Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2436 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.6e-58 227.6 112 100.0
RcHm_v2.0_Chr7g0176911 Rosa chinensis HOM05D000003 ORTHO05D006737 3.3e-32 141.7 106 61.3
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 6.5e-28 127.5 105 57.1
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 3.3e-24 115.2 104 52.9
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 4.4e-24 114.8 106 50.0
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 5.7e-24 114.4 104 52.9
FvH4_4g20982 Fragaria vesca HOM05D000003 ORTHO05D006737 2.2e-23 112.5 106 49.1
RcHm_v2.0_Chr4g0395671 Rosa chinensis HOM05D000003 ORTHO05D006737 2.8e-23 112.1 107 51.4
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 4.8e-23 111.3 106 49.1
RcHm_v2.0_Chr5g0033371 Rosa chinensis HOM05D000003 ORTHO05D006737 1.8e-22 109.4 106 50.0
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 9.1e-22 107.1 106 49.1
RcHm_v2.0_Chr5g0031961 Rosa chinensis HOM05D000003 ORTHO05D006737 9.1e-22 107.1 106 47.2
RcHm_v2.0_Chr5g0040041 Rosa chinensis HOM05D000003 ORTHO05D006737 3.5e-21 105.1 106 49.1
FvH4_3g25361 Fragaria vesca HOM05D000003 ORTHO05D006737 7.7e-21 104.0 105 50.5
RcHm_v2.0_Chr5g0065261 Rosa chinensis HOM05D000003 ORTHO05D006737 1.0e-20 103.6 106 50.0
RcHm_v2.0_Chr1g0336051 Rosa chinensis HOM05D000003 ORTHO05D006737 1.7e-20 102.8 106 46.2
RcHm_v2.0_Chr2g0118121 Rosa chinensis HOM05D000003 ORTHO05D006737 2.2e-20 102.4 104 44.2
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 3.8e-20 101.7 106 49.1
RcHm_v2.0_Chr6g0288751 Rosa chinensis HOM05D000003 ORTHO05D006737 3.8e-20 101.7 106 49.1
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 1.5e-19 99.8 106 44.3
RcHm_v2.0_Chr2g0125521 Rosa chinensis HOM05D000003 ORTHO05D006737 1.5e-19 99.8 106 44.3
RcHm_v2.0_Chr5g0072311 Rosa chinensis HOM05D000003 ORTHO05D006737 1.9e-19 99.4 90 50.0
FAN14G5848 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.5e-19 99.0 104 47.1
FvH4_3g27973 Fragaria vesca HOM05D000003 ORTHO05D006737 3.2e-19 98.6 90 48.9
FvH4_1g19421 Fragaria vesca HOM05D000003 ORTHO05D006737 4.2e-19 98.2 91 51.6
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 4.2e-19 98.2 98 49.0
RcHm_v2.0_Chr4g0397511 Rosa chinensis HOM05D000003 ORTHO05D006737 4.2e-19 98.2 106 44.3
FAN25G3140 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.2e-19 97.4 97 48.5
RcHm_v2.0_Chr7g0198361 Rosa chinensis HOM05D000003 ORTHO05D006737 9.4e-19 97.1 102 46.1
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 1.2e-18 96.7 104 49.0
FvH4_4g10782 Fragaria vesca HOM05D000003 ORTHO05D006737 3.6e-18 95.1 106 45.3
FvH4_6g52701 Fragaria vesca HOM05D000003 ORTHO05D006737 3.6e-18 95.1 104 49.0
FAN12G2468 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.4e-17 93.2 90 48.9
FAN13G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.8e-17 92.8 106 45.3
FAN20G2266 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.8e-17 92.8 106 43.4
FAN27G1320 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.8e-17 92.8 82 53.7
FAN12G3592 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.0e-17 92.0 90 48.9
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 5.2e-17 91.3 106 42.5
FAN18G0619 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.2e-17 91.3 105 44.8
RcHm_v2.0_Chr7g0212601 Rosa chinensis HOM05D000003 ORTHO05D006737 6.7e-17 90.9 106 44.3
RcHm_v2.0_Chr4g0423161 Rosa chinensis HOM05D000003 ORTHO05D006737 1.5e-16 89.7 79 53.2
FvH4_2g19503 Fragaria vesca HOM05D000003 ORTHO05D006737 2.0e-16 89.4 80 51.2
FAN17G0585 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.0e-16 89.4 101 49.5
RcHm_v2.0_Chr1g0348191 Rosa chinensis HOM05D000003 ORTHO05D006737 4.4e-16 88.2 78 56.4
FAN19G0394 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.3e-15 86.7 82 48.8
FAN19G1043 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.3e-15 86.7 82 48.8
FvH4_6g06990 Fragaria vesca HOM05D000003 ORTHO05D006737 2.8e-15 85.5 82 47.6
FAN15G1410 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.8e-15 84.7 86 44.2
RcHm_v2.0_Chr6g0260491 Rosa chinensis HOM05D000003 ORTHO05D006737 8.2e-15 84.0 78 57.7
FvH4_6g21171 Fragaria vesca HOM05D000003 ORTHO05D006737 1.1e-14 83.6 102 39.2
FvH4_4g24131 Fragaria vesca HOM05D000003 ORTHO05D015112 1.4e-14 83.2 96 46.9
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 1.8e-14 82.8 67 59.7
FAN01G1087 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.8e-14 82.8 101 41.6
