Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2496 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.3e-192 676.8 489 100.0
FAN03G1939 Fragaria x ananassa HOM05D004242 ORTHO05D004349 4.6e-171 605.1 489 87.1
FAN10G0542 Fragaria x ananassa HOM05D004242 ORTHO05D004349 1.1e-161 573.9 490 81.2
FAN06G4791 Fragaria x ananassa HOM05D004242 ORTHO05D004349 9.7e-161 570.9 489 84.9
FvH4_7g17260 Fragaria vesca HOM05D004242 ORTHO05D004349 4.8e-160 568.5 489 84.7
FAN10G1700 Fragaria x ananassa HOM05D004242 ORTHO05D004349 7.7e-158 561.2 490 80.4
FAN06G2582 Fragaria x ananassa HOM05D004242 ORTHO05D004349 2.9e-157 559.3 489 84.0
FAN17G2081 Fragaria x ananassa HOM05D004242 ORTHO05D004349 5.6e-132 475.3 494 69.4
FAN22G2040 Fragaria x ananassa HOM05D004242 ORTHO05D004349 3.5e-126 456.1 381 78.2
FAN12G0333 Fragaria x ananassa HOM05D004242 ORTHO05D004349 8.9e-114 414.8 494 70.6
FvH4_4g01200 Fragaria vesca HOM05D004242 ORTHO05D004349 4.9e-112 409.1 496 69.0
RcHm_v2.0_Chr1g0360631 Rosa chinensis HOM05D004242 ORTHO05D004349 9.9e-105 384.8 557 59.6
RcHm_v2.0_Chr3g0484701 Rosa chinensis HOM05D004242 ORTHO05D004349 1.7e-104 384.0 332 65.7
Prupe.2G193900 Prunus persica HOM05D004242 ORTHO05D004349 6.3e-43 179.5 288 51.0
VMungo0540G1056 Vigna mungo HOM05D004242 ORTHO05D004349 5.3e-42 176.4 324 39.8
Lj1g0015234 Lotus japonicus HOM05D004242 ORTHO05D004349 1.2e-41 175.3 318 45.3
Ciclev10019915m.g Citrus clementina HOM05D004242 ORTHO05D004349 5.5e-39 166.4 283 45.9
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 3.0e-37 160.6 278 46.4
Gorai.007G111100 Gossypium raimondii HOM05D004242 ORTHO05D004349 4.0e-37 160.2 249 45.8
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 6.7e-37 159.5 288 40.3
Gohir.D11G103800 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.2e-36 158.7 249 45.4
Thecc.01G336900 Theobroma cacao HOM05D004242 ORTHO05D004349 2.6e-36 157.5 257 44.4
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 1.3e-35 155.2 249 45.0
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 1.7e-35 154.8 281 44.5
Glyma.19G258400 Glycine max HOM05D004242 ORTHO05D004349 2.2e-35 154.5 264 40.2
arahy.Tifrunner.gnm1.ann1.16GZH2 Arachis hypogaea HOM05D004242 ORTHO05D004349 8.2e-35 152.5 230 45.7
TPR.G4684 Trifolium pratense HOM05D004242 ORTHO05D004349 8.2e-35 152.5 274 40.9
Manes.01G267100 Manihot esculenta HOM05D004242 ORTHO05D004349 1.4e-34 151.8 277 45.1
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 7.7e-33 146.0 229 47.2
arahy.Tifrunner.gnm1.ann1.1EJ222 Arachis hypogaea HOM05D004242 ORTHO05D004349 1.0e-32 145.6 265 43.0
Medtr7g117980 Medicago truncatula HOM05D004242 ORTHO05D004349 1.0e-32 145.6 287 39.4
Ca_09531_v3 Cicer arietinum L. HOM05D004242 ORTHO05D004349 5.0e-32 143.3 262 38.9
Cpa.g.sc144.11 Carica papaya HOM05D004242 ORTHO05D004349 1.9e-31 141.4 273 40.3
Potri.002G175400 Populus trichocarpa HOM05D004242 ORTHO05D004349 4.2e-31 140.2 260 45.8
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 5.5e-31 139.8 264 44.7
