Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 8.2e-126 453.8 233 100.0
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 8.2e-126 453.8 233 100.0
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 7.7e-124 447.2 233 96.6
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.7e-123 446.0 233 96.1
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.8e-123 444.9 233 96.1
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.1e-122 443.4 233 95.7
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.1e-122 443.4 233 95.7
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 2.3e-120 435.6 233 93.6
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 2.8e-97 359.0 235 80.0
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.2e-95 353.6 234 80.8
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 1.7e-94 349.7 231 81.4
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 4.9e-94 348.2 231 79.2
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 4.9e-94 348.2 229 76.4
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.1e-93 347.1 234 78.2
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 3.2e-93 345.5 211 80.6
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 1.2e-92 343.6 233 75.1
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.0e-92 342.8 233 76.0
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 2.7e-92 342.4 211 81.5
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 1.0e-91 340.5 215 81.4
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.0e-91 340.5 232 78.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 2.3e-91 339.3 233 76.0
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 3.9e-91 338.6 239 74.9
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 3.9e-91 338.6 212 81.1
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 6.6e-91 337.8 213 80.3
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 6.6e-91 337.8 207 81.6
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 1.9e-90 336.3 234 77.8
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 3.3e-90 335.5 218 78.9
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 4.3e-90 335.1 216 78.7
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 4.3e-90 335.1 233 75.5
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 9.5e-90 334.0 208 79.3
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.2e-89 333.6 229 75.1
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 1.2e-89 333.6 213 80.3
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.8e-89 332.4 213 80.3
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 2.8e-89 332.4 238 74.4
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 8.1e-89 330.9 217 77.9
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 1.1e-88 330.5 236 74.6
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.4e-88 330.1 208 81.7
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.8e-88 329.7 233 75.5
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.3e-88 329.3 213 79.3
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 5.2e-88 328.2 238 75.6
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 8.9e-88 327.4 217 77.0
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.2e-87 327.0 236 76.3
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 1.2e-87 327.0 212 78.3
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.0e-87 326.2 211 78.2
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 2.6e-87 325.9 208 77.9
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 5.8e-87 324.7 228 75.9
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 5.8e-87 324.7 228 75.9
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 7.5e-87 324.3 235 76.2
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 9.8e-87 323.9 240 73.8
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 9.8e-87 323.9 216 75.9
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 9.8e-87 323.9 228 75.9
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 1.3e-86 323.6 232 73.7
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 1.7e-86 323.2 228 75.9
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 2.4e-85 319.3 212 78.3
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 2.4e-85 319.3 212 78.3
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 2.4e-85 319.3 232 72.8
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 7.1e-85 317.8 233 70.4
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 1.2e-84 317.0 236 72.9
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.6e-84 316.6 236 74.2
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 2.7e-84 315.8 212 75.9
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 7.8e-84 314.3 207 75.8
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.3e-83 312.8 209 74.6
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.9e-83 312.0 214 73.8
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 5.1e-83 311.6 214 74.8
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 6.6e-83 311.2 235 69.8
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 1.1e-82 310.5 212 75.9
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 1.9e-82 309.7 235 70.6
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 1.9e-82 309.7 251 68.9
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 1.9e-82 309.7 210 73.8
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 4.3e-82 308.5 208 75.0
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 9.5e-82 307.4 209 73.2
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 9.5e-82 307.4 210 73.3
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.6e-81 306.6 217 70.5
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 1.4e-80 303.5 223 72.2
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 1.8e-80 303.1 223 72.2
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 2.3e-80 302.8 227 71.8
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 4.0e-80 302.0 207 73.4
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.2e-79 300.4 229 69.0
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 1.5e-79 300.1 233 64.4
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 2.0e-79 299.7 205 76.6
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.6e-79 297.7 217 70.0
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 7.6e-79 297.7 235 64.3
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 6.4e-78 294.7 226 70.4
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 1.4e-77 293.5 230 69.1
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.4e-77 293.5 225 66.2
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 2.4e-77 292.7 202 72.3
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 7.1e-77 291.2 239 66.9
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 2.7e-76 289.3 215 67.4
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 7.8e-76 287.7 233 70.4
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 3.0e-75 285.8 233 69.5
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 3.9e-75 285.4 198 71.7
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 8.6e-75 284.3 201 70.1
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 8.6e-75 284.3 233 62.7
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 1.9e-74 283.1 233 62.2
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 4.3e-74 282.0 217 67.3
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.2e-73 280.4 211 67.8
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 3.6e-73 278.9 211 68.2
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 6.2e-73 278.1 208 69.2
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 8.1e-73 277.7 232 62.9
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.4e-72 276.9 208 68.8
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 5.2e-72 275.0 214 65.4
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 6.9e-72 274.6 202 69.3
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 4.4e-71 271.9 238 62.2
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 4.4e-71 271.9 238 62.2
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 4.4e-71 271.9 208 68.3
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 5.8e-71 271.6 211 67.3
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 5.8e-71 271.6 211 67.3
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 5.8e-71 271.6 211 67.3
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 7.6e-71 271.2 218 63.3
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 2.2e-70 269.6 211 66.8
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 2.2e-70 269.6 234 62.4
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 3.8e-70 268.9 238 61.8
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 8.4e-70 267.7 238 60.9
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.1e-69 267.3 238 60.9
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 1.9e-69 266.5 238 60.9
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 2.4e-69 266.2 239 61.1
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 2.4e-69 266.2 211 66.4
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 6.0e-68 261.5 206 64.1
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 7.8e-68 261.2 198 68.2
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 1.7e-67 260.0 213 62.4
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 3.9e-67 258.8 205 63.4
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 5.1e-67 258.5 230 58.7
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 2.0e-63 246.5 213 64.3
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 6.4e-62 241.5 143 81.8
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 8.4e-62 241.1 230 57.4
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 1.9e-61 240.0 234 62.0
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 8.1e-57 224.6 196 64.3
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 8.1e-57 224.6 201 55.7
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.4e-56 223.8 171 69.0
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 4.2e-53 212.2 166 64.5
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.2e-52 210.7 222 54.5
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 2.3e-51 206.5 120 83.3
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 3.5e-44 182.6 121 70.2
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 6.0e-44 181.8 127 73.2
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 6.0e-44 181.8 202 51.0
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 4.3e-42 175.6 104 82.7
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 4.1e-40 169.1 102 80.4
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 4.1e-40 169.1 105 72.4
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 9.4e-21 104.8 115 53.9
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 3.1e-16 89.7 94 55.3
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 7.0e-08 62.0 198 26.3
AagrBONN_evm.TU.Sc2ySwM_117.4181 Anthoceros agrestis HOM05D025074 ORTHO05D006395 5.9e-07 58.9 74 35.1
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 5.9e-07 58.9 74 35.1
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.9e-06 56.6 144 27.8


User provided reference genes

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