Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.1e-311 1072.4 539 100.0
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.9e-296 1020.8 548 94.5
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.4e-292 1007.7 548 93.4
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 7.6e-292 1006.5 548 93.1
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 3.8e-291 1004.2 548 92.7
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 9.0e-285 983.0 548 89.8
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 1.2e-231 806.6 551 73.7
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 9.2e-221 770.4 552 72.5
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 7.3e-210 734.2 561 67.4
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 8.7e-203 710.7 556 65.5
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 4.3e-202 708.4 554 65.0
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 1.4e-200 703.4 557 65.0
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 7.6e-199 697.6 556 63.8
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 7.6e-199 697.6 554 63.7
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 5.4e-197 691.4 556 64.7
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 1.0e-195 687.2 554 63.9
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 4.3e-194 681.8 555 63.8
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 5.6e-194 681.4 580 61.9
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 9.6e-194 680.6 556 63.7
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 1.3e-193 680.2 560 62.9
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 3.6e-193 678.7 558 65.4
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.4e-192 676.0 557 63.6
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 2.0e-191 672.9 559 62.8
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 3.4e-191 672.2 553 63.5
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 5.8e-191 671.4 554 61.6
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 9.9e-191 670.6 556 62.1
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 3.8e-190 668.7 555 63.1
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 8.4e-190 667.5 555 61.6
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.4e-189 666.8 557 61.0
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 3.2e-189 665.6 556 61.0
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 7.1e-189 664.5 556 61.3
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.6e-188 663.3 540 64.6
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 1.0e-187 660.6 555 62.0
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.3e-187 660.2 558 60.9
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 3.0e-187 659.1 560 60.7
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 5.1e-187 658.3 555 60.4
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 5.1e-187 658.3 558 60.6
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 6.7e-187 657.9 558 62.5
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 1.9e-186 656.4 628 55.6
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 5.6e-186 654.8 576 59.9
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 2.1e-185 652.9 557 60.7
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 1.1e-184 650.6 556 59.7
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 4.0e-184 648.7 554 60.3
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 6.9e-184 647.9 559 59.2
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 1.2e-183 647.1 557 58.7
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 1.5e-183 646.7 564 59.8
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 7.6e-183 644.4 590 58.1
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 9.9e-183 644.0 564 59.4
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 1.3e-182 643.7 553 60.4
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.2e-182 642.9 559 59.2
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 2.9e-182 642.5 557 58.3
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 2.9e-182 642.5 557 60.0
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 3.8e-182 642.1 559 58.7
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 1.4e-181 640.2 559 59.0
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 1.9e-181 639.8 532 62.6
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 7.1e-181 637.9 555 59.8
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 1.6e-180 636.7 555 59.8
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 2.7e-180 636.0 554 59.2
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 7.9e-180 634.4 549 58.7
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 1.3e-179 633.6 556 59.2
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 2.3e-179 632.9 553 59.3
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 2.3e-179 632.9 574 57.8
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 3.0e-179 632.5 561 58.6
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 3.9e-179 632.1 555 59.6
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 1.9e-178 629.8 554 59.4
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 3.3e-178 629.0 558 58.1
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 4.3e-178 628.6 554 59.0
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 5.3e-176 621.7 553 59.9
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 6.9e-176 621.3 557 58.0
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 6.9e-176 621.3 558 57.9
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 5.8e-175 618.2 559 58.7
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.1e-173 614.0 556 58.8
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.2e-172 610.5 593 54.3
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 2.1e-172 609.8 555 57.8
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 3.5e-172 609.0 557 59.2
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 1.8e-171 606.7 553 58.8
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 3.0e-171 605.9 462 66.5
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 3.3e-170 602.4 572 55.9
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 7.4e-170 601.3 558 57.0
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 2.2e-169 599.7 557 55.3
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 4.8e-169 598.6 551 57.2
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 6.3e-169 598.2 406 74.9
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 1.4e-168 597.0 556 57.0
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 6.9e-168 594.7 554 57.2
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 1.2e-167 594.0 557 56.2
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 2.6e-167 592.8 559 56.2
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 3.4e-167 592.4 555 58.2
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 4.5e-167 592.0 555 56.9
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 5.9e-167 591.7 550 55.3
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 7.7e-167 591.3 555 57.3
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 2.9e-166 589.3 555 56.8
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 5.5e-165 585.1 558 56.1
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 5.5e-165 585.1 558 56.1
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 3.0e-163 579.3 557 55.8
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 2.5e-162 576.2 557 56.2
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 4.8e-161 572.0 555 55.3
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 3.1e-160 569.3 555 55.0
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 5.9e-159 565.1 556 54.5
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 5.9e-151 538.5 555 53.0
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 3.8e-150 535.8 464 60.8
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 1.8e-144 516.9 567 49.4
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 4.1e-144 515.8 566 49.8
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 4.5e-143 512.3 558 51.4
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 2.2e-142 510.0 495 54.9
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 2.5e-141 506.5 512 53.3
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 3.6e-140 502.7 513 52.8
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 8.0e-140 501.5 382 67.8
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 2.8e-137 493.0 554 50.0
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 7.7e-127 458.4 557 46.0
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 4.7e-124 449.1 464 52.6
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 1.0e-123 448.0 580 44.0
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 6.6e-110 402.1 568 42.3
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 1.1e-107 394.8 358 55.9
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 1.6e-95 354.4 301 63.8
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.0e-94 351.7 304 59.9
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 5.1e-94 349.4 540 41.3
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.1e-92 344.0 239 74.1
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 2.8e-92 343.6 370 54.3
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.8e-91 340.9 556 38.8
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 5.8e-90 335.9 618 36.6
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 1.9e-88 330.9 573 36.5
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.1e-83 315.1 553 37.8
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 4.5e-74 283.1 211 64.9
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 4.3e-69 266.5 371 43.9
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 1.9e-61 241.1 384 41.4
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 4.5e-58 229.9 201 60.2
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 8.4e-57 225.7 270 46.3
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 1.1e-56 225.3 569 31.8
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 3.0e-54 217.2 287 47.0
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 1.8e-46 191.4 131 67.9
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 2.4e-43 181.0 539 30.2
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 2.5e-40 171.0 279 38.0
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 6.1e-39 166.4 132 62.1
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 5.1e-38 163.3 127 63.8
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 3.8e-33 147.1 385 31.4
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 7.2e-32 142.9 130 50.0
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 5.0e-25 120.2 142 42.3
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 4.0e-22 110.5 89 59.6
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 6.3e-20 103.2 67 65.7
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 2.0e-18 98.2 94 53.2
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 4.5e-18 97.1 81 63.0
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 2.2e-17 94.7 77 61.0
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 6.1e-15 86.7 75 57.3
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 5.2e-14 83.6 646 21.7
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.2e-10 72.4 84 44.0
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 3.5e-10 70.9 57 59.6
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 1.1e-08 65.9 42 69.0
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 3.3e-08 64.3 34 73.5
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 3.3e-08 64.3 34 73.5
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 1.6e-07 62.0 33 72.7
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 2.1e-07 61.6 123 34.1
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 2.1e-07 61.6 32 75.0
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 1.8e-06 58.5 123 33.3


User provided reference genes

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