Glyma.03G259500 Glycine max HOM05D004242 ORTHO05D004349 9.4e-31 139.0 298 38.3
Potri.014G102466 Populus trichocarpa HOM05D004242 ORTHO05D004349 2.7e-30 137.5 274 44.2
Gohir.A07G135500 Gossypium hirsutum HOM05D004242 ORTHO05D004349 3.0e-29 134.0 244 41.0
TWI14G0118 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 5.2e-29 133.3 217 42.9
Gohir.D07G140400 Gossypium hirsutum HOM05D004242 ORTHO05D004349 6.8e-29 132.9 252 42.5
Lalb_Chr15g0076401 Lupinus albus HOM05D004242 ORTHO05D004349 8.8e-29 132.5 280 37.1
Rhsim07G0001600 Rhododendron simsii HOM05D004242 ORTHO05D004349 2.0e-28 131.3 246 43.1
Actinidia25370 Actinidia chinensis HOM05D004242 ORTHO05D004349 3.7e-27 127.1 267 39.0
Gorai.001G152400 Gossypium raimondii HOM05D004242 ORTHO05D004349 3.7e-27 127.1 287 39.0
TWI59G0661 Tripterygium wilfordii HOM05D004242 ORTHO05D004349 4.8e-27 126.7 221 39.8
Manes.05G019100 Manihot esculenta HOM05D004242 ORTHO05D004349 8.3e-27 125.9 271 39.9
Cfa003761 Carpinus fangiana HOM05D004242 ORTHO05D004349 1.1e-26 125.6 234 44.9
Psat3g001320 Pisum sativum HOM05D004242 ORTHO05D004349 4.1e-26 123.6 279 36.2
Atru.chr5.733 Acer truncatum HOM05D004242 ORTHO05D004349 2.9e-24 117.5 289 39.8
TAR339G0002 Trochodendron aralioides HOM05D004242 ORTHO05D004349 5.0e-24 116.7 269 41.6
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 6.5e-24 116.3 495 35.4
Ah.05g179200 Amaranthus hybridus HOM05D004242 ORTHO05D004349 9.5e-23 112.5 263 37.6
Eucgr.D02643 Eucalyptus grandis HOM05D004242 ORTHO05D004349 1.6e-22 111.7 217 40.1
Lalb_Chr04g0261391 Lupinus albus HOM05D004242 ORTHO05D004349 1.6e-22 111.7 142 42.3
CSS0005133 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.6e-22 110.5 232 40.1
CSS0009998 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.6e-22 110.5 232 40.1
Haze_15699 Corylus avellana HOM05D004242 ORTHO05D004349 6.1e-22 109.8 504 38.1
SGA_v2.0_scaffold98G29435 Striga asiatica HOM05D004242 ORTHO05D004349 1.0e-21 109.0 244 37.7
PGSC0003DMG400007374 Solanum tuberosum HOM05D004242 ORTHO05D004349 3.0e-21 107.5 301 33.6
CAN.G211.7 Capsicum annuum HOM05D004242 ORTHO05D004349 4.0e-21 107.1 278 33.8
Oeu004972.1 Olea europaea HOM05D004242 ORTHO05D004349 3.4e-20 104.0 274 36.9
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 9.8e-20 102.4 278 33.8
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 9.8e-20 102.4 247 39.7
CSS0040523 Camellia sinensis var. sinensis HOM05D004242 ORTHO05D004349 3.7e-19 100.5 227 34.4
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 3.7e-19 100.5 168 40.5
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 4.9e-19 100.1 258 34.5
ClCG06G002780 Citrullus lanatus HOM05D004242 ORTHO05D004349 8.3e-19 99.4 273 33.7
THA.LOC104817612 Tarenaya hassleriana HOM05D004242 ORTHO05D004349 8.3e-19 99.4 263 39.2
Peaxi162Scf00014g00294 Petunia axillaris HOM05D004242 ORTHO05D004349 1.1e-18 99.0 323 32.5
CiPaw.02G042800 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.4e-18 98.6 264 36.0
