2.2e-69 266.2 207 68.6
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 2.8e-69 265.8 204 71.6
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 4.8e-69 265.0 205 70.7
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.3e-69 264.6 147 89.1
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 1.1e-68 263.8 205 68.3
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 3.1e-68 262.3 195 69.2
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 6.9e-68 261.2 208 69.2
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 1.5e-67 260.0 209 68.4
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.5e-67 260.0 208 67.3
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 2.0e-67 259.6 206 68.9
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 2.0e-67 259.6 208 67.3
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 4.5e-67 258.5 197 68.5
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 5.9e-67 258.1 196 69.9
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 2.2e-66 256.1 185 71.4
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 5.0e-66 255.0 205 68.3
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 6.5e-66 254.6 214 65.0
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 1.4e-65 253.4 207 68.6
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 2.5e-65 252.7 205 66.8
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 4.2e-65 251.9 205 65.9
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 7.2e-65 251.1 186 69.9
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 1.2e-64 250.4 205 67.3
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 2.1e-64 249.6 186 69.4
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 2.7e-64 249.2 202 67.8
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 3.6e-64 248.8 202 67.8
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 4.6e-64 248.4 208 66.8
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 4.6e-64 248.4 210 64.8
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 6.1e-64 248.1 192 68.2
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 1.0e-63 247.3 204 67.2
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 1.4e-63 246.9 194 67.0
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.8e-63 246.5 196 67.3
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 2.3e-63 246.1 200 67.5
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 5.1e-63 245.0 213 64.8
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.5e-62 243.4 190 68.9
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 1.5e-62 243.4 202 67.8
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 4.4e-62 241.9 200 64.5
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 4.4e-62 241.9 200 65.5
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 4.4e-62 241.9 200 64.5
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 4.4e-62 241.9 195 66.2
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 7.4e-62 241.1 211 63.0
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 7.4e-62 241.1 204 64.2
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 1.3e-61 240.4 208 63.0
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 3.7e-61 238.8 200 63.5
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 4.8e-61 238.4 185 68.6
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 6.3e-61 238.0 210 64.3
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 8.2e-61 237.7 188 64.4
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 1.1e-60 237.3 208 64.9
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 2.4e-60 236.1 194 64.9
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 6.9e-60 234.6 210 63.8
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 2.0e-59 233.0 209 61.7
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 2.0e-59 233.0 196 65.8
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 4.5e-59 231.9 204 64.7
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 5.9e-59 231.5 205 61.0
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.0e-58 230.7 196 64.3
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.7e-58 229.9 196 64.3
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 2.2e-58 229.6 188 64.9
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 2.9e-58 229.2 206 62.1
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 5.0e-58 228.4 210 65.7
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 8.5e-58 227.6 194 67.0
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 1.1e-57 227.3 205 63.4
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 3.6e-56 222.2 209 60.8
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 3.6e-56 222.2 205 62.4
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 1.4e-55 220.3 159 68.6
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 5.2e-55 218.4 190 63.7
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 8.8e-55 217.6 127 80.3
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 1.1e-54 217.2 156 70.5
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 2.0e-54 216.5 143 73.4
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 6.3e-53 211.5 156 73.1
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 6.3e-53 211.5 161 69.6
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 1.8e-52 209.9 116 81.0
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 2.0e-51 206.5 196 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 1.1e-49 200.7 137 70.8
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 1.2e-48 197.2 198 57.1
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 6.1e-48 194.9 159 65.4
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 2.3e-47 193.0 204 55.4
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 4.8e-45 185.3 161 65.2
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 4.8e-45 185.3 107 81.3
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 4.8e-45 185.3 98 88.8
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 7.0e-44 181.4 90 91.1
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 6.5e-34 148.3 82 80.5
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.8e-32 142.9 212 45.8
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 1.4e-28 130.6 126 60.3
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 1.8e-28 130.2 101 55.4
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 4.1e-28 129.0 132 59.1
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 1.6e-24 117.1 59 89.8
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 1.8e-23 113.6 93 53.8
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 3.7e-21 105.9 210 41.9
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 2.4e-20 103.2 128 46.9
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 2.3e-18 96.7 56 85.7
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 5.6e-17 92.0 83 55.4
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.8e-14 82.0 102 52.9
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 7.0e-12 75.1 121 38.8
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 6.6e-10 68.6 82 46.3
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 9.5e-09 64.7 34 79.4
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 1.5e-06 57.4 92 40.2
Dinv07271 Davidia involucrata HOM05D005916 ORTHO05D007168 7.5e-06 55.1 34 70.6


User provided reference genes

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