Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.5e-115 419.5 209 100.0
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 5.9e-115 417.5 209 99.0
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.8e-114 414.8 207 99.0
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 8.5e-114 413.7 207 98.6
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 8.5e-114 413.7 207 98.6
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 8.5e-114 413.7 207 98.6
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.5e-113 412.1 206 99.0
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 5.5e-113 411.0 207 98.1
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 6.7e-95 350.9 207 82.6
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 1.8e-92 342.8 207 81.2
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 2.4e-92 342.4 207 80.2
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 2.0e-91 339.3 211 78.2
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 5.2e-87 324.7 206 76.7
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 5.2e-87 324.7 207 76.3
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 6.8e-87 324.3 207 76.3
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 2.0e-86 322.8 207 75.4
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 5.7e-86 321.2 207 75.4
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 8.3e-85 317.4 207 74.9
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.2e-83 313.5 207 73.9
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.2e-83 313.5 207 73.9
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 1.2e-83 313.5 207 73.9
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 2.0e-83 312.8 207 72.9
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 1.0e-82 310.5 207 73.4
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 1.0e-82 310.5 206 73.8
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 1.0e-82 310.5 207 73.4
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 1.3e-82 310.1 206 73.8
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 5.0e-82 308.1 206 73.3
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.1e-81 307.0 193 77.7
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 1.9e-81 306.2 207 73.4
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 1.9e-81 306.2 208 71.2
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 2.5e-81 305.8 206 73.8
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 3.3e-81 305.4 207 72.5
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 4.2e-81 305.1 208 71.6
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 5.5e-81 304.7 202 72.3
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 7.2e-81 304.3 202 71.8
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 9.5e-81 303.9 206 72.8
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 9.5e-81 303.9 207 72.9
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 1.6e-80 303.1 207 72.9
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 1.6e-80 303.1 208 71.6
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 6.1e-80 301.2 208 70.7
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 1.0e-79 300.4 211 70.1
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 1.0e-79 300.4 203 73.4
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 1.0e-79 300.4 207 71.5
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 4.0e-79 298.5 208 71.2
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 6.8e-79 297.7 208 70.2
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 8.9e-79 297.4 208 71.2
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 2.0e-78 296.2 203 71.4
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 2.6e-78 295.8 206 70.4
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 3.4e-78 295.4 208 69.2
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 4.4e-78 295.0 208 70.7
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 4.4e-78 295.0 208 68.8
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 1.3e-77 293.5 208 69.2
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 2.2e-77 292.7 208 69.7
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 2.2e-77 292.7 199 72.4
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 3.7e-77 292.0 202 72.3
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 4.9e-77 291.6 213 68.5
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 8.3e-77 290.8 203 71.9
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 1.4e-76 290.0 203 70.4
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 2.4e-76 289.3 224 65.2
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 4.1e-76 288.5 207 70.0
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 5.4e-76 288.1 197 70.6
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 9.2e-76 287.3 207 69.6
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 2.7e-75 285.8 207 67.6
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 4.5e-75 285.0 208 68.8
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 1.7e-74 283.1 207 67.6
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 1.7e-74 283.1 207 66.7
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 1.7e-74 283.1 207 67.1
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 2.3e-74 282.7 207 66.7
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 2.9e-74 282.3 207 70.5
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 3.9e-74 282.0 207 66.7
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 5.0e-74 281.6 207 66.2
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 1.9e-73 279.6 208 68.3
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 2.5e-73 279.3 192 70.8
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 3.3e-73 278.9 207 66.2
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 4.3e-73 278.5 203 67.5
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 5.6e-73 278.1 207 65.7
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 9.5e-73 277.3 206 66.0
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 1.6e-72 276.6 207 64.7
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 2.1e-72 276.2 207 65.7
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 2.1e-72 276.2 208 65.4
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 3.6e-72 275.4 209 66.5
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 4.7e-72 275.0 206 65.5
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 4.7e-72 275.0 207 65.7
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 4.7e-72 275.0 205 66.8
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 1.8e-71 273.1 207 64.3
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 5.2e-71 271.6 207 64.7
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 5.2e-71 271.6 203 66.5
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 1.2e-70 270.4 198 66.7
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 2.0e-70 269.6 200 68.5
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 2.6e-70 269.2 183 71.0
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 5.8e-70 268.1 202 66.3
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 9.8e-70 267.3 202 67.3
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 9.8e-70 267.3 202 67.3
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 9.8e-70 267.3 202 67.3
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 4.6e-67 258.5 192 65.6
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 4.6e-67 258.5 188 68.1
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 1.0e-66 257.3 178 71.3
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 1.0e-66 257.3 188 67.6
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 4.3e-65 251.9 223 59.6
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 1.2e-64 250.4 206 63.6
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 4.7e-64 248.4 199 61.3
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 9.8e-62 240.7 203 57.1
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 1.7e-61 240.0 199 63.3
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.4e-60 236.9 202 60.9
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.2e-59 233.8 184 62.5
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 4.6e-59 231.9 173 64.7
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 5.1e-58 228.4 156 72.4
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 1.4e-55 220.3 187 57.8
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 4.4e-54 215.3 144 72.9
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 2.2e-53 213.0 166 58.4
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 9.5e-49 197.6 207 54.6
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 2.7e-43 179.5 175 50.9
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 8.1e-40 167.9 113 69.0
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 1.1e-36 157.5 130 63.1
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 5.1e-34 148.7 186 39.8
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 2.1e-32 143.3 79 81.0
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 1.4e-28 130.6 167 40.1
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 5.1e-26 122.1 107 50.5
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 4.3e-25 119.0 173 39.9
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 5.8e-22 108.6 63 74.6
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 6.5e-21 105.1 105 51.4
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 1.0e-18 97.8 83 62.7
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 1.6e-16 90.5 187 34.2
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 3.4e-14 82.8 79 53.2
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 1.7e-13 80.5 79 54.4
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 3.8e-13 79.3 71 54.9
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 1.1e-12 77.8 81 53.1
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 4.6e-11 72.4 61 57.4
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 3.3e-09 66.2 153 34.0
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 4.3e-09 65.9 55 58.2
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 1.6e-08 63.9 47 68.1
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 1.6e-08 63.9 50 62.0
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 6.9e-07 58.5 40 67.5


User provided reference genes

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