Sopen08g021310 Solanum pennellii HOM05D004242 ORTHO05D004349 1.4e-18 98.6 262 35.5
MSTRG.28279 Avicennia marina HOM05D004242 ORTHO05D004349 3.1e-18 97.4 244 36.5
DCAR_002987 Daucus carota HOM05D004242 ORTHO05D004349 3.1e-18 97.4 250 38.0
EL10Ac1g00218 Beta vulgaris HOM05D004242 ORTHO05D004349 4.1e-18 97.1 216 38.9
BraA05t19116Z Brassica rapa HOM05D004242 ORTHO05D004349 1.6e-17 95.1 274 34.7
Nitab4.5_0005697g0010 Nicotiana tabacum HOM05D004242 ORTHO05D004349 1.6e-17 95.1 279 33.7
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 1.6e-17 95.1 281 35.2
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 2.7e-17 94.4 233 36.9
AT2G46630 Arabidopsis thaliana HOM05D004242 ORTHO05D004349 4.5e-17 93.6 250 38.8
AL4G46060 Arabidopsis lyrata HOM05D004242 ORTHO05D004349 7.8e-17 92.8 245 33.9
C04p72290 Brassica napus HOM05D004242 ORTHO05D004349 7.8e-17 92.8 262 35.9
BolC4t28717H Brassica oleracea HOM05D004242 ORTHO05D004349 7.8e-17 92.8 262 35.9
BcaC02g07046 Brassica carinata HOM05D004242 ORTHO05D004349 1.3e-16 92.0 181 37.6
BcaC02g12659 Brassica carinata HOM05D004242 ORTHO05D004349 1.7e-16 91.7 271 34.3
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.7e-16 91.7 236 35.6
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 2.3e-16 91.3 255 35.7
Solyc08g067370.1 Solanum lycopersicum HOM05D004242 ORTHO05D004349 2.3e-16 91.3 483 34.0
BcaC02g12660 Brassica carinata HOM05D004242 ORTHO05D004349 2.9e-16 90.9 288 31.6
C04p01320 Brassica napus HOM05D004242 ORTHO05D004349 2.9e-16 90.9 288 31.6
Carub.0004s2934 Capsella rubella HOM05D004242 ORTHO05D004349 2.9e-16 90.9 236 34.3
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 2.9e-16 90.9 271 34.7
BolC4t21785H Brassica oleracea HOM05D004242 ORTHO05D004349 3.8e-16 90.5 288 31.6
Sed0017381 Sechium edule HOM05D004242 ORTHO05D004349 6.6e-16 89.7 266 35.0
A05p01160 Brassica napus HOM05D004242 ORTHO05D004349 1.5e-15 88.6 274 31.4
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.5e-15 88.6 284 31.7
CARHR141970 Cardamine hirsuta HOM05D004242 ORTHO05D004349 1.9e-15 88.2 259 33.6
BraA04t18910Z Brassica rapa HOM05D004242 ORTHO05D004349 5.6e-15 86.7 262 34.0
Sed0006480 Sechium edule HOM05D004242 ORTHO05D004349 7.3e-15 86.3 271 32.5
A04p34530 Brassica napus HOM05D004242 ORTHO05D004349 1.2e-14 85.5 293 33.8
PSO761G0055 Papaver somniferum HOM05D004242 ORTHO05D004349 1.2e-14 85.5 251 32.7
Lsat_1_v5_gn_3_140940 Lactuca sativa HOM05D004242 ORTHO05D004349 1.6e-14 85.1 231 35.9
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.1e-14 84.7 261 32.2
PSO210G2709 Papaver somniferum HOM05D004242 ORTHO05D004349 2.1e-14 84.7 246 32.9
arahy.Tifrunner.gnm1.ann1.6W400J Arachis hypogaea HOM05D004242 ORTHO05D004349 2.8e-14 84.3 175 37.1
Sp4g28680 Schrenkiella parvula HOM05D004242 ORTHO05D004349 2.8e-14 84.3 277 33.2
MSTRG.20915 Avicennia marina HOM05D004242 ORTHO05D004349 3.6e-14 84.0 256 35.5
arahy.Tifrunner.gnm1.ann1.YBIH8U Arachis hypogaea HOM05D004242 ORTHO05D004349 8.0e-14 82.8 175 34.9
