Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G2076 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.0e-131 471.5 243 100.0
FAN01G0312 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.2e-124 449.9 247 96.4
FAN10G2396 Fragaria x ananassa HOM05D004925 ORTHO05D005643 4.9e-113 411.4 247 90.7
FAN03G1097 Fragaria x ananassa HOM05D004925 ORTHO05D005643 3.2e-112 408.7 243 89.7
FvH4_7g00160 Fragaria vesca HOM05D004925 ORTHO05D005643 1.7e-110 402.9 255 88.2
FAN06G2494 Fragaria x ananassa HOM05D004925 ORTHO05D005643 1.2e-103 380.2 254 84.3
RcHm_v2.0_Chr1g0313411 Rosa chinensis HOM05D004925 ORTHO05D005643 1.3e-92 343.6 260 76.5
MD07G1002600 Malus domestica HOM05D004925 ORTHO05D005643 1.0e-54 217.6 249 59.0
MD02G1318600 Malus domestica HOM05D004925 ORTHO05D005643 2.0e-50 203.4 251 56.6
Cfa004806 Carpinus fangiana HOM05D004925 ORTHO05D005643 1.8e-46 190.3 251 51.4
CiPaw.13G000800 Carya illinoinensis HOM05D004925 ORTHO05D005643 1.5e-45 187.2 229 52.4
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 1.7e-44 183.7 240 52.1
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 1.7e-44 183.7 240 52.1
Dinv43931 Davidia involucrata HOM05D004925 ORTHO05D005643 6.3e-44 181.8 159 65.4
Dinv43491 Davidia involucrata HOM05D004925 ORTHO05D005643 1.2e-42 177.6 161 64.6
Sed0003173 Sechium edule HOM05D004925 ORTHO05D005643 2.0e-42 176.8 155 60.6
CAN.G261.6 Capsicum annuum HOM05D004925 ORTHO05D005643 4.5e-42 175.6 155 61.3
ClCG10G012660 Citrullus lanatus HOM05D004925 ORTHO05D005643 5.9e-42 175.3 251 49.0
CANSAT11G0505 Cannabis sativa HOM05D004925 ORTHO05D005643 7.7e-42 174.9 186 57.0
Peaxi162Scf00878g00036 Petunia axillaris HOM05D004925 ORTHO05D005643 7.7e-42 174.9 161 60.2
TWI73G1095 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 1.3e-41 174.1 197 55.3
Manes.10G151100 Manihot esculenta HOM05D004925 ORTHO05D005643 5.0e-41 172.2 242 48.3
TWI09G1281 Tripterygium wilfordii HOM05D004925 ORTHO05D005643 5.0e-41 172.2 246 47.2
COL.COLO4_25137 Corchorus olitorius HOM05D004925 ORTHO05D005643 1.1e-40 171.0 231 49.4
Glyma.08G148900 Glycine max HOM05D004925 ORTHO05D005643 1.5e-40 170.6 280 45.4
CsaV3_3G032460 Cucumis sativus L. HOM05D004925 ORTHO05D005643 2.5e-40 169.9 251 48.2
Sopen01g033490 Solanum pennellii HOM05D004925 ORTHO05D005643 2.5e-40 169.9 185 54.6
Solyc01g073920.3 Solanum lycopersicum HOM05D004925 ORTHO05D005643 4.2e-40 169.1 185 54.6
Cpa.g.sc189.17 Carica papaya HOM05D004925 ORTHO05D005643 7.2e-40 168.3 151 65.6
arahy.Tifrunner.gnm1.ann1.WEBP2W Arachis hypogaea HOM05D004925 ORTHO05D005643 9.4e-40 167.9 159 59.1
Gorai.004G035400 Gossypium raimondii HOM05D004925 ORTHO05D005643 3.6e-39 166.0 165 53.9
Nn2g15712 Nelumbo nucifera HOM05D004925 ORTHO05D005643 6.1e-39 165.2 153 58.8
GSVIVG01001367001 Vitis vinifera HOM05D004925 ORTHO05D005643 6.1e-39 165.2 243 46.9
Thecc.01G416300 Theobroma cacao HOM05D004925 ORTHO05D005643 2.3e-38 163.3 184 55.4
Gohir.A08G026720 Gossypium hirsutum HOM05D004925 ORTHO05D005643 6.8e-38 161.8 185 51.4
