Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2325 Fragaria x ananassa HOM05D001081 ORTHO05D004708 7.1e-46 186.8 88 100.0
FvH4_7g31550 Fragaria vesca HOM05D001081 ORTHO05D004708 2.9e-39 164.9 87 87.4
FAN06G1778 Fragaria x ananassa HOM05D001081 ORTHO05D004708 2.9e-39 164.9 87 87.4
FAN06G3553 Fragaria x ananassa HOM05D001081 ORTHO05D004708 2.9e-39 164.9 87 87.4
RcHm_v2.0_Chr1g0380531 Rosa chinensis HOM05D001081 ORTHO05D004708 1.6e-37 159.1 85 83.5
RcHm_v2.0_Chr1g0381531 Rosa chinensis HOM05D001081 ORTHO05D004708 1.8e-36 155.6 81 87.7
FAN01G0187 Fragaria x ananassa HOM05D001081 ORTHO05D004708 5.3e-33 144.1 99 73.7
Prupe.2G309600 Prunus persica HOM05D001081 ORTHO05D004708 1.9e-30 135.6 78 79.5
CiPaw.06G046000 Carya illinoinensis HOM05D001081 ORTHO05D004708 8.7e-28 126.7 83 68.7
Dinv35339 Davidia involucrata HOM05D001081 ORTHO05D004708 1.5e-27 125.9 84 67.9
CANSAT21G2573 Cannabis sativa HOM05D001081 ORTHO05D004708 2.5e-27 125.2 86 66.3
Atru.chr12.2203 Acer truncatum HOM05D001081 ORTHO05D004708 9.6e-27 123.2 83 67.5
Potri.012G016100 Populus trichocarpa HOM05D001081 ORTHO05D004708 9.6e-27 123.2 85 64.7
CANSAT21G1825 Cannabis sativa HOM05D001081 ORTHO05D004708 1.6e-26 122.5 84 66.7
Nn1g00260 Nelumbo nucifera HOM05D001081 ORTHO05D004708 1.6e-26 122.5 85 68.2
Cfa016233 Carpinus fangiana HOM05D001081 ORTHO05D004708 2.8e-26 121.7 85 65.9
TWI39G0445 Tripterygium wilfordii HOM05D001081 ORTHO05D004708 4.8e-26 120.9 75 69.3
CANSAT21G0069 Cannabis sativa HOM05D001081 ORTHO05D004708 6.2e-26 120.6 81 67.9
QL09p008772 Quercus lobata HOM05D001081 ORTHO05D004708 1.1e-25 119.8 74 67.6
TAR375G0280 Trochodendron aralioides HOM05D001081 ORTHO05D004708 1.1e-25 119.8 85 63.5
Manes.01G183500 Manihot esculenta HOM05D001081 ORTHO05D004708 1.4e-25 119.4 85 63.5
EL10Ac3g05278 Beta vulgaris HOM05D001081 ORTHO05D004708 2.4e-25 118.6 85 65.9
PSO781G0289 Papaver somniferum HOM05D001081 ORTHO05D004708 6.9e-25 117.1 85 64.7
Ciclev10018477m.g Citrus clementina HOM05D001081 ORTHO05D004708 9.0e-25 116.7 83 63.9
Lsat_1_v5_gn_8_5261 Lactuca sativa HOM05D001081 ORTHO05D004708 1.2e-24 116.3 85 60.0
Ah.07g205570 Amaranthus hybridus HOM05D001081 ORTHO05D004708 1.5e-24 115.9 82 64.6
Hund21007 Selenicereus undatus HOM05D001081 ORTHO05D004708 1.5e-24 115.9 82 62.2
Actinidia08651 Actinidia chinensis HOM05D001081 ORTHO05D004708 2.6e-24 115.2 70 68.6
Gorai.007G015700 Gossypium raimondii HOM05D001081 ORTHO05D004708 4.5e-24 114.4 84 60.7
MD07G1288100 Malus domestica HOM05D001081 ORTHO05D004708 5.8e-24 114.0 81 69.1
Gohir.D11G015300 Gossypium hirsutum HOM05D001081 ORTHO05D004708 1.3e-23 112.8 84 59.5
PSO063G4550 Papaver somniferum HOM05D001081 ORTHO05D004708 1.3e-23 112.8 85 64.7
AUR62019407 Chenopodium quinoa HOM05D001081 ORTHO05D004708 2.9e-23 111.7 81 64.2
vmacro06386 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 2.9e-23 111.7 70 70.0
vmacro22638 Vaccinium macrocarpon HOM05D001081 ORTHO05D004708 2.9e-23 111.7 70 70.0
Gohir.A11G015200 Gossypium hirsutum HOM05D001081 ORTHO05D004708 6.5e-23 110.5 81 60.5
Thecc.03G199500 Theobroma cacao HOM05D001081 ORTHO05D004708 8.4e-23 110.2 86 57.0