FAN14G2822 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.1e-14 81.6 88 46.6
FvH4_6g08250 Fragaria vesca HOM05D000003 ORTHO05D006737 5.3e-14 81.3 88 46.6
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 7.0e-14 80.9 92 42.4
FvH4_5g30811 Fragaria vesca HOM05D000003 ORTHO05D006737 1.6e-13 79.7 100 43.0
FvH4_6g32941 Fragaria vesca HOM05D000003 ORTHO05D006737 1.6e-13 79.7 104 40.4
FAN13G3306 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.6e-13 79.7 83 43.4
FAN15G2825 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.7e-13 79.0 89 47.2
RcHm_v2.0_Chr5g0036711 Rosa chinensis HOM05D000003 ORTHO05D006737 2.7e-13 79.0 83 49.4
FvH4_5g33393 Fragaria vesca HOM05D000003 ORTHO05D006737 3.5e-13 78.6 92 43.5
FAN14G3227 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.5e-13 78.2 90 43.3
FAN14G0257 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.0e-12 77.0 75 46.7
FvH4_6g08193 Fragaria vesca HOM05D000003 ORTHO05D006737 1.3e-12 76.6 77 44.2
FAN07G0617 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.3e-12 76.6 101 36.6
FAN09G3474 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.3e-12 76.6 71 52.1
FvH4_3g30681 Fragaria vesca HOM05D000003 ORTHO05D000006 6.5e-12 74.3 68 52.9
RcHm_v2.0_Chr3g0474921 Rosa chinensis HOM05D000003 ORTHO05D006737 1.9e-11 72.8 84 45.2
FvH4_6g36441 Fragaria vesca HOM05D000003 ORTHO05D019158 2.5e-11 72.4 109 39.4
FAN11G0642 Fragaria x ananassa HOM05D000355 ORTHO05D000227 4.2e-11 71.6 78 46.2
FAN03G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.4e-11 70.5 66 53.0
FAN09G1162 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.4e-11 70.5 59 66.1
FAN18G0759 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.4e-11 70.5 74 48.6
FvH4_4g16971 Fragaria vesca HOM05D000003 ORTHO05D000004 1.2e-10 70.1 60 58.3
FvH4_5g01660 Fragaria vesca HOM05D000003 ORTHO05D006737 4.7e-10 68.2 106 39.6
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 6.1e-10 67.8 73 43.8
FvH4_4g07172 Fragaria vesca HOM05D000003 ORTHO05D006737 1.0e-09 67.0 54 57.4
FAN01G1551 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.0e-09 67.0 65 50.8
FAN22G0118 Fragaria x ananassa HOM05D001283 ORTHO05D001109 1.0e-09 67.0 70 47.1
FAN04G0671 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.4e-09 66.6 64 53.1
FAN07G0587 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.0e-09 65.5 74 45.9
FvH4_5g04911 Fragaria vesca HOM05D000003 ORTHO05D006737 8.8e-09 63.9 73 46.6
FAN01G2975 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.0e-08 62.8 106 37.7
Dinv21289 Davidia involucrata HOM05D000079 ORTHO05D000211 2.6e-08 62.4 103 33.0
FAN05G1256 Fragaria x ananassa HOM05D000031 ORTHO05D000030 3.4e-08 62.0 65 44.6
FAN26G2731 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.7e-08 61.2 50 62.0
FAN05G1347 Fragaria x ananassa HOM05D015760 ORTHO05D020672 7.5e-08 60.8 63 50.8
FAN16G3138 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.5e-08 60.8 63 49.2
FvH4_6g31921 Fragaria vesca HOM05D000003 ORTHO05D006737 9.8e-08 60.5 63 46.0
FAN05G1674 Fragaria x ananassa HOM05D038108 ORTHO05D006737 9.8e-08 60.5 60 50.0
RcHm_v2.0_Chr2g0135511 Rosa chinensis HOM05D008833 ORTHO05D010662 2.2e-07 59.3 105 35.2
FvH4_6g20980 Fragaria vesca HOM05D017784 ORTHO05D006737 3.7e-07 58.5 53 47.2
FAN19G2949 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.7e-07 58.5 61 45.9
RcHm_v2.0_Chr5g0038031 Rosa chinensis HOM05D009322 ORTHO05D010713 3.7e-07 58.5 96 34.4
FAN08G0755 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.3e-07 57.8 64 43.8
AUR62034216 Chenopodium quinoa HOM05D000003 ORTHO05D000167 8.3e-07 57.4 91 34.1
RcHm_v2.0_Chr3g0478611 Rosa chinensis HOM05D000003 ORTHO05D000004 1.4e-06 56.6 106 32.1
RcHm_v2.0_Chr3g0471531 Rosa chinensis HOM05D065238 ORTHO05D012679 1.8e-06 56.2 107 30.8
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 2.4e-06 55.8 104 36.5
RcHm_v2.0_Chr2g0142781 Rosa chinensis HOM05D008833 ORTHO05D010662 2.4e-06 55.8 99 34.3
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 4.1e-06 55.1 94 34.0
Dinv08495 Davidia involucrata HOM05D000003 ORTHO05D000167 4.1e-06 55.1 103 31.1
FAN06G1148 Fragaria x ananassa HOM05D025964 ORTHO05D045392 5.4e-06 54.7 53 49.1
FAN19G0368 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.4e-06 54.7 74 41.9
RcHm_v2.0_Chr7g0203591 Rosa chinensis HOM05D009322 ORTHO05D010713 5.4e-06 54.7 84 31.0
FAN08G2392 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.1e-06 53.9 69 42.0


User provided reference genes

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