Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2364 Fragaria x ananassa HOM05D005469 ORTHO05D001701 1.3e-99 366.3 173 100.0
FvH4_7g24940 Fragaria vesca HOM05D005469 ORTHO05D001701 1.1e-69 266.9 142 92.3
FAN06G3559 Fragaria x ananassa HOM05D005469 ORTHO05D001701 1.1e-69 266.9 142 92.3
FAN10G1213 Fragaria x ananassa HOM05D005469 ORTHO05D001701 1.3e-67 260.0 142 90.1
RcHm_v2.0_Chr1g0370811 Rosa chinensis HOM05D005469 ORTHO05D001701 4.6e-65 251.5 142 86.6
MD01G1156800 Malus domestica HOM05D005469 ORTHO05D001701 2.6e-44 182.6 152 63.2
GSVIVG01032773001 Vitis vinifera HOM05D005469 ORTHO05D001701 2.9e-43 179.1 148 60.1
TWI73G0354 Tripterygium wilfordii HOM05D005469 ORTHO05D001701 1.4e-42 176.8 145 60.0
CiPaw.02G194900 Carya illinoinensis HOM05D005469 ORTHO05D001701 5.5e-42 174.9 143 60.1
Cfa001288 Carpinus fangiana HOM05D005469 ORTHO05D001701 4.6e-41 171.8 140 60.0
Lalb_Chr11g0075051 Lupinus albus HOM05D005469 ORTHO05D001701 1.4e-40 170.2 100 74.0
Haze_17261 Corylus avellana HOM05D005469 ORTHO05D001701 3.9e-40 168.7 140 60.0
Glyma.11G232100 Glycine max HOM05D005469 ORTHO05D001701 3.9e-40 168.7 146 58.9
CANSAT56G3078 Cannabis sativa HOM05D005469 ORTHO05D001701 5.1e-40 168.3 150 57.3
Psat5g130360 Pisum sativum HOM05D005469 ORTHO05D001701 5.1e-40 168.3 147 57.1
Lj1C959T17 Lonicera japonica HOM05D005469 ORTHO05D001701 6.7e-40 167.9 99 74.7
Ca_15147_v3 Cicer arietinum L. HOM05D005469 ORTHO05D001701 8.8e-40 167.5 148 58.1
Dinv21761 Davidia involucrata HOM05D005469 ORTHO05D001701 8.8e-40 167.5 148 55.4
QL08p063579 Quercus lobata HOM05D005469 ORTHO05D001701 1.1e-39 167.2 143 55.2
Thecc.10G012300 Theobroma cacao HOM05D005469 ORTHO05D001701 1.1e-39 167.2 147 60.5
MD07G1225500 Malus domestica HOM05D005469 ORTHO05D001701 2.0e-39 166.4 151 58.9
Manes.07G132700 Manihot esculenta HOM05D005469 ORTHO05D001701 2.0e-39 166.4 100 75.0
CANSAT56G4151 Cannabis sativa HOM05D005469 ORTHO05D001701 2.5e-39 166.0 150 56.7
CAN.G1268.13 Capsicum annuum HOM05D005469 ORTHO05D001701 3.3e-39 165.6 151 55.6
Glyma.18G025200 Glycine max HOM05D005469 ORTHO05D001701 3.3e-39 165.6 148 57.4
Manes.10G009700 Manihot esculenta HOM05D005469 ORTHO05D001701 3.3e-39 165.6 149 59.1
VMungo1383G2982 Vigna mungo HOM05D005469 ORTHO05D001701 3.3e-39 165.6 145 56.6
CSS0028429 Camellia sinensis var. sinensis HOM05D005469 ORTHO05D001701 9.7e-39 164.1 145 55.2
Duzib128G1408 Durio zibethinus HOM05D005469 ORTHO05D001701 9.7e-39 164.1 148 57.4
Cc02_g06130 Coffea canephora HOM05D005469 ORTHO05D001701 1.3e-38 163.7 148 58.1
Sabra10G0142600 Salix brachista HOM05D005469 ORTHO05D001701 1.7e-38 163.3 151 57.6
