Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.1e-129 465.7 236 100.0
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 8.4e-110 400.6 240 87.1
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 3.1e-88 328.9 178 96.1
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 6.9e-88 327.8 177 96.0
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.2e-86 322.8 179 93.9
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 1.0e-83 313.9 179 89.9
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 5.5e-69 265.0 176 76.1
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 1.4e-67 260.4 176 75.6
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 6.7e-67 258.1 178 73.6
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 9.7e-66 254.2 184 70.1
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 9.7e-66 254.2 184 70.1
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 1.4e-64 250.4 181 72.4
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 4.1e-64 248.8 189 68.3
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 5.3e-64 248.4 180 71.7
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 2.6e-63 246.1 171 71.3
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 3.5e-63 245.7 162 76.5
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 3.5e-63 245.7 154 77.9
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 4.5e-63 245.4 181 72.4
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 4.5e-63 245.4 180 71.7
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 1.7e-62 243.4 154 77.9
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 3.8e-62 242.3 154 77.3
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 6.5e-62 241.5 164 74.4
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 8.5e-62 241.1 154 78.6
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.1e-61 240.7 164 74.4
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 4.2e-61 238.8 178 69.7
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 5.5e-61 238.4 186 67.2
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 7.2e-61 238.0 176 68.8
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 1.2e-60 237.3 154 76.6
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.6e-60 236.9 164 75.0
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 2.1e-60 236.5 163 73.6
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 4.7e-60 235.3 180 68.3
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 6.1e-60 235.0 180 67.8
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 8.0e-60 234.6 177 70.6
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 8.0e-60 234.6 157 71.3
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 1.0e-59 234.2 180 67.2
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 1.4e-59 233.8 176 69.3
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 2.3e-59 233.0 188 66.5
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 4.0e-59 232.3 178 67.4
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 8.8e-59 231.1 188 66.0
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 8.8e-59 231.1 191 64.9
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.1e-58 230.7 185 65.9
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.1e-58 230.7 179 67.6
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 1.1e-58 230.7 166 67.5
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 1.5e-58 230.3 179 67.6
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 5.7e-58 228.4 191 64.9
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 7.5e-58 228.0 184 64.7
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 1.7e-57 226.9 177 68.4
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 2.8e-57 226.1 163 66.3
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 4.8e-57 225.3 170 69.4
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 1.1e-56 224.2 186 64.0
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 1.4e-56 223.8 181 66.3
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 1.4e-56 223.8 183 65.0
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 3.1e-56 222.6 151 73.5
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 3.1e-56 222.6 178 64.0
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 9.1e-56 221.1 163 66.9
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 4.5e-55 218.8 158 69.6
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 1.0e-54 217.6 166 68.1
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 1.0e-54 217.6 155 71.0
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 1.3e-54 217.2 181 64.1
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 1.7e-54 216.9 190 64.7
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 3.8e-54 215.7 156 71.8
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 5.0e-54 215.3 156 64.1
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 5.0e-54 215.3 190 64.2
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 1.1e-53 214.2 178 64.0
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 1.9e-53 213.4 169 66.3
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 4.2e-53 212.2 169 64.5
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 5.5e-53 211.8 169 60.9
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 5.5e-53 211.8 168 63.1
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 5.5e-53 211.8 172 62.8
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 5.5e-53 211.8 172 62.8
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 5.5e-53 211.8 165 66.1
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 7.2e-53 211.5 188 60.1
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 7.2e-53 211.5 179 58.1
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 2.1e-52 209.9 172 62.2
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 2.1e-52 209.9 172 62.2
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 2.7e-52 209.5 188 60.6
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 6.1e-52 208.4 167 67.1
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 8.0e-52 208.0 167 64.1
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.4e-51 207.2 165 64.8
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 1.4e-51 207.2 154 67.5
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 4.0e-51 205.7 189 54.5
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 6.8e-51 204.9 147 70.1
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 7.5e-50 201.4 167 63.5
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 4.8e-49 198.7 156 64.7
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 6.3e-49 198.4 186 54.3
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 1.8e-48 196.8 135 74.1
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 1.1e-45 187.6 110 81.8
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 1.6e-44 183.7 107 79.4
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 4.7e-44 182.2 133 68.4
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 1.4e-43 180.6 107 78.5
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 6.8e-43 178.3 142 64.1
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 2.0e-42 176.8 142 62.7
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 1.7e-41 173.7 162 54.3
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 2.2e-41 173.3 134 67.9
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 1.1e-40 171.0 126 65.1
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 7.7e-39 164.9 161 54.7
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 2.3e-38 163.3 142 54.9
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.1e-37 161.0 142 54.2
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 3.6e-36 156.0 160 50.0
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 4.9e-33 145.6 137 54.0
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 8.9e-27 124.8 152 46.7
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 1.2e-26 124.4 172 43.6
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 4.1e-24 115.9 70 72.9
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 1.2e-23 114.4 70 71.4
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 2.8e-20 103.2 201 35.8
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 1.8e-19 100.5 93 59.1
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 2.3e-19 100.1 89 57.3
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 5.2e-19 99.0 83 61.4
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 2.9e-17 93.2 124 46.8
FvH4_7g10730 Fragaria vesca HOM05D000143 ORTHO05D000072 1.9e-16 90.5 44 93.2
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 5.1e-14 82.4 151 37.7
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 1.1e-11 74.7 62 56.5
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 4.0e-11 72.8 64 56.2
Lalb_Chr19g0127491 Lupinus albus HOM05D006988 ORTHO05D008731 1.7e-09 67.4 57 61.4
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 4.1e-08 62.8 70 52.9
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 1.6e-07 60.8 134 30.6
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 8.6e-06 55.1 27 77.8


User provided reference genes

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