Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2353 Fragaria x ananassa HOM05D037066 ORTHO05D003347 5.1e-47 190.7 91 100.0
FAN03G2739 Fragaria x ananassa HOM05D002608 ORTHO05D013420 4.0e-44 181.0 91 95.6
FAN10G1862 Fragaria x ananassa HOM05D037066 ORTHO05D003347 1.7e-42 175.6 91 92.3
FAN10G1789 Fragaria x ananassa HOM05D037066 ORTHO05D003347 5.4e-41 170.6 91 91.2
RcHm_v2.0_Chr1g0381731 Rosa chinensis HOM05D003086 ORTHO05D003347 2.4e-36 155.2 91 85.7
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 6.9e-20 100.5 102 61.8
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 1.9e-17 92.4 104 57.7
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 4.2e-17 91.3 79 69.6
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 1.5e-14 82.8 99 53.5
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 4.2e-09 64.7 96 49.0
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 5.5e-09 64.3 99 47.5
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 7.2e-09 63.9 95 44.2
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.7e-08 62.0 95 43.2
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.6e-08 61.6 95 45.3
Gorai.007G015800 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.6e-08 61.6 92 43.5
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 4.7e-08 61.2 99 46.5
Gohir.A09G186001 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.7e-08 61.2 92 46.7
Gohir.D09G180500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.7e-08 61.2 92 46.7
Gorai.006G202500 Gossypium raimondii HOM05D003086 ORTHO05D003347 4.7e-08 61.2 92 46.7
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 6.1e-08 60.8 95 47.4
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 6.1e-08 60.8 82 46.3
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 7.9e-08 60.5 95 43.2
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.0e-07 60.1 51 58.8
Gohir.D11G015350 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.4e-07 59.7 91 41.8
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.4e-07 59.7 54 63.0
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.8e-07 59.3 45 66.7
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 1.8e-07 59.3 91 48.4
Gohir.A11G015250 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.0e-07 58.5 92 42.4
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 3.0e-07 58.5 61 55.7
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 3.0e-07 58.5 43 67.4
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 5.1e-07 57.8 43 69.8
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 6.7e-07 57.4 43 65.1
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 6.7e-07 57.4 66 56.1
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 8.8e-07 57.0 97 42.3
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.1e-06 56.6 49 55.1
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.1e-06 56.6 80 46.2
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.5e-06 56.2 80 46.2
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 1.5e-06 56.2 69 47.8
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 1.5e-06 56.2 43 65.1
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 1.5e-06 56.2 84 46.4
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 1.5e-06 56.2 96 40.6
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.0e-06 55.8 44 68.2
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.0e-06 55.8 51 54.9
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 2.0e-06 55.8 43 62.8
MD01G1084100 Malus domestica HOM05D014299 ORTHO05D017012 2.0e-06 55.8 59 55.9
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 2.0e-06 55.8 90 40.0
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 2.0e-06 55.8 53 58.5
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 2.6e-06 55.5 71 49.3
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 2.6e-06 55.5 43 62.8
EL10Ac3g05245 Beta vulgaris HOM05D003086 ORTHO05D003347 3.3e-06 55.1 81 44.4
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.3e-06 55.1 80 42.5
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 4.4e-06 54.7 80 47.5
AUR62006063 Chenopodium quinoa HOM05D003086 ORTHO05D003347 4.4e-06 54.7 80 43.8
AUR62035564 Chenopodium quinoa HOM05D003086 ORTHO05D003347 4.4e-06 54.7 80 43.8
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 4.4e-06 54.7 45 60.0
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 4.4e-06 54.7 66 51.5
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 4.4e-06 54.7 43 60.5
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 4.4e-06 54.7 73 46.6
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 5.7e-06 54.3 43 65.1
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 7.4e-06 53.9 55 56.4
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 7.4e-06 53.9 59 50.8
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 9.7e-06 53.5 49 53.1
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 9.7e-06 53.5 84 42.9
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 9.7e-06 53.5 55 56.4


User provided reference genes

Program Settings