Phvul.001G245200 Phaseolus vulgaris HOM05D005469 ORTHO05D001701 2.2e-38 162.9 149 55.0
Lalb_Chr08g0231561 Lupinus albus HOM05D005469 ORTHO05D001701 2.8e-38 162.5 145 56.6
Ciclev10033597m.g Citrus clementina HOM05D005469 ORTHO05D001701 3.7e-38 162.2 147 56.5
RcHm_v2.0_Chr1g0370801 Rosa chinensis HOM05D005469 ORTHO05D001701 3.7e-38 162.2 144 57.6
Potri.010G185400 Populus trichocarpa HOM05D005469 ORTHO05D001701 4.8e-38 161.8 151 57.6
TPR.G30151 Trifolium pratense HOM05D005469 ORTHO05D001701 6.3e-38 161.4 145 53.1
MELO3C018370.2 Cucumis melo HOM05D005469 ORTHO05D001701 1.4e-37 160.2 99 71.7
TAR623G0989 Trochodendron aralioides HOM05D005469 ORTHO05D001701 1.4e-37 160.2 149 55.7
Cfa001290 Carpinus fangiana HOM05D005469 ORTHO05D001701 2.4e-37 159.5 149 57.7
Haze_17260 Corylus avellana HOM05D005469 ORTHO05D001701 2.4e-37 159.5 147 56.5
Medtr3g071470 Medicago truncatula HOM05D005469 ORTHO05D001701 2.4e-37 159.5 136 58.1
TAR633G0722 Trochodendron aralioides HOM05D005469 ORTHO05D001701 2.4e-37 159.5 149 53.7
Lj6g0021216 Lotus japonicus HOM05D005469 ORTHO05D001701 3.1e-37 159.1 135 59.3
CsaV3_5G010340 Cucumis sativus L. HOM05D005469 ORTHO05D001701 4.1e-37 158.7 99 70.7
Potri.008G072000 Populus trichocarpa HOM05D005469 ORTHO05D001701 4.1e-37 158.7 151 56.3
Duzib114G0491 Durio zibethinus HOM05D005469 ORTHO05D001701 6.9e-37 157.9 140 56.4
Hma1.2p1_3227F.1_g334240 Hydrangea macrophylla HOM05D005469 ORTHO05D001701 6.9e-37 157.9 136 57.4
Sopen05g031040 Solanum pennellii HOM05D005469 ORTHO05D001701 6.9e-37 157.9 142 57.0
Nitab4.5_0000789g0080 Nicotiana tabacum HOM05D005469 ORTHO05D001701 9.1e-37 157.5 136 58.1
Eucgr.G03079 Eucalyptus grandis HOM05D005469 ORTHO05D001701 1.2e-36 157.1 145 53.1
ClCG07G004420 Citrullus lanatus HOM05D005469 ORTHO05D001701 1.5e-36 156.8 139 58.3
ECA238G2582 Erigeron canadensis HOM05D005469 ORTHO05D001701 1.5e-36 156.8 152 53.9
Duzib106G0906 Durio zibethinus HOM05D005469 ORTHO05D001701 2.0e-36 156.4 146 56.8
HanXRQChr14g0459401 Helianthus annuus HOM05D005469 ORTHO05D001701 2.0e-36 156.4 150 52.7
LjContig00357g0002708 Lotus japonicus HOM05D005469 ORTHO05D001701 2.0e-36 156.4 148 54.1
Peaxi162Scf00045g02525 Petunia axillaris HOM05D000087 ORTHO05D000793 2.0e-36 156.4 99 70.7
Solyc05g052500.4 Solanum lycopersicum HOM05D000087 ORTHO05D000793 2.0e-36 156.4 144 54.9
HanXRQChr07g0203111 Helianthus annuus HOM05D005469 ORTHO05D001701 3.4e-36 155.6 148 52.0
RcHm_v2.0_Chr1g0370791 Rosa chinensis HOM05D005469 ORTHO05D001701 3.4e-36 155.6 144 56.9
PGSC0003DMG400027122 Solanum tuberosum HOM05D005469 ORTHO05D001701 4.5e-36 155.2 100 67.0