Duzib114G0283 Durio zibethinus HOM05D004925 ORTHO05D005643 1.2e-37 161.0 184 53.3
Gohir.D08G037401 Gossypium hirsutum HOM05D004925 ORTHO05D005643 2.6e-37 159.8 188 50.0
Sc17g0006850 Simmondsia chinensis HOM05D004925 ORTHO05D005643 7.5e-37 158.3 171 52.6
Rhsim01G0134400 Rhododendron simsii HOM05D004925 ORTHO05D005643 9.7e-37 157.9 248 46.0
QL04p000066 Quercus lobata HOM05D004925 ORTHO05D005643 1.7e-36 157.1 210 51.0
Hma1.2p1_0860F.1_g229570 Hydrangea macrophylla HOM05D004925 ORTHO05D005643 1.1e-35 154.5 253 47.4
SalBow4G3044 Salvia bowleyana HOM05D004925 ORTHO05D005643 1.4e-35 154.1 158 55.1
MSTRG.5000 Avicennia marina HOM05D004925 ORTHO05D005643 1.8e-35 153.7 232 47.4
TAR623G0394 Trochodendron aralioides HOM05D004925 ORTHO05D005643 1.8e-35 153.7 223 47.1
arahy.Tifrunner.gnm1.ann1.BFX48A Arachis hypogaea HOM05D004925 ORTHO05D005643 2.4e-35 153.3 159 55.3
Glyma.15G269200 Glycine max HOM05D004925 ORTHO05D005643 3.1e-35 152.9 307 40.1
AL4G28340 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 5.3e-35 152.1 161 54.7
SalBow4G1354 Salvia bowleyana HOM05D004925 ORTHO05D005643 7.0e-35 151.8 177 52.5
Migut.N01664 Erythranthe guttata HOM05D004925 ORTHO05D005643 9.1e-35 151.4 245 45.7
MELO3C030929.2 Cucumis melo HOM05D004925 ORTHO05D005643 1.2e-34 151.0 304 40.5
Phvul.005G039900 Phaseolus vulgaris HOM05D004925 ORTHO05D005643 1.2e-34 151.0 291 42.3
Potri.001G229800 Populus trichocarpa HOM05D004925 ORTHO05D005643 1.6e-34 150.6 282 43.3
QL04p003160 Quercus lobata HOM05D004925 ORTHO05D005643 1.6e-34 150.6 258 44.2
Nitab4.5_0000892g0140 Nicotiana tabacum HOM05D004925 ORTHO05D005643 2.0e-34 150.2 193 47.7
Prupe.2G004100 Prunus persica HOM05D004925 ORTHO05D005643 4.5e-34 149.1 245 49.0
SGA_v2.0_scaffold95G28775 Striga asiatica HOM05D004925 ORTHO05D005643 7.7e-34 148.3 252 46.4
Medtr2g060910 Medicago truncatula HOM05D004925 ORTHO05D005643 2.2e-33 146.7 163 54.0
Lalb_Chr03g0033881 Lupinus albus HOM05D004925 ORTHO05D005643 3.8e-33 146.0 152 52.6
Oeu053533.1 Olea europaea HOM05D004925 ORTHO05D005643 6.5e-33 145.2 304 39.5
Atru.chr11.2695 Acer truncatum HOM05D004925 ORTHO05D005643 8.5e-33 144.8 258 42.6
AT2G32840 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 1.5e-32 144.1 161 54.0
Carub.0004s1427 Capsella rubella HOM05D004925 ORTHO05D005643 2.5e-32 143.3 266 42.1
Cc02_g27070 Coffea canephora HOM05D004925 ORTHO05D005643 4.2e-32 142.5 263 43.3
CARHR126790 Cardamine hirsuta HOM05D004925 ORTHO05D005643 9.4e-32 141.4 178 49.4
Thhalv10016920m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 2.7e-31 139.8 261 42.5
Actinidia15855 Actinidia chinensis HOM05D004925 ORTHO05D005643 6.1e-31 138.7 177 49.7
THA.LOC104801020 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.0e-30 137.9 241 45.2
Eucgr.G03409 Eucalyptus grandis HOM05D004925 ORTHO05D005643 2.3e-30 136.7 198 47.0
Lj3g0011601 Lotus japonicus HOM05D004925 ORTHO05D005643 2.3e-30 136.7 221 45.2