Nn4g22396 Nelumbo nucifera HOM05D004242 ORTHO05D004349 8.0e-14 82.8 285 34.0
Thhalv10001731m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 1.0e-13 82.4 275 33.5
Aa31LG1G28030 Aethionema arabicum HOM05D004242 ORTHO05D004349 1.8e-13 81.6 314 32.2
AUR62022719 Chenopodium quinoa HOM05D004242 ORTHO05D004349 1.8e-13 81.6 296 30.1
unitig_8.g4995 Utricularia gibba HOM05D004242 ORTHO05D004349 1.8e-13 81.6 270 34.1
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 2.3e-13 81.3 275 33.1
Dinv32623 Davidia involucrata HOM05D004242 ORTHO05D004349 2.6e-12 77.8 129 40.3
CsaV3_3G007800 Cucumis sativus L. HOM05D004242 ORTHO05D004349 3.4e-12 77.4 254 32.3
MELO3C005996.2 Cucumis melo HOM05D004242 ORTHO05D004349 4.4e-12 77.0 254 31.9
BcaC07g42602 Brassica carinata HOM05D004242 ORTHO05D004349 7.5e-12 76.3 150 37.3
Sp5g01480 Schrenkiella parvula HOM05D004242 ORTHO05D004349 1.7e-11 75.1 272 30.5
Lj3g0014324 Lotus japonicus HOM05D004242 ORTHO05D004349 2.2e-11 74.7 261 32.2
CiPaw.02G043000 Carya illinoinensis HOM05D004242 ORTHO05D004349 2.9e-11 74.3 128 38.3
Thhalv10006210m.g Eutrema salsugineum HOM05D004242 ORTHO05D004349 3.7e-11 73.9 286 30.8
Medtr8g027290 Medicago truncatula HOM05D004242 ORTHO05D004349 3.7e-11 73.9 150 34.7
Sed0022787 Sechium edule HOM05D004242 ORTHO05D004349 4.1e-10 70.5 255 32.5
C08p36720 Brassica napus HOM05D004242 ORTHO05D004349 5.4e-10 70.1 272 29.0
BolC8t51254H Brassica oleracea HOM05D004242 ORTHO05D004349 5.4e-10 70.1 272 29.0
BraA09t40807Z Brassica rapa HOM05D004242 ORTHO05D004349 5.4e-10 70.1 262 30.9
A09p53910 Brassica napus HOM05D004242 ORTHO05D004349 1.2e-09 68.9 273 30.8
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 2.7e-09 67.8 153 34.0
Aqoxy2G02545 Aquilegia oxysepala HOM05D004242 ORTHO05D004349 4.6e-09 67.0 127 36.2
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 4.6e-09 67.0 209 33.0
ClCG05G000600 Citrullus lanatus HOM05D004242 ORTHO05D004349 7.8e-09 66.2 224 28.1
Sc01g0002380 Simmondsia chinensis HOM05D004242 ORTHO05D004349 2.3e-08 64.7 260 29.6
Lalb_Chr10g0100731 Lupinus albus HOM05D004242 ORTHO05D004349 2.5e-07 61.2 226 26.5
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 3.3e-07 60.8 147 31.3
MELO3C022249.2 Cucumis melo HOM05D004242 ORTHO05D004349 3.3e-07 60.8 500 29.4
Glyma.07G052632 Glycine max HOM05D004242 ORTHO05D004349 5.6e-07 60.1 296 25.7
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 5.6e-07 60.1 144 33.3
ECA236G3302 Erigeron canadensis HOM05D004242 ORTHO05D004349 7.3e-07 59.7 236 32.2
Sed0012028 Sechium edule HOM05D004242 ORTHO05D004349 7.3e-07 59.7 231 28.1
MELO3C005997.2 Cucumis melo HOM05D004242 ORTHO05D004349 9.5e-07 59.3 237 28.3
VMungo0331G0257 Vigna mungo HOM05D004242 ORTHO05D004349 3.6e-06 57.4 262 27.1
Sc23g0001950 Simmondsia chinensis HOM05D004242 ORTHO05D004349 4.7e-06 57.0 171 34.5
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 8.0e-06 56.2 126 34.1


User provided reference genes

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