PSO801G0522 Papaver somniferum HOM05D005469 ORTHO05D001701 5.9e-36 154.8 151 53.0
Atru.chr12.80 Acer truncatum HOM05D005469 ORTHO05D001701 7.7e-36 154.5 149 52.3
PSO339G0551 Papaver somniferum HOM05D005469 ORTHO05D001701 1.3e-35 153.7 151 52.3
arahy.Tifrunner.gnm1.ann1.NV82FA Arachis hypogaea HOM05D005469 ORTHO05D001701 1.7e-35 153.3 133 57.9
Lsat_1_v5_gn_2_124301 Lactuca sativa HOM05D005469 ORTHO05D001701 1.7e-35 153.3 145 53.8
ECA238G1751 Erigeron canadensis HOM05D005469 ORTHO05D001701 2.2e-35 152.9 100 66.0
Nitab4.5_0000058g0190 Nicotiana tabacum HOM05D005469 ORTHO05D001701 2.2e-35 152.9 146 54.1
SalBow3G1256 Salvia bowleyana HOM05D005469 ORTHO05D001701 2.2e-35 152.9 149 52.3
COL.COLO4_15412 Corchorus olitorius HOM05D005469 ORTHO05D001701 5.0e-35 151.8 144 54.9
arahy.Tifrunner.gnm1.ann1.JSQZ9G Arachis hypogaea HOM05D005469 ORTHO05D001701 8.5e-35 151.0 133 56.4
Nitab4.5_0000666g0120 Nicotiana tabacum HOM05D005469 ORTHO05D001701 1.1e-34 150.6 146 52.7
DCAR_024812 Daucus carota HOM05D005469 ORTHO05D001701 1.4e-34 150.2 99 65.7
Nitab4.5_0003391g0070 Nicotiana tabacum HOM05D000087 ORTHO05D000793 1.4e-34 150.2 145 54.5
Aqoxy1G01324 Aquilegia oxysepala HOM05D005469 ORTHO05D001701 2.5e-34 149.4 99 66.7
Gohir.D10G250700 Gossypium hirsutum HOM05D005469 ORTHO05D001701 4.2e-34 148.7 99 66.7
Gorai.011G291100 Gossypium raimondii HOM05D005469 ORTHO05D001701 4.2e-34 148.7 99 66.7
CAN.G19.12 Capsicum annuum HOM05D005469 ORTHO05D001701 7.2e-34 147.9 148 53.4
Sc10g0002540 Simmondsia chinensis HOM05D005469 ORTHO05D001701 7.2e-34 147.9 154 49.4
FAN01G2198 Fragaria x ananassa HOM05D005469 ORTHO05D001701 1.2e-33 147.1 142 54.9
Aa31LG11G6570 Aethionema arabicum HOM05D005469 ORTHO05D001701 2.1e-33 146.4 140 50.0
Medtr5g014340 Medicago truncatula HOM05D005469 ORTHO05D001701 2.1e-33 146.4 99 65.7
Sed0020461 Sechium edule HOM05D005469 ORTHO05D001701 2.7e-33 146.0 100 65.0
CARHR207770 Cardamine hirsuta HOM05D005469 ORTHO05D001701 4.7e-33 145.2 141 53.2
PGR142G1835 Punica granatum HOM05D005469 ORTHO05D001701 4.7e-33 145.2 99 66.7
SGA_v2.0_scaffold44G16665 Striga asiatica HOM05D005469 ORTHO05D001701 4.7e-33 145.2 150 52.7
THA.LOC104826842 Tarenaya hassleriana HOM05D005469 ORTHO05D001701 4.7e-33 145.2 142 52.1
Sabra08G0053200 Salix brachista HOM05D005469 ORTHO05D001701 6.1e-33 144.8 152 53.3
PGSC0003DMG400030033 Solanum tuberosum HOM05D005469 ORTHO05D001701 6.1e-33 144.8 146 51.4
THA.LOC104816535 Tarenaya hassleriana HOM05D005469 ORTHO05D001701 6.1e-33 144.8 146 50.7
Migut.F00654 Erythranthe guttata HOM05D005469 ORTHO05D001701 1.0e-32 144.1 142 54.2