TAR369G0809 Trochodendron aralioides HOM05D004925 ORTHO05D005643 2.3e-30 136.7 229 43.7
TPR.G11699 Trifolium pratense HOM05D004925 ORTHO05D005643 3.0e-30 136.3 140 57.1
ECA248G0029 Erigeron canadensis HOM05D004925 ORTHO05D005643 4.0e-30 136.0 205 44.9
Aqoxy1G00133 Aquilegia oxysepala HOM05D004925 ORTHO05D005643 1.2e-29 134.4 168 48.2
A10p03360 Brassica napus HOM05D004925 ORTHO05D005643 1.5e-29 134.0 159 50.9
Hund25510 Selenicereus undatus HOM05D004925 ORTHO05D005643 2.6e-29 133.3 270 41.9
Lsat_1_v5_gn_1_110881 Lactuca sativa HOM05D004925 ORTHO05D005643 3.4e-29 132.9 149 51.0
PSO384G4128 Papaver somniferum HOM05D004925 ORTHO05D005643 4.4e-29 132.5 192 45.8
BraA10t42612Z Brassica rapa HOM05D004925 ORTHO05D005643 9.8e-29 131.3 149 53.0
Sp4g15220 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.3e-28 131.0 266 41.4
Oeu024926.1 Olea europaea HOM05D004925 ORTHO05D005643 1.7e-28 130.6 246 36.2
BcaB01g00977 Brassica carinata HOM05D004925 ORTHO05D005643 3.7e-28 129.4 272 40.1
Thhalv10009447m.g Eutrema salsugineum HOM05D004925 ORTHO05D005643 4.8e-28 129.0 151 53.0
MBI19_g23208_MAGBIO Magnolia biondii HOM05D004925 ORTHO05D005643 4.8e-28 129.0 206 44.2
BcaB02g10501 Brassica carinata HOM05D004925 ORTHO05D005643 6.3e-28 128.6 267 41.6
Ca_02951_v3 Cicer arietinum L. HOM05D004925 ORTHO05D005643 6.3e-28 128.6 289 39.1
Medtr4g125960 Medicago truncatula HOM05D004925 ORTHO05D005643 6.3e-28 128.6 179 47.5
HanXRQChr11g0341641 Helianthus annuus HOM05D004925 ORTHO05D005643 1.1e-27 127.9 175 45.7
Sp1g03770 Schrenkiella parvula HOM05D004925 ORTHO05D005643 1.4e-27 127.5 183 47.5
C05p03080 Brassica napus HOM05D004925 ORTHO05D005643 1.8e-27 127.1 154 50.0
Lalb_Chr25g0283541 Lupinus albus HOM05D004925 ORTHO05D005643 3.1e-27 126.3 238 39.9
A05p12810 Brassica napus HOM05D004925 ORTHO05D005643 1.2e-26 124.4 256 42.6
BolC5t29090H Brassica oleracea HOM05D004925 ORTHO05D005643 1.2e-26 124.4 144 52.1
HanXRQChr01g0018661 Helianthus annuus HOM05D004925 ORTHO05D005643 1.2e-26 124.4 187 46.0
vmacro12585 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.6e-26 124.0 311 36.7
PGR119G0958 Punica granatum HOM05D004925 ORTHO05D005643 2.7e-26 123.2 245 38.8
HanXRQChr11g0341871 Helianthus annuus HOM05D004925 ORTHO05D005643 4.5e-26 122.5 144 48.6
C04p16720 Brassica napus HOM05D004925 ORTHO05D005643 7.7e-26 121.7 260 41.2
Aa31LG5G4490 Aethionema arabicum HOM05D004925 ORTHO05D005643 1.0e-25 121.3 229 43.7
Ciclev10032226m.g Citrus clementina HOM05D004925 ORTHO05D005643 1.3e-25 120.9 279 36.6
Sed0010000 Sechium edule HOM05D004925 ORTHO05D005643 2.9e-25 119.8 248 40.3
Actinidia21578 Actinidia chinensis HOM05D004925 ORTHO05D005643 1.1e-24 117.9 224 42.4
THA.LOC104816029 Tarenaya hassleriana HOM05D004925 ORTHO05D005643 1.9e-24 117.1 179 44.7
CDE04G0753 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 4.2e-24 115.9 267 39.0
BraA05t20219Z Brassica rapa HOM05D004925 ORTHO05D005643 5.5e-24 115.5 273 39.9
BolC4t23220H Brassica oleracea HOM05D004925 ORTHO05D005643 7.2e-24 115.2 249 42.2