Medtr1g008050 Medicago truncatula HOM05D001081 ORTHO05D004708 1.4e-22 109.4 78 60.3
Psat6g034720 Pisum sativum HOM05D001081 ORTHO05D004708 1.4e-22 109.4 75 61.3
COL.COLO4_16768 Corchorus olitorius HOM05D001081 ORTHO05D004708 2.5e-22 108.6 87 56.3
HanXRQChr08g0225341 Helianthus annuus HOM05D001081 ORTHO05D004708 4.2e-22 107.8 79 57.0
Sopen03g022900 Solanum pennellii HOM05D001081 ORTHO05D004708 5.5e-22 107.5 80 62.5
ATR0602G075 Amborella trichopoda HOM05D001081 ORTHO05D004708 7.1e-22 107.1 86 59.3
Lj4g0008522 Lotus japonicus HOM05D001081 ORTHO05D004708 7.1e-22 107.1 74 62.2
HanXRQChr08g0225301 Helianthus annuus HOM05D001081 ORTHO05D004708 9.3e-22 106.7 81 55.6
MBI06_g13415_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D004708 9.3e-22 106.7 83 57.8
Medtr1g007950 Medicago truncatula HOM05D001081 ORTHO05D004708 1.2e-21 106.3 78 56.4
Nitab4.5_0000548g0110 Nicotiana tabacum HOM05D001081 ORTHO05D004708 1.6e-21 105.9 81 61.7
Sabra15G0067900 Salix brachista HOM05D001081 ORTHO05D004708 7.9e-21 103.6 130 43.1
Aqoxy3G00072 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 1.0e-20 103.2 85 54.1
GSVIVG01038555001 Vitis vinifera HOM05D001081 ORTHO05D004708 1.3e-20 102.8 93 55.9
Aqoxy4G01594 Aquilegia oxysepala HOM05D001081 ORTHO05D004708 2.3e-20 102.1 75 61.3
SGA_v2.0_scaffold192G40538 Striga asiatica HOM05D001081 ORTHO05D004708 2.3e-20 102.1 73 68.5
TPR.G12082 Trifolium pratense HOM05D001081 ORTHO05D004708 3.0e-20 101.7 78 59.0
Migut.F00209 Erythranthe guttata HOM05D001081 ORTHO05D004708 1.9e-19 99.0 84 56.0
THA.LOC104798901 Tarenaya hassleriana HOM05D001081 ORTHO05D004708 3.3e-19 98.2 68 64.7
Cc02_g01510 Coffea canephora HOM05D001081 ORTHO05D004708 2.8e-18 95.1 94 47.9
Thhalv10003512m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 4.8e-18 94.4 72 61.1
Glyma.17G128700 Glycine max HOM05D001081 ORTHO05D004708 1.1e-17 93.2 63 61.9
Lalb_Chr10g0091361 Lupinus albus HOM05D001081 ORTHO05D004708 1.1e-17 93.2 73 56.2
SalBow4G1120 Salvia bowleyana HOM05D001081 ORTHO05D004708 1.1e-17 93.2 63 66.7
A06p35020 Brassica napus HOM05D001081 ORTHO05D004708 1.8e-17 92.4 77 54.5
BraA06t26425Z Brassica rapa HOM05D001081 ORTHO05D004708 1.8e-17 92.4 77 54.5
CARHR189250 Cardamine hirsuta HOM05D001081 ORTHO05D004708 1.8e-17 92.4 80 55.0
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 1.8e-17 92.4 69 60.9
BcaNung01219 Brassica carinata HOM05D001081 ORTHO05D004708 4.1e-17 91.3 71 60.6
A06p35070 Brassica napus HOM05D001081 ORTHO05D004708 4.1e-17 91.3 71 60.6
C07p43490 Brassica napus HOM05D001081 ORTHO05D004708 4.1e-17 91.3 71 60.6
BolC7t44875H Brassica oleracea HOM05D001081 ORTHO05D004708 4.1e-17 91.3 71 60.6
Carub.0006s2205 Capsella rubella HOM05D001081 ORTHO05D004708 4.1e-17 91.3 67 64.2
AT5G24280 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 5.3e-17 90.9 67 64.2
AL6G35710 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 6.9e-17 90.5 67 62.7
BcaNung01806 Brassica carinata HOM05D001081 ORTHO05D004708 9.0e-17 90.1 77 53.2
C07p43530 Brassica napus HOM05D001081 ORTHO05D004708 1.2e-16 89.7 77 53.2
BolC7t44880H Brassica oleracea HOM05D001081 ORTHO05D004708 1.2e-16 89.7 77 53.2
CARHR189220 Cardamine hirsuta HOM05D001081 ORTHO05D004708 1.5e-16 89.4 67 62.7