FvH4_7g24910 Fragaria vesca HOM05D005469 ORTHO05D001701 1.0e-32 144.1 142 54.2
PSO349G0001 Papaver somniferum HOM05D005469 ORTHO05D001701 1.0e-32 144.1 99 64.6
EL10Ac2g04878 Beta vulgaris HOM05D005469 ORTHO05D001701 3.0e-32 142.5 121 53.7
PSO017G6429 Papaver somniferum HOM05D005469 ORTHO05D001701 3.0e-32 142.5 99 63.6
Sopen06g016860 Solanum pennellii HOM05D005469 ORTHO05D001701 3.9e-32 142.1 146 50.7
Ah.10g036310 Amaranthus hybridus HOM05D005469 ORTHO05D001701 8.8e-32 141.0 99 61.6
BraA10t45118Z Brassica rapa HOM05D005469 ORTHO05D001701 1.1e-31 140.6 140 49.3
BcaB05g21713 Brassica carinata HOM05D005469 ORTHO05D001701 1.5e-31 140.2 99 61.6
BraA02t04851Z Brassica rapa HOM05D005469 ORTHO05D001701 2.0e-31 139.8 99 62.6
Thhalv10014798m.g Eutrema salsugineum HOM05D005469 ORTHO05D001701 2.6e-31 139.4 140 49.3
Lsat_1_v5_gn_2_124321 Lactuca sativa HOM05D005469 ORTHO05D001701 4.4e-31 138.7 162 45.1
AT5G05500 Arabidopsis thaliana HOM05D005469 ORTHO05D001701 5.7e-31 138.3 140 47.1
BolC2t06202H Brassica oleracea HOM05D005469 ORTHO05D001701 7.4e-31 137.9 99 61.6
BcaC06g32261 Brassica carinata HOM05D005469 ORTHO05D001701 9.7e-31 137.5 99 60.6
Sp6g37350 Schrenkiella parvula HOM05D005469 ORTHO05D001701 1.3e-30 137.1 140 49.3
C02p02370 Brassica napus HOM05D005469 ORTHO05D001701 1.7e-30 136.7 99 61.6
A10p30770 Brassica napus HOM05D005469 ORTHO05D001701 2.2e-30 136.3 142 49.3
Carub.0006s0440 Capsella rubella HOM05D005469 ORTHO05D001701 2.2e-30 136.3 99 59.6
MBI15_g40303_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 2.2e-30 136.3 142 48.6
AL6G15390 Arabidopsis lyrata HOM05D005469 ORTHO05D001701 2.8e-30 136.0 99 58.6
BcaC06g32262 Brassica carinata HOM05D005469 ORTHO05D001701 2.8e-30 136.0 144 47.2
C09p71260 Brassica napus HOM05D005469 ORTHO05D001701 6.3e-30 134.8 142 49.3
BolC9t59887H Brassica oleracea HOM05D005469 ORTHO05D001701 6.3e-30 134.8 142 49.3
Lj8C63T7 Lonicera japonica HOM05D005469 ORTHO05D001701 8.2e-30 134.4 98 64.3
MBI03_g21447_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 2.4e-29 132.9 147 51.7
Cpa.g.sc19.144 Carica papaya HOM05D005469 ORTHO05D001701 4.1e-29 132.1 131 51.1
AUR62022927 Chenopodium quinoa HOM05D005469 ORTHO05D001701 9.1e-29 131.0 99 59.6
AUR62012286 Chenopodium quinoa HOM05D005469 ORTHO05D001701 2.6e-28 129.4 99 58.6
COL.COLO4_25530 Corchorus olitorius HOM05D005469 ORTHO05D001701 2.6e-28 129.4 142 47.9
MBI03_g43893_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 1.0e-27 127.5 99 61.6
FAN10G0251 Fragaria x ananassa HOM05D005469 ORTHO05D001701 2.6e-20 102.8 139 43.9
FAN03G1502 Fragaria x ananassa HOM05D005469 ORTHO05D001701 7.7e-20 101.3 76 60.5