CARHR004330 Cardamine hirsuta HOM05D004925 ORTHO05D005643 1.2e-23 114.4 141 49.6
HanXRQChr11g0341651 Helianthus annuus HOM05D004925 ORTHO05D005643 1.2e-23 114.4 219 40.6
PSO339G6120 Papaver somniferum HOM05D004925 ORTHO05D005643 8.0e-23 111.7 193 43.0
unitig_22.g5889 Utricularia gibba HOM05D004925 ORTHO05D005643 1.4e-22 110.9 236 38.6
AUR62015612 Chenopodium quinoa HOM05D004925 ORTHO05D005643 8.9e-22 108.2 182 43.4
vmacro21158 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 4.9e-20 102.4 316 33.9
EL10Ac8g20283 Beta vulgaris HOM05D004925 ORTHO05D005643 2.0e-18 97.1 179 41.9
Sabra16G0137200 Salix brachista HOM05D004925 ORTHO05D005643 4.5e-18 95.9 99 57.6
SEGI_38326 Sequoiadendron giganteum HOM05D004925 ORTHO05D005643 1.0e-17 94.7 198 37.9
AT1G04930 Arabidopsis thaliana HOM05D004925 ORTHO05D005643 8.6e-17 91.7 229 34.5
CDE06G1226 Ceratophyllum demersum HOM05D004925 ORTHO05D005643 1.1e-16 91.3 155 41.3
SGA_v2.0_scaffold4G02236 Striga asiatica HOM05D001227 ORTHO05D001082 3.3e-16 89.7 278 34.2
Zm00001eb399260 Zea mays HOM05D004925 ORTHO05D005643 5.6e-16 89.0 230 36.5
Nitab4.5_0005278g0010 Nicotiana tabacum HOM05D004925 ORTHO05D005643 9.5e-16 88.2 109 47.7
ATR0598G164 Amborella trichopoda HOM05D004925 ORTHO05D005643 2.1e-15 87.0 232 37.5
vmacro21156 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 6.1e-15 85.5 276 31.2
Aa31LG1G19930 Aethionema arabicum HOM05D004925 ORTHO05D005643 3.1e-14 83.2 215 37.7
A09p67630 Brassica napus HOM05D004925 ORTHO05D005643 1.2e-13 81.3 109 48.6
CSS0038538 Camellia sinensis var. sinensis HOM05D004925 ORTHO05D005643 1.7e-12 77.4 79 54.4
Haze_10406 Corylus avellana HOM05D004925 ORTHO05D005643 1.7e-12 77.4 65 63.1
AL1G14650 Arabidopsis lyrata HOM05D004925 ORTHO05D005643 1.1e-11 74.7 225 32.9
Lj7A564G31 Lonicera japonica HOM05D004925 ORTHO05D005643 1.1e-11 74.7 56 64.3
BcaB03g16450 Brassica carinata HOM05D000563 ORTHO05D005643 9.2e-11 71.6 91 49.5
HanXRQChr11g0341671 Helianthus annuus HOM05D004925 ORTHO05D005643 6.0e-10 68.9 218 33.5
BcaB03g16451 Brassica carinata HOM05D004925 ORTHO05D005643 1.0e-09 68.2 88 50.0
Oeu013586.1 Olea europaea HOM05D004925 ORTHO05D005643 1.0e-09 68.2 86 48.8
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 1.7e-09 67.4 321 26.8
Mapoly0040s0118 Marchantia polymorpha HOM05D004925 ORTHO05D005643 2.3e-09 67.0 236 30.5
BraA09t42096Z Brassica rapa HOM05D000053 ORTHO05D000035 8.6e-09 65.1 88 50.0
Rhsim06G0015600 Rhododendron simsii HOM05D004925 ORTHO05D005643 8.6e-09 65.1 246 30.1
HPP92_020314 Vanilla planifolia HOM05D004925 ORTHO05D005643 1.5e-08 64.3 228 33.8
BcaB03g16455 Brassica carinata HOM05D004489 ORTHO05D005643 9.5e-08 61.6 86 47.7
Pp3c22_21740 Physcomitrium patens HOM05D004925 ORTHO05D005643 2.8e-07 60.1 271 27.7
PGSC0003DMG400006329 Solanum tuberosum HOM05D004925 ORTHO05D005643 4.0e-06 56.2 222 29.7
Os03g0234600 Oryza sativa ssp. japonica HOM05D004925 ORTHO05D005643 6.8e-06 55.5 173 32.4


User provided reference genes

Program Settings