Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 0.0e+00 1434.1 721 100.0
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 0.0e+00 1408.7 721 97.8
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 0.0e+00 1356.3 721 95.1
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 0.0e+00 1263.4 722 88.1
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 1.7e-307 1058.9 721 73.9
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 1.1e-264 916.8 723 63.9
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.3e-251 872.5 723 62.2
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 5.1e-251 871.3 723 62.2
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 4.3e-250 868.2 722 62.6
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 2.8e-249 865.5 725 60.4
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 3.9e-243 845.1 706 61.2
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 2.0e-242 842.8 724 60.6
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 3.3e-242 842.0 731 59.8
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 4.3e-242 841.6 725 59.9
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 5.3e-240 834.7 722 58.9
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 4.5e-239 831.6 723 60.2
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 1.0e-230 803.9 724 59.1
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 1.1e-226 790.4 719 57.9
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 3.3e-226 788.9 724 56.6
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 2.2e-225 786.2 719 58.0
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 3.1e-224 782.3 730 55.5
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 4.1e-224 781.9 780 55.0
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 3.8e-222 775.4 727 55.3
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 1.9e-221 773.1 723 56.3
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 4.7e-220 768.5 727 56.0
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 1.4e-219 766.9 724 54.8
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 2.3e-219 766.1 724 55.0
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 2.3e-219 766.1 725 55.2
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 2.3e-219 766.1 716 54.9
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 8.3e-217 757.7 732 53.7
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 1.6e-215 753.4 724 54.4
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 1.6e-215 753.4 722 54.4
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 1.3e-214 750.4 724 53.2
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 1.3e-214 750.4 725 53.7
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 3.2e-213 745.7 731 54.6
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 4.0e-211 738.8 731 53.2
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.5e-210 736.9 733 52.8
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 2.2e-209 733.0 725 53.2
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 2.0e-207 726.5 717 53.1
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 2.0e-207 726.5 730 51.9
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 2.7e-207 726.1 690 55.7
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 4.5e-207 725.3 624 60.4
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.3e-206 723.8 724 54.4
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 1.7e-206 723.4 720 54.6
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 8.6e-206 721.1 733 51.6
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 8.6e-206 721.1 715 54.3
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 1.1e-205 720.7 724 52.2
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 2.5e-205 719.5 722 53.5
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 2.5e-205 719.5 722 54.6
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 7.3e-205 718.0 727 52.3
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 1.2e-204 717.2 728 51.6
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 6.1e-204 714.9 720 54.6
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 1.2e-202 710.7 721 51.3
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 2.6e-202 709.5 724 51.7
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 3.7e-201 705.7 604 62.1
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 4.9e-201 705.3 728 51.1
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 6.4e-201 704.9 719 52.6
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 3.5e-199 699.1 724 50.8
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 5.0e-198 695.3 684 53.9
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 6.6e-198 694.9 733 50.5
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 1.6e-196 690.3 722 50.1
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 2.8e-196 689.5 725 50.1
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 5.0e-190 668.7 709 50.8
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 8.6e-190 667.9 727 49.5
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 8.1e-188 661.4 726 51.0
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 1.1e-187 661.0 716 50.3
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.8e-187 660.2 762 49.2
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 6.8e-187 658.3 707 49.4
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 2.1e-183 646.7 532 60.3
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 7.8e-183 644.8 533 60.2
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 6.6e-182 641.7 727 48.3
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 2.5e-181 639.8 704 49.0
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 4.3e-181 639.0 722 49.2
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 3.3e-173 612.8 724 45.7
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 1.1e-171 607.8 419 73.0
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 1.8e-171 607.1 554 59.4
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 2.6e-170 603.2 482 62.4
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 1.9e-168 597.0 622 51.9
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 1.5e-165 587.4 538 54.3
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 2.5e-165 586.6 458 63.1
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 1.1e-160 571.2 450 62.7
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 2.0e-154 550.4 625 49.3
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 8.4e-145 518.5 451 60.1
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 1.0e-142 511.5 644 46.9
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 2.6e-138 496.9 494 53.8
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 1.2e-135 488.0 635 45.0
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.0e-134 485.0 451 58.3
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 1.3e-134 484.6 572 46.0
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 2.6e-125 453.8 511 50.7
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 7.4e-125 452.2 552 46.6
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 1.1e-120 438.3 568 43.0
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 1.4e-107 394.8 510 42.2
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 1.6e-103 381.3 691 35.7
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 1.7e-100 371.3 395 50.9
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 4.2e-96 356.7 853 32.0
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 5.2e-94 349.7 207 81.2
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 4.1e-91 340.1 798 31.0
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 4.5e-90 336.7 239 67.8
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 2.3e-89 334.3 717 32.9
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 2.9e-89 334.0 717 32.9
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 3.6e-87 327.0 605 35.2
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 6.8e-86 322.8 722 32.8
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 8.6e-81 305.8 842 29.0
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 3.6e-71 273.9 189 69.8
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.1e-70 272.3 397 40.8
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 1.9e-51 208.4 219 54.8
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 3.0e-49 201.1 334 38.0
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.6e-42 178.7 160 51.2
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 6.0e-42 176.8 109 76.1
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.1e-38 166.0 149 57.0
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 9.9e-37 159.5 146 52.1
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 2.1e-34 151.8 154 52.6
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 1.1e-32 146.0 132 56.8
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 4.3e-32 144.1 211 40.3
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 2.8e-31 141.4 89 70.8
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 5.3e-30 137.1 325 31.4
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 6.9e-30 136.7 204 42.6
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 8.4e-28 129.8 275 31.3
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 3.9e-25 120.9 205 41.5
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 2.8e-15 88.2 59 64.4
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 5.3e-14 84.0 83 53.0
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 2.9e-12 78.2 43 74.4
Rhsim12G0031700 Rhododendron simsii HOM05D000017 ORTHO05D000013 7.9e-10 70.1 69 58.0
Sopen05g017900 Solanum pennellii HOM05D028470 ORTHO05D037706 3.7e-07 61.2 87 39.1
Solyc05g150129.1 Solanum lycopersicum HOM05D006558 ORTHO05D008424 2.4e-06 58.5 62 46.8


User provided reference genes

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