HPP92_018099 Vanilla planifolia HOM05D005469 ORTHO05D001701 2.9e-19 99.4 143 36.4
Prupe.2G254400 Prunus persica HOM05D005469 ORTHO05D001701 8.5e-19 97.8 93 58.1
DCAR_011836 Daucus carota HOM05D005469 ORTHO05D001701 1.5e-18 97.1 147 39.5
BcaB05g21714 Brassica carinata HOM05D005469 ORTHO05D001701 9.4e-18 94.4 78 57.7
MBI03_g21448_MAGBIO Magnolia biondii HOM05D005469 ORTHO05D001701 6.1e-17 91.7 98 48.0
Sed0003622 Sechium edule HOM05D005469 ORTHO05D001701 3.0e-16 89.4 98 44.9
ATR0174G015 Amborella trichopoda HOM05D005469 ORTHO05D001701 8.8e-16 87.8 99 43.4
Prupe.2G254300 Prunus persica HOM05D005469 ORTHO05D001701 3.4e-15 85.9 60 68.3
Os01g0164300 Oryza sativa ssp. japonica HOM05D005469 ORTHO05D001701 1.7e-14 83.6 101 37.6
Gohir.A10G238750 Gossypium hirsutum HOM05D005469 ORTHO05D001701 3.7e-14 82.4 92 50.0
Os01g0164075 Oryza sativa ssp. japonica HOM05D005469 ORTHO05D001701 7.7e-12 74.7 102 39.2
Zm00001eb123470 Zea mays HOM05D005469 ORTHO05D001701 1.7e-11 73.6 106 35.8
Gorai.009G168900 Gossypium raimondii HOM05D003009 ORTHO05D001701 5.0e-11 72.0 98 40.8
Gohir.D05G163801 Gossypium hirsutum HOM05D003009 ORTHO05D001701 6.5e-11 71.6 98 40.8
Gohir.A05G161100 Gossypium hirsutum HOM05D003009 ORTHO05D001701 1.9e-10 70.1 98 40.8
Gohir.A10G238851 Gossypium hirsutum HOM05D005469 ORTHO05D001701 9.4e-10 67.8 45 66.7
Duzib160G0415 Durio zibethinus HOM05D003009 ORTHO05D001701 4.4e-07 58.9 97 38.1
Carub.0002s0823 Capsella rubella HOM05D002284 ORTHO05D002427 5.7e-07 58.5 92 38.0
Medtr7g102770 Medicago truncatula HOM05D007206 ORTHO05D009176 1.7e-06 57.0 91 31.9
QL05p041024 Quercus lobata HOM05D003009 ORTHO05D001701 1.7e-06 57.0 115 36.5
Potri.011G053600 Populus trichocarpa HOM05D003009 ORTHO05D001701 2.2e-06 56.6 98 36.7
CiPaw.09G060900 Carya illinoinensis HOM05D003009 ORTHO05D001701 2.8e-06 56.2 96 34.4
Duzib192G0967 Durio zibethinus HOM05D003009 ORTHO05D001701 2.8e-06 56.2 96 36.5
Thecc.06G185700 Theobroma cacao HOM05D003009 ORTHO05D001701 2.8e-06 56.2 118 36.4
Gohir.A06G128400 Gossypium hirsutum HOM05D003009 ORTHO05D001701 3.7e-06 55.8 96 35.4
Gorai.010G154300 Gossypium raimondii HOM05D003009 ORTHO05D001701 3.7e-06 55.8 96 35.4
Duzib235G1045 Durio zibethinus HOM05D003009 ORTHO05D001701 4.9e-06 55.5 96 35.4
QL05p041061 Quercus lobata HOM05D003009 ORTHO05D001701 6.3e-06 55.1 115 34.8
TPR.G31671 Trifolium pratense HOM05D007206 ORTHO05D009176 6.3e-06 55.1 91 30.8
Gohir.A10G238801 Gossypium hirsutum HOM05D005469 ORTHO05D001701 8.3e-06 54.7 69 47.8


User provided reference genes

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