Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.5e-59 232.6 115 100.0
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 5.6e-59 230.7 115 99.1
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 1.8e-57 225.7 117 97.4
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.8e-57 225.7 117 97.4
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 5.2e-57 224.2 117 96.6
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 6.0e-53 210.7 115 92.2
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 1.7e-47 192.6 102 97.1
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.4e-47 190.7 104 95.2
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 7.1e-46 187.2 104 93.3
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 1.4e-22 109.8 115 60.9
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 2.5e-19 99.0 115 50.4
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 4.3e-19 98.2 113 49.6
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 2.8e-18 95.5 128 43.0
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 3.7e-18 95.1 118 48.3
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 4.8e-18 94.7 113 46.9
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 1.1e-17 93.6 109 48.6
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 2.4e-17 92.4 103 49.5
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 6.9e-17 90.9 119 47.1
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 9.0e-17 90.5 113 44.2
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 9.0e-17 90.5 116 50.0
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 1.3e-15 86.7 112 46.4
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 1.7e-15 86.3 171 37.4
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 8.5e-15 84.0 127 42.5
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 1.9e-14 82.8 116 44.8
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 2.5e-14 82.4 106 47.2
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.2e-14 82.0 108 43.5
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.2e-14 82.0 98 49.0
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 3.2e-14 82.0 108 43.5
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.2e-14 82.0 108 43.5
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 3.2e-14 82.0 98 49.0
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 3.2e-14 82.0 121 44.6
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 3.2e-14 82.0 98 48.0
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 3.2e-14 82.0 70 54.3
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 3.2e-14 82.0 74 54.1
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.2e-14 81.6 98 49.0
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 4.2e-14 81.6 110 48.2
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 9.4e-14 80.5 98 51.0
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 1.2e-13 80.1 77 49.4
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 1.2e-13 80.1 82 48.8
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 1.6e-13 79.7 100 49.0
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.6e-13 79.7 107 43.9
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.6e-13 79.7 97 50.5
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 2.1e-13 79.3 126 38.1
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 2.7e-13 79.0 74 52.7
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 3.6e-13 78.6 74 55.4
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 4.6e-13 78.2 88 53.4
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 4.6e-13 78.2 77 48.1
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 6.1e-13 77.8 129 43.4
TPR.G37843 Trifolium pratense HOM05D005304 ORTHO05D004438 6.1e-13 77.8 81 50.6
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 1.0e-12 77.0 69 50.7
Glyma.10G199500 Glycine max HOM05D005304 ORTHO05D004438 1.0e-12 77.0 70 60.0
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 1.0e-12 77.0 110 40.9
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.4e-12 76.6 117 42.7
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.4e-12 76.6 89 47.2
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 1.8e-12 76.3 75 54.7
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 1.8e-12 76.3 99 44.4
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 3.9e-12 75.1 124 40.3
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 3.9e-12 75.1 124 41.1
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 5.1e-12 74.7 69 50.7
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 5.1e-12 74.7 99 39.4
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 6.7e-12 74.3 80 47.5
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 6.7e-12 74.3 115 41.7
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 6.7e-12 74.3 70 54.3
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.1e-11 73.6 92 43.5
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 1.1e-11 73.6 107 43.0
CsaV3_5G035790 Cucumis sativus L. HOM05D005304 ORTHO05D004438 2.0e-11 72.8 116 39.7
SHI54636 Sapria himalayana HOM05D005304 ORTHO05D004438 2.0e-11 72.8 94 46.8
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.5e-11 72.4 85 48.2
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 3.3e-11 72.0 82 50.0
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 3.3e-11 72.0 94 42.6
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 3.3e-11 72.0 94 42.6
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 3.3e-11 72.0 92 46.7
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 7.4e-11 70.9 104 41.3
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 2.2e-10 69.3 89 47.2
Lalb_Chr03g0036331 Lupinus albus HOM05D005304 ORTHO05D004438 2.8e-10 68.9 119 46.2
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 2.8e-10 68.9 101 45.5
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 3.7e-10 68.6 103 45.6
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 4.8e-10 68.2 70 50.0
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 6.3e-10 67.8 100 44.0
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 8.2e-10 67.4 88 42.0
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 1.1e-09 67.0 90 44.4
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 1.4e-09 66.6 82 47.6
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 1.8e-09 66.2 94 44.7
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.8e-09 66.2 117 42.7
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.4e-09 65.9 106 44.3
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 3.1e-09 65.5 60 60.0
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 3.1e-09 65.5 104 40.4
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 4.1e-09 65.1 77 49.4
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 4.1e-09 65.1 102 42.2
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 6.9e-09 64.3 67 50.7
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 6.9e-09 64.3 77 45.5
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.9e-09 64.3 59 52.5
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.9e-09 64.3 59 52.5
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 6.9e-09 64.3 59 52.5
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 9.1e-09 63.9 99 36.4
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.1e-09 63.9 59 54.2
Gohir.A07G105600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.2e-08 63.5 57 54.4
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.2e-08 63.5 104 44.2
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 1.5e-08 63.2 63 52.4
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.5e-08 63.2 73 47.9
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 2.0e-08 62.8 84 40.5
Eucgr.J01032 Eucalyptus grandis HOM05D005304 ORTHO05D004438 2.6e-08 62.4 60 60.0
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 2.6e-08 62.4 117 36.8
PGR142G4012 Punica granatum HOM05D005304 ORTHO05D016259 3.4e-08 62.0 82 42.7
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 3.4e-08 62.0 63 42.9
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 3.4e-08 62.0 63 42.9
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 3.4e-08 62.0 110 35.5
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 4.5e-08 61.6 58 53.4
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 1.0e-07 60.5 74 44.6
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 1.3e-07 60.1 102 33.3
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.7e-07 59.7 85 40.0
Lalb_Chr19g0129331 Lupinus albus HOM05D005304 ORTHO05D004438 1.7e-07 59.7 63 54.0
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 1.7e-07 59.7 58 50.0
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 2.2e-07 59.3 55 50.9
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 2.9e-07 58.9 99 38.4
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 3.8e-07 58.5 74 48.6
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 5.0e-07 58.2 89 40.4
Gorai.001G117700 Gossypium raimondii HOM05D005304 ORTHO05D004438 5.0e-07 58.2 59 50.8
Manes.04G012000 Manihot esculenta HOM05D005304 ORTHO05D004438 5.0e-07 58.2 63 50.8
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.1e-06 57.0 87 39.1
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 1.1e-06 57.0 100 38.0
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.9e-06 56.2 90 41.1
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 2.5e-06 55.8 77 40.3
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.2e-06 55.5 86 43.0
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 3.2e-06 55.5 100 37.0
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 3.2e-06 55.5 77 40.3
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 7.2e-06 54.3 89 38.2
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 7.2e-06 54.3 100 40.0
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 7.2e-06 54.3 82 41.5
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 7.2e-06 54.3 100 37.0
Sopen11g003730 Solanum pennellii HOM05D021137 ORTHO05D004438 9.4e-06 53.9 77 39.0


User provided reference genes

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