Thhalv10003513m.g Eutrema salsugineum HOM05D001081 ORTHO05D004708 1.5e-16 89.4 70 60.0
Eucgr.G00092 Eucalyptus grandis HOM05D001081 ORTHO05D004708 2.0e-16 89.0 74 54.1
Eucgr.G00111 Eucalyptus grandis HOM05D001081 ORTHO05D004708 2.0e-16 89.0 74 54.1
Eucgr.H05016 Eucalyptus grandis HOM05D001081 ORTHO05D004708 2.0e-16 89.0 74 54.1
Aa31LG11G3510 Aethionema arabicum HOM05D001081 ORTHO05D004708 4.5e-16 87.8 71 59.2
Eucgr.G00143 Eucalyptus grandis HOM05D001081 ORTHO05D004708 5.9e-16 87.4 74 52.7
Carub.0006s2203 Capsella rubella HOM05D001081 ORTHO05D004708 7.7e-16 87.0 72 55.6
DCAR_008928 Daucus carota HOM05D001081 ORTHO05D004708 1.0e-15 86.7 69 58.0
Rhsim03G0209100 Rhododendron simsii HOM05D001081 ORTHO05D004708 1.0e-15 86.7 70 61.4
Peaxi162Scf00740g00138 Petunia axillaris HOM05D001081 ORTHO05D004708 1.3e-15 86.3 72 54.2
CSS0032097 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D004708 1.7e-15 85.9 85 51.8
BraA06t26428Z Brassica rapa HOM05D001081 ORTHO05D004708 3.8e-15 84.7 77 55.8
CARHR189240 Cardamine hirsuta HOM05D001081 ORTHO05D004708 5.0e-15 84.3 83 48.2
HanXRQChr08g0225291 Helianthus annuus HOM05D001081 ORTHO05D004708 1.4e-14 82.8 69 52.2
Ca_12793_v3 Cicer arietinum L. HOM05D001081 ORTHO05D004708 5.5e-14 80.9 61 55.7
Sp2g23080 Schrenkiella parvula HOM05D001081 ORTHO05D004708 2.7e-13 78.6 65 58.5
CAN.G481.14 Capsicum annuum HOM05D001081 ORTHO05D004708 1.4e-12 76.3 60 55.0
Oeu041052.4 Olea europaea HOM05D001081 ORTHO05D004708 1.4e-12 76.3 61 59.0
AUR62006087 Chenopodium quinoa HOM05D001081 ORTHO05D004708 1.8e-12 75.9 66 51.5
AagrBONN_evm.TU.Sc2ySwM_228.1615 Anthoceros agrestis HOM05D001081 ORTHO05D004708 5.1e-12 74.3 74 52.7
Lj1C1018T17 Lonicera japonica HOM05D001081 ORTHO05D004708 1.3e-10 69.7 90 47.8
AagrBONN_evm.TU.Sc2ySwM_117.3719 Anthoceros agrestis HOM05D001081 ORTHO05D004708 2.2e-10 68.9 74 50.0
Lj1C1020T7 Lonicera japonica HOM05D001081 ORTHO05D004708 3.7e-10 68.2 119 39.5
Solyc03g083130.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 3.7e-10 68.2 54 55.6
Mapoly0111s0028 Marchantia polymorpha HOM05D001081 ORTHO05D004708 4.8e-10 67.8 66 53.0
Hma1.2p1_0404F.1_g145350 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 1.4e-09 66.2 49 63.3
Nitab4.5_0006933g0030 Nicotiana tabacum HOM05D001081 ORTHO05D004708 1.4e-09 66.2 46 58.7
Hma1.2p1_0404F.1_g145390 Hydrangea macrophylla HOM05D001081 ORTHO05D004708 1.8e-09 65.9 49 63.3
Cpa.g.sc3.89 Carica papaya HOM05D001081 ORTHO05D004708 6.9e-09 63.9 50 54.0
Solyc03g083190.3 Solanum lycopersicum HOM05D001081 ORTHO05D004708 1.2e-08 63.2 48 58.3
SMO213G0001 Selaginella moellendorffii HOM05D001081 ORTHO05D004708 1.5e-08 62.8 64 51.6
EL10Ac9g22095 Beta vulgaris HOM05D001081 ORTHO05D004708 5.9e-08 60.8 61 44.3
Lsat_1_v5_gn_3_127020 Lactuca sativa HOM05D001700 ORTHO05D004708 7.7e-08 60.5 47 55.3
Mapoly0076s0015 Marchantia polymorpha HOM05D001081 ORTHO05D004708 1.3e-07 59.7 68 45.6
AL6G35700 Arabidopsis lyrata HOM05D001081 ORTHO05D004708 5.5e-06 54.3 56 51.8
Cpa.g.sc3.90 Carica papaya HOM05D000004 ORTHO05D000002 5.5e-06 54.3 36 61.1


User provided reference genes

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